RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 PKIGQ9Y2B9 76 aa9.06□□□□□ -0.96
CUX1-209ENST00000487284 ZNF73O43830 326 aaPredicted RBP9.05□□□□□ -0.96
CUX1-209ENST00000487284 DIRC1Q969H9 104 aa9.05□□□□□ -0.96
CUX1-209ENST00000487284 IGLV5-52A0A0A0MRZ9 124 aa9.04□□□□□ -0.96
CUX1-209ENST00000487284 TRBV7-6A0A0J9YX20 115 aa9.04□□□□□ -0.96
CUX1-209ENST00000487284 K7ERU9 68 aa9.03□□□□□ -0.96
CUX1-209ENST00000487284 DNAL4O96015 105 aa9.03□□□□□ -0.96
CUX1-209ENST00000487284 LINC00167Q96N53 147 aa9.03□□□□□ -0.96
CUX1-209ENST00000487284 LINC00575Q6W349 94 aa9.03□□□□□ -0.96
CUX1-209ENST00000487284 KCNQ1DNQ9H478 68 aa9.03□□□□□ -0.96
CUX1-209ENST00000487284 FAM19A5Q7Z5A7 132 aaPredicted RBP9.02□□□□□ -0.97
CUX1-209ENST00000487284 PPDPFLQ8WWR9 84 aa9.02□□□□□ -0.97
CUX1-209ENST00000487284 C22orf24Q9Y442 160 aa9.02□□□□□ -0.97
CUX1-209ENST00000487284 IGKV2-24A0A0C4DH68 120 aa9.01□□□□□ -0.97
CUX1-209ENST00000487284 A0A1B0GVY2 172 aa9.01□□□□□ -0.97
CUX1-209ENST00000487284 BAALC-AS2P0C853 105 aa9.01□□□□□ -0.97
CUX1-209ENST00000487284 ELOF1P60002 83 aaKnown RBP9.01□□□□□ -0.97
CUX1-209ENST00000487284 SDIM1Q6ZPB5 146 aa9.01□□□□□ -0.97
CUX1-209ENST00000487284 MRPL55Q7Z7F7 128 aaKnown RBP9.01□□□□□ -0.97
CUX1-209ENST00000487284 IGLV1-50A0A075B6I6 118 aa9□□□□□ -0.97
CUX1-209ENST00000487284 COX7BP24311 80 aa9□□□□□ -0.97
CUX1-209ENST00000487284 PKHD1P08F94 4074 aa9□□□□□ -0.97
CUX1-209ENST00000487284 PRYO14603 147 aa8.99□□□□□ -0.97
CUX1-209ENST00000487284 SNCGO76070 127 aa8.99□□□□□ -0.97
CUX1-209ENST00000487284 A0A1W2PNN7 141 aa8.99□□□□□ -0.97
CUX1-209ENST00000487284 DYNC1H1Q14204 4646 aaKnown RBP8.98□□□□□ -0.97
CUX1-209ENST00000487284 DNAH8Q96JB1 4490 aa8.98□□□□□ -0.97
CUX1-209ENST00000487284 hADV29S1A0JD25 119 aa8.98□□□□□ -0.97
CUX1-209ENST00000487284 CHTF8P0CG12 524 aa8.98□□□□□ -0.97
CUX1-209ENST00000487284 LINC00528Q8N1L1 170 aa8.98□□□□□ -0.97
CUX1-209ENST00000487284 ORMDL1Q9P0S3 153 aa8.98□□□□□ -0.97
CUX1-209ENST00000487284 LINC00474Q9P2X8 69 aa8.98□□□□□ -0.97
CUX1-209ENST00000487284 RPL37AP8A6NKH3 93 aa8.97□□□□□ -0.97
CUX1-209ENST00000487284 J3QR89 54 aa8.97□□□□□ -0.97
CUX1-209ENST00000487284 SPRR1AP35321 89 aa8.97□□□□□ -0.97
CUX1-209ENST00000487284 LRP1BQ9NZR2 4599 aa8.97□□□□□ -0.97
CUX1-209ENST00000487284 TEX49A0A1B0GTD5 131 aa8.96□□□□□ -0.97
CUX1-209ENST00000487284 KRTAP4-16G5E9R7 235 aaPredicted RBP8.96□□□□□ -0.97
CUX1-209ENST00000487284 PANO1I0J062 215 aa8.95□□□□□ -0.98
CUX1-209ENST00000487284 KRTAP10-1P60331 282 aa8.93□□□□□ -0.98
CUX1-209ENST00000487284 SPACA4Q8TDM5 124 aa8.93□□□□□ -0.98
CUX1-209ENST00000487284 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.93□□□□□ -0.98
CUX1-209ENST00000487284 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.92□□□□□ -0.98
CUX1-209ENST00000487284 Q6ZRX8 168 aa8.92□□□□□ -0.98
CUX1-209ENST00000487284 EPM2AB3EWF7 344 aa8.91□□□□□ -0.98
CUX1-209ENST00000487284 B5MCH6 92 aa8.91□□□□□ -0.98
CUX1-209ENST00000487284 TMEM256-PLSCR3K7ERE1 68 aa8.91□□□□□ -0.98
CUX1-209ENST00000487284 REG3GQ6UW15 175 aa8.91□□□□□ -0.98
CUX1-209ENST00000487284 Q6ZQY7 126 aa8.91□□□□□ -0.98
CUX1-209ENST00000487284 EPPK1P58107 5090 aaKnown RBP8.91□□□□□ -0.98
CUX1-209ENST00000487284 ETDCA0A1B0GVM5 59 aa8.9□□□□□ -0.98
CUX1-209ENST00000487284 INAFM2P0DMQ5 153 aa8.9□□□□□ -0.98
CUX1-209ENST00000487284 H3BQ85 93 aa8.9□□□□□ -0.99
CUX1-209ENST00000487284 OBSCN-AS1Q96MR7 158 aa8.9□□□□□ -0.99
CUX1-209ENST00000487284 PHF5AQ7RTV0 110 aaKnown RBP8.89□□□□□ -0.99
CUX1-209ENST00000487284 FAM30AQ9NZY2 134 aa8.89□□□□□ -0.99
CUX1-209ENST00000487284 DHRS4-AS1Q9P1J3 65 aa8.88□□□□□ -0.99
CUX1-209ENST00000487284 GHRHP01286 108 aa8.86□□□□□ -0.99
CUX1-209ENST00000487284 Q6ZSA8 131 aa8.86□□□□□ -0.99
CUX1-209ENST00000487284 DPH3Q96FX2 82 aa8.86□□□□□ -0.99
CUX1-209ENST00000487284 Q9BRP9 147 aa8.86□□□□□ -0.99
CUX1-209ENST00000487284 APOBP04114 4563 aaKnown RBP8.86□□□□□ -0.99
CUX1-209ENST00000487284 KRTAP11-1Q8IUC1 163 aa8.86□□□□□ -0.99
CUX1-209ENST00000487284 JMJD7-PLA2G4BH0Y9G9 81 aa8.85□□□□□ -0.99
CUX1-209ENST00000487284 UBE2BP63146 152 aa8.85□□□□□ -0.99
CUX1-209ENST00000487284 VPS25Q9BRG1 176 aa8.85□□□□□ -0.99
CUX1-209ENST00000487284 HAMPP81172 84 aa8.83□□□□□ -1
CUX1-209ENST00000487284 PLAC8Q9NZF1 115 aa8.83□□□□□ -1
CUX1-209ENST00000487284 BIRC6Q9NR09 4857 aa8.82□□□□□ -1
CUX1-209ENST00000487284 FAM240AA0A1B0GVK7 77 aa8.82□□□□□ -1
CUX1-209ENST00000487284 C14orf132Q9NPU4 83 aa8.82□□□□□ -1
CUX1-209ENST00000487284 SCXQ7RTU7 201 aa8.82□□□□□ -1
CUX1-209ENST00000487284 CIRBP-AS1Q8TBR5 109 aa8.82□□□□□ -1
CUX1-209ENST00000487284 FAM19A1Q7Z5A9 133 aa8.81□□□□□ -1
CUX1-209ENST00000487284 SMCR5Q8TEV8 140 aa8.81□□□□□ -1
CUX1-209ENST00000487284 H0Y9J4 135 aa8.8□□□□□ -1
CUX1-209ENST00000487284 CDIP1Q9H305 208 aa8.8□□□□□ -1
CUX1-209ENST00000487284 IGLV5-48A0A075B6I7 105 aa8.79□□□□□ -1
CUX1-209ENST00000487284 ERC2-IT1O76042 136 aa8.79□□□□□ -1
CUX1-209ENST00000487284 LINC01547P58512 204 aaPredicted RBP8.79□□□□□ -1
CUX1-209ENST00000487284 PRLHP81277 87 aa8.79□□□□□ -1
CUX1-209ENST00000487284 LAMTOR3Q9UHA4 124 aa8.79□□□□□ -1
CUX1-209ENST00000487284 A0A1B0GV72 72 aa8.78□□□□□ -1
CUX1-209ENST00000487284 ACYP1P07311 99 aa8.78□□□□□ -1
CUX1-209ENST00000487284 NDUFV3P56181 108 aaKnown RBP8.78□□□□□ -1
CUX1-209ENST00000487284 Q8N377 158 aa8.78□□□□□ -1
CUX1-209ENST00000487284 BCE1O60756 84 aa8.77□□□□□ -1.01
CUX1-209ENST00000487284 RBM3P98179 157 aaKnown RBP8.77□□□□□ -1.01
CUX1-209ENST00000487284 LOC110117498A0A087WWA1 95 aa8.76□□□□□ -1.01
CUX1-209ENST00000487284 XGP55808 180 aa8.76□□□□□ -1.01
CUX1-209ENST00000487284 GAGE2AQ6NT46 116 aa8.76□□□□□ -1.01
CUX1-209ENST00000487284 ST20-AS1Q8NBB2 130 aa8.76□□□□□ -1.01
CUX1-209ENST00000487284 CCKP06307 115 aa8.75□□□□□ -1.01
CUX1-209ENST00000487284 KRTAP13-1Q8IUC0 172 aa8.75□□□□□ -1.01
CUX1-209ENST00000487284 DEFB105AQ8NG35 78 aa8.74□□□□□ -1.01
CUX1-209ENST00000487284 UBE2AP49459 152 aa8.73□□□□□ -1.01
CUX1-209ENST00000487284 Q6ZQT0 140 aa8.73□□□□□ -1.01
CUX1-209ENST00000487284 HIGD2AQ9BW72 106 aa8.73□□□□□ -1.01
CUX1-209ENST00000487284 TRBV7-4A0A0J9YYF1 115 aa8.73□□□□□ -1.01
CUX1-209ENST00000487284 FAT1Q14517 4588 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 269.4 ms