RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 C7orf33Q8WU49 177 aa10.13□□□□□ -0.79
SYNE1-227ENST00000489156 DIRC1Q969H9 104 aa10.13□□□□□ -0.79
SYNE1-227ENST00000489156 H3BT86 120 aa10.12□□□□□ -0.79
SYNE1-227ENST00000489156 SNCGO76070 127 aa10.12□□□□□ -0.79
SYNE1-227ENST00000489156 KRTAP7-1Q8IUC3 87 aa10.12□□□□□ -0.79
SYNE1-227ENST00000489156 ANKRD29Q8N6D5 301 aa10.12□□□□□ -0.79
SYNE1-227ENST00000489156 KCNQ1DNQ9H478 68 aa10.12□□□□□ -0.79
SYNE1-227ENST00000489156 C22orf24Q9Y442 160 aa10.11□□□□□ -0.79
SYNE1-227ENST00000489156 A0A087WYN8 130 aa10.1□□□□□ -0.79
SYNE1-227ENST00000489156 DNAL4O96015 105 aa10.1□□□□□ -0.79
SYNE1-227ENST00000489156 MRPL55Q7Z7F7 128 aaKnown RBP10.1□□□□□ -0.79
SYNE1-227ENST00000489156 IGKV2-24A0A0C4DH68 120 aa10.1□□□□□ -0.79
SYNE1-227ENST00000489156 ETDBQ3ZM63 59 aa10.09□□□□□ -0.79
SYNE1-227ENST00000489156 FAM19A5Q7Z5A7 132 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-227ENST00000489156 IGLV1-50A0A075B6I6 118 aa10.08□□□□□ -0.8
SYNE1-227ENST00000489156 LINC00575Q6W349 94 aa10.08□□□□□ -0.8
SYNE1-227ENST00000489156 LINC00167Q96N53 147 aa10.08□□□□□ -0.8
SYNE1-227ENST00000489156 KRTAP10-1P60331 282 aa10.07□□□□□ -0.8
SYNE1-227ENST00000489156 TEN1Q86WV5 123 aa10.07□□□□□ -0.8
SYNE1-227ENST00000489156 EPPK1P58107 5090 aaKnown RBP10.06□□□□□ -0.8
SYNE1-227ENST00000489156 ELOF1P60002 83 aaKnown RBP10.06□□□□□ -0.8
SYNE1-227ENST00000489156 A0A1W2PNN7 141 aa10.06□□□□□ -0.8
SYNE1-227ENST00000489156 PRYO14603 147 aa10.06□□□□□ -0.8
SYNE1-227ENST00000489156 COX7BP24311 80 aa10.06□□□□□ -0.8
SYNE1-227ENST00000489156 hADV29S1A0JD25 119 aa10.04□□□□□ -0.8
SYNE1-227ENST00000489156 BAALC-AS2P0C853 105 aa10.04□□□□□ -0.8
SYNE1-227ENST00000489156 LRP1BQ9NZR2 4599 aa10.04□□□□□ -0.8
SYNE1-227ENST00000489156 RPL37AP8A6NKH3 93 aa10.04□□□□□ -0.8
SYNE1-227ENST00000489156 CHTF8P0CG12 524 aa10.04□□□□□ -0.8
SYNE1-227ENST00000489156 OCIAD2Q56VL3 154 aa10.04□□□□□ -0.8
SYNE1-227ENST00000489156 DYNC1H1Q14204 4646 aaKnown RBP10.04□□□□□ -0.8
SYNE1-227ENST00000489156 SPRR1AP35321 89 aa10.03□□□□□ -0.8
SYNE1-227ENST00000489156 FAM30AQ9NZY2 134 aa10.02□□□□□ -0.8
SYNE1-227ENST00000489156 ORMDL1Q9P0S3 153 aa10.02□□□□□ -0.8
SYNE1-227ENST00000489156 PANO1I0J062 215 aa10.02□□□□□ -0.81
SYNE1-227ENST00000489156 K7ERU9 68 aa10.02□□□□□ -0.81
SYNE1-227ENST00000489156 LINC00528Q8N1L1 170 aa10.02□□□□□ -0.81
SYNE1-227ENST00000489156 EPM2AB3EWF7 344 aa10.01□□□□□ -0.81
SYNE1-227ENST00000489156 SPACA4Q8TDM5 124 aa10.01□□□□□ -0.81
SYNE1-227ENST00000489156 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-227ENST00000489156 KRTAP4-16G5E9R7 235 aaPredicted RBP10□□□□□ -0.81
SYNE1-227ENST00000489156 INAFM2P0DMQ5 153 aa10□□□□□ -0.81
SYNE1-227ENST00000489156 PPDPFLQ8WWR9 84 aa10□□□□□ -0.81
SYNE1-227ENST00000489156 DNAH8Q96JB1 4490 aa9.99□□□□□ -0.81
SYNE1-227ENST00000489156 H3BQ85 93 aa9.99□□□□□ -0.81
SYNE1-227ENST00000489156 J3QR89 54 aa9.99□□□□□ -0.81
SYNE1-227ENST00000489156 DPH3Q96FX2 82 aa9.99□□□□□ -0.81
SYNE1-227ENST00000489156 TMEM256-PLSCR3K7ERE1 68 aa9.98□□□□□ -0.81
SYNE1-227ENST00000489156 GHRHP01286 108 aa9.98□□□□□ -0.81
SYNE1-227ENST00000489156 REG3GQ6UW15 175 aa9.98□□□□□ -0.81
SYNE1-227ENST00000489156 ETDCA0A1B0GVM5 59 aa9.98□□□□□ -0.81
SYNE1-227ENST00000489156 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-227ENST00000489156 Q6ZRX8 168 aa9.98□□□□□ -0.81
SYNE1-227ENST00000489156 Q6ZSA8 131 aa9.98□□□□□ -0.81
SYNE1-227ENST00000489156 B5MCH6 92 aa9.96□□□□□ -0.81
SYNE1-227ENST00000489156 HAMPP81172 84 aa9.96□□□□□ -0.81
SYNE1-227ENST00000489156 DHRS4-AS1Q9P1J3 65 aa9.96□□□□□ -0.81
SYNE1-227ENST00000489156 TEX49A0A1B0GTD5 131 aa9.96□□□□□ -0.82
SYNE1-227ENST00000489156 Q6ZQY7 126 aa9.95□□□□□ -0.82
SYNE1-227ENST00000489156 PHF5AQ7RTV0 110 aaKnown RBP9.95□□□□□ -0.82
SYNE1-227ENST00000489156 UBE2BP63146 152 aa9.93□□□□□ -0.82
SYNE1-227ENST00000489156 SCXQ7RTU7 201 aa9.92□□□□□ -0.82
SYNE1-227ENST00000489156 CIRBP-AS1Q8TBR5 109 aa9.92□□□□□ -0.82
SYNE1-227ENST00000489156 PLAC8Q9NZF1 115 aa9.92□□□□□ -0.82
SYNE1-227ENST00000489156 XGP55808 180 aa9.91□□□□□ -0.82
SYNE1-227ENST00000489156 APOBP04114 4563 aaKnown RBP9.91□□□□□ -0.82
SYNE1-227ENST00000489156 OBSCN-AS1Q96MR7 158 aa9.91□□□□□ -0.82
SYNE1-227ENST00000489156 Q9BRP9 147 aa9.9□□□□□ -0.82
SYNE1-227ENST00000489156 JMJD7-PLA2G4BH0Y9G9 81 aa9.89□□□□□ -0.83
SYNE1-227ENST00000489156 H0Y9J4 135 aa9.89□□□□□ -0.83
SYNE1-227ENST00000489156 FAM19A1Q7Z5A9 133 aa9.87□□□□□ -0.83
SYNE1-227ENST00000489156 KRTAP11-1Q8IUC1 163 aa9.87□□□□□ -0.83
SYNE1-227ENST00000489156 CDK2AP2O75956 126 aa9.85□□□□□ -0.83
SYNE1-227ENST00000489156 BCE1O60756 84 aa9.84□□□□□ -0.83
SYNE1-227ENST00000489156 SMCR5Q8TEV8 140 aa9.84□□□□□ -0.83
SYNE1-227ENST00000489156 KIAA1109Q2LD37 5005 aa9.83□□□□□ -0.84
SYNE1-227ENST00000489156 LAMTOR3Q9UHA4 124 aa9.83□□□□□ -0.84
SYNE1-227ENST00000489156 SMR3BP02814 79 aaPredicted RBP9.83□□□□□ -0.84
SYNE1-227ENST00000489156 IGLV5-48A0A075B6I7 105 aa9.82□□□□□ -0.84
SYNE1-227ENST00000489156 FAM240AA0A1B0GVK7 77 aa9.82□□□□□ -0.84
SYNE1-227ENST00000489156 PRLHP81277 87 aa9.82□□□□□ -0.84
SYNE1-227ENST00000489156 RBM3P98179 157 aaKnown RBP9.81□□□□□ -0.84
SYNE1-227ENST00000489156 HSPG2P98160 4391 aa9.81□□□□□ -0.84
SYNE1-227ENST00000489156 ERC2-IT1O76042 136 aa9.81□□□□□ -0.84
SYNE1-227ENST00000489156 UBE2AP49459 152 aa9.81□□□□□ -0.84
SYNE1-227ENST00000489156 NDUFV3P56181 108 aaKnown RBP9.81□□□□□ -0.84
SYNE1-227ENST00000489156 LINC01547P58512 204 aaPredicted RBP9.81□□□□□ -0.84
SYNE1-227ENST00000489156 C14orf132Q9NPU4 83 aa9.81□□□□□ -0.84
SYNE1-227ENST00000489156 BIRC6Q9NR09 4857 aa9.8□□□□□ -0.84
SYNE1-227ENST00000489156 Q8N377 158 aa9.8□□□□□ -0.84
SYNE1-227ENST00000489156 ACYP1P07311 99 aa9.79□□□□□ -0.84
SYNE1-227ENST00000489156 RYR1P21817 5038 aa9.79□□□□□ -0.84
SYNE1-227ENST00000489156 KRTAP13-1Q8IUC0 172 aa9.79□□□□□ -0.84
SYNE1-227ENST00000489156 HIGD2AQ9BW72 106 aa9.79□□□□□ -0.84
SYNE1-227ENST00000489156 DEFB105AQ8NG35 78 aa9.78□□□□□ -0.84
SYNE1-227ENST00000489156 VPS25Q9BRG1 176 aa9.78□□□□□ -0.84
SYNE1-227ENST00000489156 PDE6GP18545 87 aa9.77□□□□□ -0.85
SYNE1-227ENST00000489156 PSORS1C2Q9UIG4 136 aa9.77□□□□□ -0.85
SYNE1-227ENST00000489156 ST20-AS1Q8NBB2 130 aa9.76□□□□□ -0.85
SYNE1-227ENST00000489156 DSCR8Q96T75 97 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms