RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 CSMD3Q7Z407 3707 aa13.58□□□□□ -0.24
CCDC88B-208ENST00000492980 GHRHP01286 108 aa13.57□□□□□ -0.24
CCDC88B-208ENST00000492980 NUPR2A6NF83 97 aa13.57□□□□□ -0.24
CCDC88B-208ENST00000492980 PSCAO43653 123 aa13.57□□□□□ -0.24
CCDC88B-208ENST00000492980 IGLV1-50A0A075B6I6 118 aa13.55□□□□□ -0.24
CCDC88B-208ENST00000492980 RPL37AP8A6NKH3 93 aa13.55□□□□□ -0.24
CCDC88B-208ENST00000492980 CNBPP62633 177 aaKnown RBP13.55□□□□□ -0.24
CCDC88B-208ENST00000492980 Q6JHZ5 121 aa13.55□□□□□ -0.24
CCDC88B-208ENST00000492980 PRYO14603 147 aa13.54□□□□□ -0.24
CCDC88B-208ENST00000492980 FAM19A5Q7Z5A7 132 aaPredicted RBP13.54□□□□□ -0.24
CCDC88B-208ENST00000492980 PLECQ15149 4684 aaKnown RBP13.53□□□□□ -0.24
CCDC88B-208ENST00000492980 KRTAP4-16G5E9R7 235 aaPredicted RBP13.52□□□□□ -0.24
CCDC88B-208ENST00000492980 DSCR8Q96T75 97 aa13.52□□□□□ -0.24
CCDC88B-208ENST00000492980 DNAH7Q8WXX0 4024 aa13.52□□□□□ -0.24
CCDC88B-208ENST00000492980 SPRR1AP35321 89 aa13.52□□□□□ -0.25
CCDC88B-208ENST00000492980 MRPL55Q7Z7F7 128 aaKnown RBP13.52□□□□□ -0.25
CCDC88B-208ENST00000492980 IGKV3D-7A0A0C4DH55 119 aa13.49□□□□□ -0.25
CCDC88B-208ENST00000492980 B5MCH6 92 aa13.49□□□□□ -0.25
CCDC88B-208ENST00000492980 Q6ZRX8 168 aa13.49□□□□□ -0.25
CCDC88B-208ENST00000492980 A0A096LNI7 61 aa13.49□□□□□ -0.25
CCDC88B-208ENST00000492980 FAM236AA0A1B0GUQ0 79 aa13.49□□□□□ -0.25
CCDC88B-208ENST00000492980 FAM236BA0A1B0GV22 79 aa13.49□□□□□ -0.25
CCDC88B-208ENST00000492980 M0R2N4 97 aa13.49□□□□□ -0.25
CCDC88B-208ENST00000492980 PDE6GP18545 87 aa13.49□□□□□ -0.25
CCDC88B-208ENST00000492980 NBDYA0A0U1RRE5 68 aa13.48□□□□□ -0.25
CCDC88B-208ENST00000492980 TRBV7-4A0A0J9YYF1 115 aa13.48□□□□□ -0.25
CCDC88B-208ENST00000492980 C16orf90A8MZG2 172 aa13.48□□□□□ -0.25
CCDC88B-208ENST00000492980 C14orf177Q52M58 125 aa13.48□□□□□ -0.25
CCDC88B-208ENST00000492980 PRKDCP78527 4128 aaKnown RBP13.47□□□□□ -0.25
CCDC88B-208ENST00000492980 DHRS4-AS1Q9P1J3 65 aa13.46□□□□□ -0.25
CCDC88B-208ENST00000492980 ETDCA0A1B0GVM5 59 aa13.46□□□□□ -0.26
CCDC88B-208ENST00000492980 Q9BRP9 147 aa13.46□□□□□ -0.26
CCDC88B-208ENST00000492980 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.45□□□□□ -0.26
CCDC88B-208ENST00000492980 IGKV2-24A0A0C4DH68 120 aa13.44□□□□□ -0.26
CCDC88B-208ENST00000492980 TENM2Q9NT68 2774 aa13.44□□□□□ -0.26
CCDC88B-208ENST00000492980 UBL5Q9BZL1 73 aa13.43□□□□□ -0.26
CCDC88B-208ENST00000492980 LRCOL1A6NCL2 159 aa13.42□□□□□ -0.26
CCDC88B-208ENST00000492980 Q8N377 158 aa13.42□□□□□ -0.26
CCDC88B-208ENST00000492980 A0A1W2PNN7 141 aa13.41□□□□□ -0.26
CCDC88B-208ENST00000492980 LINC01547P58512 204 aaPredicted RBP13.41□□□□□ -0.26
CCDC88B-208ENST00000492980 ATP5EP2Q5VTU8 51 aa13.41□□□□□ -0.26
CCDC88B-208ENST00000492980 Q6ZRN7 208 aaPredicted RBP13.41□□□□□ -0.26
CCDC88B-208ENST00000492980 DEFB105AQ8NG35 78 aa13.4□□□□□ -0.26
CCDC88B-208ENST00000492980 STARD9Q9P2P6 4700 aa13.4□□□□□ -0.26
CCDC88B-208ENST00000492980 REG3GQ6UW15 175 aa13.4□□□□□ -0.26
CCDC88B-208ENST00000492980 VPS13DQ5THJ4 4388 aa13.39□□□□□ -0.27
CCDC88B-208ENST00000492980 HIST1H4AP62805 103 aaKnown RBP13.39□□□□□ -0.27
CCDC88B-208ENST00000492980 MEGF8Q7Z7M0 2845 aa13.36□□□□□ -0.27
CCDC88B-208ENST00000492980 A0A087WVE0 104 aa13.36□□□□□ -0.27
CCDC88B-208ENST00000492980 CCDC179H3BU77 68 aa13.36□□□□□ -0.27
CCDC88B-208ENST00000492980 C9orf163Q8N9P6 203 aa13.36□□□□□ -0.27
CCDC88B-208ENST00000492980 Q6ZVQ6 151 aa13.35□□□□□ -0.27
CCDC88B-208ENST00000492980 ST20-AS1Q8NBB2 130 aa13.35□□□□□ -0.27
CCDC88B-208ENST00000492980 ERC2-IT1O76042 136 aa13.34□□□□□ -0.27
CCDC88B-208ENST00000492980 CHTF8P0CG12 524 aa13.34□□□□□ -0.27
CCDC88B-208ENST00000492980 DNHD1Q96M86 4753 aa13.34□□□□□ -0.27
CCDC88B-208ENST00000492980 IGLV5-48A0A075B6I7 105 aa13.34□□□□□ -0.27
CCDC88B-208ENST00000492980 UBE2BP63146 152 aa13.33□□□□□ -0.28
CCDC88B-208ENST00000492980 C3orf22Q8N5N4 141 aa13.31□□□□□ -0.28
CCDC88B-208ENST00000492980 PKIGQ9Y2B9 76 aa13.29□□□□□ -0.28
CCDC88B-208ENST00000492980 FAM19A1Q7Z5A9 133 aa13.28□□□□□ -0.28
CCDC88B-208ENST00000492980 ATOX1O00244 68 aa13.27□□□□□ -0.28
CCDC88B-208ENST00000492980 TNP2Q05952 138 aa13.27□□□□□ -0.28
CCDC88B-208ENST00000492980 PHF5AQ7RTV0 110 aaKnown RBP13.27□□□□□ -0.28
CCDC88B-208ENST00000492980 HAMPP81172 84 aa13.27□□□□□ -0.29
CCDC88B-208ENST00000492980 PRLHP81277 87 aa13.25□□□□□ -0.29
CCDC88B-208ENST00000492980 KRTAP11-1Q8IUC1 163 aa13.25□□□□□ -0.29
CCDC88B-208ENST00000492980 CXCL6P80162 114 aa13.23□□□□□ -0.29
CCDC88B-208ENST00000492980 LINC00474Q9P2X8 69 aa13.22□□□□□ -0.29
CCDC88B-208ENST00000492980 PANO1I0J062 215 aa13.22□□□□□ -0.29
CCDC88B-208ENST00000492980 A0A087WTM6 91 aa13.21□□□□□ -0.3
CCDC88B-208ENST00000492980 Q6ZR54 194 aa13.21□□□□□ -0.3
CCDC88B-208ENST00000492980 SMIM29Q86T20 159 aa13.2□□□□□ -0.3
CCDC88B-208ENST00000492980 C1orf137Q5JT78 98 aa13.19□□□□□ -0.3
CCDC88B-208ENST00000492980 A0A1W2PNM2 257 aa13.18□□□□□ -0.3
CCDC88B-208ENST00000492980 HIGD2AQ9BW72 106 aa13.18□□□□□ -0.3
CCDC88B-208ENST00000492980 C3orf84H3BNL1 204 aa13.17□□□□□ -0.3
CCDC88B-208ENST00000492980 UQCRQO14949 82 aa13.17□□□□□ -0.3
CCDC88B-208ENST00000492980 COX7CP15954 63 aa13.17□□□□□ -0.3
CCDC88B-208ENST00000492980 SCXQ7RTU7 201 aa13.16□□□□□ -0.3
CCDC88B-208ENST00000492980 H0Y9J4 135 aa13.15□□□□□ -0.3
CCDC88B-208ENST00000492980 FUSP35637 526 aaKnown RBP eCLIP13.15□□□□□ -0.3
CCDC88B-208ENST00000492980 SPACA4Q8TDM5 124 aa13.15□□□□□ -0.3
CCDC88B-208ENST00000492980 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.14□□□□□ -0.31
CCDC88B-208ENST00000492980 A0A1B0GW54 56 aa13.13□□□□□ -0.31
CCDC88B-208ENST00000492980 EPM2AB3EWF7 344 aa13.13□□□□□ -0.31
CCDC88B-208ENST00000492980 NREPQ16612 68 aa13.13□□□□□ -0.31
CCDC88B-208ENST00000492980 Q8NBF4 154 aa13.13□□□□□ -0.31
CCDC88B-208ENST00000492980 DNAH2Q9P225 4427 aa13.13□□□□□ -0.31
CCDC88B-208ENST00000492980 KMT2AQ03164 3969 aa13.12□□□□□ -0.31
CCDC88B-208ENST00000492980 SERP2Q8N6R1 65 aa13.12□□□□□ -0.31
CCDC88B-208ENST00000492980 DPH3Q96FX2 82 aa13.11□□□□□ -0.31
CCDC88B-208ENST00000492980 F8WEM9 126 aa13.1□□□□□ -0.31
CCDC88B-208ENST00000492980 LINC00476Q8WZB0 136 aa13.1□□□□□ -0.31
CCDC88B-208ENST00000492980 C9orf153Q5TBE3 101 aa13.1□□□□□ -0.31
CCDC88B-208ENST00000492980 SPRR4Q96PI1 79 aa13.1□□□□□ -0.31
CCDC88B-208ENST00000492980 DNAH17Q9UFH2 4485 aa13.09□□□□□ -0.31
CCDC88B-208ENST00000492980 RTL8CO15255 209 aa13.09□□□□□ -0.31
CCDC88B-208ENST00000492980 HECTD4Q9Y4D8 3996 aa13.08□□□□□ -0.32
CCDC88B-208ENST00000492980 UBE2AP49459 152 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 221.3 ms