RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 C5orf56Q8N8D9 126 aa3.59□□□□□ -1.84
USP54-216ENST00000498143 IGKV2D-24A0A075B6R9 120 aa3.58□□□□□ -1.84
USP54-216ENST00000498143 PRR3P79522 188 aaKnown RBP3.58□□□□□ -1.84
USP54-216ENST00000498143 LYPD5Q6UWN5 251 aa3.58□□□□□ -1.84
USP54-216ENST00000498143 A0A0J9YX75 114 aa3.58□□□□□ -1.84
USP54-216ENST00000498143 TRBV6-5A0A0K0K1A5 114 aa3.58□□□□□ -1.84
USP54-216ENST00000498143 H3BPC8 53 aa3.58□□□□□ -1.84
USP54-216ENST00000498143 CRIP1P50238 77 aa3.58□□□□□ -1.84
USP54-216ENST00000498143 CHCHD10Q8WYQ3 142 aaPredicted RBP3.58□□□□□ -1.84
USP54-216ENST00000498143 RPL37AP8A6NKH3 93 aa3.58□□□□□ -1.84
USP54-216ENST00000498143 IBA57-AS1B1ANH7 110 aa3.58□□□□□ -1.84
USP54-216ENST00000498143 KRTAP27-1Q3LI81 207 aa3.58□□□□□ -1.84
USP54-216ENST00000498143 CR1P17927 2039 aa3.58□□□□□ -1.84
USP54-216ENST00000498143 H0Y9P7 68 aa3.58□□□□□ -1.84
USP54-216ENST00000498143 C17orf58Q2M2W7 97 aa3.58□□□□□ -1.84
USP54-216ENST00000498143 IGKV1D-37A0A075B6S9 117 aa3.57□□□□□ -1.84
USP54-216ENST00000498143 MIR22HGQ0VDD5 57 aa3.57□□□□□ -1.84
USP54-216ENST00000498143 LINC01600Q96MT4 127 aa3.57□□□□□ -1.84
USP54-216ENST00000498143 COX6B2Q6YFQ2 88 aa3.57□□□□□ -1.84
USP54-216ENST00000498143 Q6ZRP5 223 aa3.57□□□□□ -1.84
USP54-216ENST00000498143 MIR7-3HGQ8N6C7 128 aa3.57□□□□□ -1.84
USP54-216ENST00000498143 IGKV1-17P01599 117 aa3.57□□□□□ -1.84
USP54-216ENST00000498143 LINC00308Q8TCZ7 52 aa3.57□□□□□ -1.84
USP54-216ENST00000498143 C20orf203Q8NBC4 194 aa3.56□□□□□ -1.84
USP54-216ENST00000498143 RHPN1-AS1Q9BWJ2 59 aa3.56□□□□□ -1.84
USP54-216ENST00000498143 IGLV5-37A0A075B6J1 123 aa3.56□□□□□ -1.84
USP54-216ENST00000498143 SMIM1B2RUZ4 78 aa3.56□□□□□ -1.84
USP54-216ENST00000498143 H3BUA1 57 aa3.56□□□□□ -1.84
USP54-216ENST00000498143 DEFB114Q30KQ6 69 aa3.56□□□□□ -1.84
USP54-216ENST00000498143 IGHV3-16A0A0C4DH30 117 aa3.56□□□□□ -1.84
USP54-216ENST00000498143 UQCR11O14957 56 aa3.56□□□□□ -1.84
USP54-216ENST00000498143 C1orf64Q8NEQ6 169 aa3.56□□□□□ -1.84
USP54-216ENST00000498143 RITA1Q96K30 269 aa3.56□□□□□ -1.84
USP54-216ENST00000498143 A0A096LPF7 62 aa3.56□□□□□ -1.84
USP54-216ENST00000498143 ZNF503-AS2A6NEH8 195 aa3.56□□□□□ -1.84
USP54-216ENST00000498143 PRAC1Q96KF2 57 aa3.56□□□□□ -1.84
USP54-216ENST00000498143 CNFNQ9BYD5 112 aa3.55□□□□□ -1.84
USP54-216ENST00000498143 OCR1Q9BZK8 76 aa3.55□□□□□ -1.84
USP54-216ENST00000498143 IGLV5-39A0A0G2JS06 123 aa3.55□□□□□ -1.84
USP54-216ENST00000498143 GAS8-AS1O95177 125 aa3.55□□□□□ -1.84
USP54-216ENST00000498143 A0A1B0GU69 56 aa3.54□□□□□ -1.84
USP54-216ENST00000498143 I3L2K1 104 aa3.54□□□□□ -1.84
USP54-216ENST00000498143 K7EQD1 137 aa3.54□□□□□ -1.84
USP54-216ENST00000498143 FSTL3O95633 263 aa3.54□□□□□ -1.84
USP54-216ENST00000498143 COX17Q14061 63 aa3.54□□□□□ -1.84
USP54-216ENST00000498143 NTM-AS1Q6ZSK4 140 aa3.54□□□□□ -1.84
USP54-216ENST00000498143 DMAC1Q96GE9 116 aa3.54□□□□□ -1.84
USP54-216ENST00000498143 CHCHD7Q9BUK0 85 aa3.54□□□□□ -1.84
USP54-216ENST00000498143 DNHD1Q96M86 4753 aa3.54□□□□□ -1.84
USP54-216ENST00000498143 IGLV7-46A0A075B6I9 117 aa3.54□□□□□ -1.84
USP54-216ENST00000498143 NDUFA1O15239 70 aa3.54□□□□□ -1.84
USP54-216ENST00000498143 Q8N814 137 aa3.53□□□□□ -1.84
USP54-216ENST00000498143 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.53□□□□□ -1.84
USP54-216ENST00000498143 IGKV2-29A2NJV5 120 aaPredicted RBP3.53□□□□□ -1.84
USP54-216ENST00000498143 LINC01546A6NGU7 62 aa3.53□□□□□ -1.84
USP54-216ENST00000498143 ODF3BA8MYP8 253 aa3.53□□□□□ -1.84
USP54-216ENST00000498143 PRAC2D3DTV9 90 aa3.53□□□□□ -1.84
USP54-216ENST00000498143 E7EUB6 86 aa3.53□□□□□ -1.84
USP54-216ENST00000498143 SLPIP03973 132 aa3.53□□□□□ -1.84
USP54-216ENST00000498143 IGKV4-1P06312 121 aa3.53□□□□□ -1.84
USP54-216ENST00000498143 IGLV11-55A0A075B6I3 123 aa3.53□□□□□ -1.85
USP54-216ENST00000498143 TRGV1A0A0A0MS02 117 aa3.53□□□□□ -1.85
USP54-216ENST00000498143 K7EIM0 57 aa3.53□□□□□ -1.85
USP54-216ENST00000498143 IGLV4-69A0A075B6H9 119 aa3.52□□□□□ -1.85
USP54-216ENST00000498143 IGLV8-61A0A075B6I0 122 aa3.52□□□□□ -1.85
USP54-216ENST00000498143 IGLV4-3A0A075B6K6 122 aa3.52□□□□□ -1.85
USP54-216ENST00000498143 IGHV3-53P01767 116 aa3.52□□□□□ -1.85
USP54-216ENST00000498143 NBPF19A0A087WUL8 3843 aa3.52□□□□□ -1.85
USP54-216ENST00000498143 IGIPA6NJ69 53 aa3.52□□□□□ -1.85
USP54-216ENST00000498143 IGHV3-38A0A0C4DH36 116 aa3.52□□□□□ -1.85
USP54-216ENST00000498143 ADAMTSL4-AS1Q5T5F5 129 aa3.52□□□□□ -1.85
USP54-216ENST00000498143 LCE2CQ5TA81 110 aa3.52□□□□□ -1.85
USP54-216ENST00000498143 CYSTM1Q9H1C7 97 aa3.52□□□□□ -1.85
USP54-216ENST00000498143 Q6ZQT0 140 aa3.51□□□□□ -1.85
USP54-216ENST00000498143 SMCR5Q8TEV8 140 aa3.51□□□□□ -1.85
USP54-216ENST00000498143 DHRS4-AS1Q9P1J3 65 aa3.51□□□□□ -1.85
USP54-216ENST00000498143 SMIM29Q86T20 159 aa3.51□□□□□ -1.85
USP54-216ENST00000498143 CDKN2A-AS1Q9UH64 79 aa3.51□□□□□ -1.85
USP54-216ENST00000498143 APLNQ9ULZ1 77 aa3.51□□□□□ -1.85
USP54-216ENST00000498143 ACYP2P14621 99 aa3.5□□□□□ -1.85
USP54-216ENST00000498143 POLR2KP53803 58 aaKnown RBP3.5□□□□□ -1.85
USP54-216ENST00000498143 SSBP3-AS1Q7Z2R9 100 aa3.5□□□□□ -1.85
USP54-216ENST00000498143 Q9BRP9 147 aa3.5□□□□□ -1.85
USP54-216ENST00000498143 KIF25-AS1Q9Y6Z4 181 aa3.5□□□□□ -1.85
USP54-216ENST00000498143 SMIM11BQ8TCY0 68 aa3.5□□□□□ -1.85
USP54-216ENST00000498143 MYO15AQ9UKN7 3530 aa3.5□□□□□ -1.85
USP54-216ENST00000498143 IGLV7-43P04211 117 aa3.49□□□□□ -1.85
USP54-216ENST00000498143 DNAH14Q0VDD8 3507 aa3.49□□□□□ -1.85
USP54-216ENST00000498143 CTSGP08311 255 aa3.49□□□□□ -1.85
USP54-216ENST00000498143 NOTCH2NLQ7Z3S9 236 aa3.49□□□□□ -1.85
USP54-216ENST00000498143 COX7BP24311 80 aa3.48□□□□□ -1.85
USP54-216ENST00000498143 SPINK13Q1W4C9 94 aa3.48□□□□□ -1.85
USP54-216ENST00000498143 FAM218AQ96MZ4 157 aa3.48□□□□□ -1.85
USP54-216ENST00000498143 IGLV1-50A0A075B6I6 118 aa3.48□□□□□ -1.85
USP54-216ENST00000498143 LINC00315P59091 139 aa3.48□□□□□ -1.85
USP54-216ENST00000498143 WFDC10BQ8IUB3 73 aa3.48□□□□□ -1.85
USP54-216ENST00000498143 C8orf17Q9NRJ1 99 aa3.48□□□□□ -1.85
USP54-216ENST00000498143 RTL8CO15255 209 aa3.47□□□□□ -1.85
USP54-216ENST00000498143 ZANQ9Y493 2812 aa3.47□□□□□ -1.85
USP54-216ENST00000498143 NOP10Q9NPE3 64 aaKnown RBP3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms