RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 Q8N377 158 aa3.92□□□□□ -1.78
HDAC3-207ENST00000475549 PMCHL2Q9BQD1 86 aa3.92□□□□□ -1.78
HDAC3-207ENST00000475549 IGLV9-49A0A0B4J1Y8 123 aa3.91□□□□□ -1.78
HDAC3-207ENST00000475549 TRBV10-2A0A0K0K1G8 114 aa3.91□□□□□ -1.78
HDAC3-207ENST00000475549 J3QQQ9 107 aa3.91□□□□□ -1.78
HDAC3-207ENST00000475549 LEPROTL1O95214 131 aa3.91□□□□□ -1.78
HDAC3-207ENST00000475549 DDTP30046 118 aa3.91□□□□□ -1.78
HDAC3-207ENST00000475549 MOBPQ13875 183 aa3.91□□□□□ -1.78
HDAC3-207ENST00000475549 KRTAP19-4Q3LI73 84 aa3.91□□□□□ -1.78
HDAC3-207ENST00000475549 Q6ZRX8 168 aa3.91□□□□□ -1.78
HDAC3-207ENST00000475549 KRTAP19-1Q8IUB9 90 aa3.91□□□□□ -1.78
HDAC3-207ENST00000475549 COLCA2A8K830 154 aa3.9□□□□□ -1.79
HDAC3-207ENST00000475549 FABP4P15090 132 aa3.9□□□□□ -1.79
HDAC3-207ENST00000475549 PLNP26678 52 aa3.9□□□□□ -1.79
HDAC3-207ENST00000475549 SSBP3-AS1Q7Z2R9 100 aa3.9□□□□□ -1.79
HDAC3-207ENST00000475549 ST20-AS1Q8NBB2 130 aa3.9□□□□□ -1.79
HDAC3-207ENST00000475549 MAP1LC3CQ9BXW4 147 aa3.9□□□□□ -1.79
HDAC3-207ENST00000475549 A0A0J9YXY3 114 aa3.89□□□□□ -1.79
HDAC3-207ENST00000475549 DPM2O94777 84 aa3.89□□□□□ -1.79
HDAC3-207ENST00000475549 NDUFC2O95298 119 aa3.89□□□□□ -1.79
HDAC3-207ENST00000475549 IGKCP01834 107 aa3.89□□□□□ -1.79
HDAC3-207ENST00000475549 RPS29P62273 56 aaKnown RBP3.89□□□□□ -1.79
HDAC3-207ENST00000475549 SPANXB1Q9NS25 103 aaPredicted RBP3.89□□□□□ -1.79
HDAC3-207ENST00000475549 FSIP2Q5CZC0 6907 aa3.89□□□□□ -1.79
HDAC3-207ENST00000475549 ZNF73O43830 326 aaPredicted RBP3.88□□□□□ -1.79
HDAC3-207ENST00000475549 LGALS3P17931 250 aaKnown RBP3.88□□□□□ -1.79
HDAC3-207ENST00000475549 NMUP48645 174 aa3.88□□□□□ -1.79
HDAC3-207ENST00000475549 NPC2P61916 151 aa3.88□□□□□ -1.79
HDAC3-207ENST00000475549 SLC7A5P1Q8MH63 180 aa3.88□□□□□ -1.79
HDAC3-207ENST00000475549 LITAFQ99732 161 aa3.88□□□□□ -1.79
HDAC3-207ENST00000475549 HSPB8Q9UJY1 196 aa3.88□□□□□ -1.79
HDAC3-207ENST00000475549 TRAV23DV6A0A075B6W5 121 aa3.87□□□□□ -1.79
HDAC3-207ENST00000475549 SLC25A20O43772 301 aa3.87□□□□□ -1.79
HDAC3-207ENST00000475549 S100A7L2Q5SY68 101 aa3.87□□□□□ -1.79
HDAC3-207ENST00000475549 KRTAP9-9Q9BYP9 154 aa3.87□□□□□ -1.79
HDAC3-207ENST00000475549 KRTAP9-4Q9BYQ2 154 aa3.87□□□□□ -1.79
HDAC3-207ENST00000475549 E9PLD3 99 aa3.86□□□□□ -1.79
HDAC3-207ENST00000475549 SEC61BP60468 96 aaKnown RBP3.86□□□□□ -1.79
HDAC3-207ENST00000475549 HERVK_113P61574 105 aa3.86□□□□□ -1.79
HDAC3-207ENST00000475549 S100A12P80511 92 aa3.86□□□□□ -1.79
HDAC3-207ENST00000475549 KRTAP19-2Q3LHN2 52 aa3.86□□□□□ -1.79
HDAC3-207ENST00000475549 SYS1-DBNDD2H3BUS1 97 aa3.85□□□□□ -1.79
HDAC3-207ENST00000475549 SPRR1BP22528 89 aa3.85□□□□□ -1.79
HDAC3-207ENST00000475549 JOSD1Q15040 202 aaPredicted RBP3.85□□□□□ -1.79
HDAC3-207ENST00000475549 LINC00308Q8TCZ7 52 aa3.85□□□□□ -1.79
HDAC3-207ENST00000475549 MIEN1Q9BRT3 115 aa3.85□□□□□ -1.79
HDAC3-207ENST00000475549 TTTY13Q9BZ97 58 aa3.85□□□□□ -1.79
HDAC3-207ENST00000475549 LINC01547P58512 204 aaPredicted RBP3.84□□□□□ -1.79
HDAC3-207ENST00000475549 C9orf153Q5TBE3 101 aa3.84□□□□□ -1.79
HDAC3-207ENST00000475549 C5orf52A6NGY3 159 aa3.83□□□□□ -1.8
HDAC3-207ENST00000475549 HIST1H2BKO60814 126 aa3.83□□□□□ -1.8
HDAC3-207ENST00000475549 HIST1H2BJP06899 126 aa3.83□□□□□ -1.8
HDAC3-207ENST00000475549 HIST1H2BOP23527 126 aa3.83□□□□□ -1.8
HDAC3-207ENST00000475549 HIST1H2BBP33778 126 aa3.83□□□□□ -1.8
HDAC3-207ENST00000475549 HIST1H2BDP58876 126 aa3.83□□□□□ -1.8
HDAC3-207ENST00000475549 HIST1H2BCP62807 126 aa3.83□□□□□ -1.8
HDAC3-207ENST00000475549 HIST2H2BEQ16778 126 aa3.83□□□□□ -1.8
HDAC3-207ENST00000475549 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.83□□□□□ -1.8
HDAC3-207ENST00000475549 LINC01545Q5VT33 79 aa3.83□□□□□ -1.8
HDAC3-207ENST00000475549 HRCT1Q6UXD1 115 aa3.83□□□□□ -1.8
HDAC3-207ENST00000475549 HIST1H2BHQ93079 126 aa3.83□□□□□ -1.8
HDAC3-207ENST00000475549 HIST1H2BNQ99877 126 aa3.83□□□□□ -1.8
HDAC3-207ENST00000475549 HIST1H2BMQ99879 126 aa3.83□□□□□ -1.8
HDAC3-207ENST00000475549 SPANXCQ9NY87 97 aa3.83□□□□□ -1.8
HDAC3-207ENST00000475549 TIMM17BO60830 172 aa3.82□□□□□ -1.8
HDAC3-207ENST00000475549 OR13C6PQ8NH95 151 aa3.82□□□□□ -1.8
HDAC3-207ENST00000475549 A0A0G2JQZ4 141 aa3.81□□□□□ -1.8
HDAC3-207ENST00000475549 ELOF1P60002 83 aaKnown RBP3.81□□□□□ -1.8
HDAC3-207ENST00000475549 PCOTHQ58A44 107 aa3.81□□□□□ -1.8
HDAC3-207ENST00000475549 SMIM29Q86T20 159 aa3.81□□□□□ -1.8
HDAC3-207ENST00000475549 KRTAP4-8A0A0G2JLE6 195 aa3.8□□□□□ -1.8
HDAC3-207ENST00000475549 C9orf92A6NGG3 77 aa3.8□□□□□ -1.8
HDAC3-207ENST00000475549 ZNF815PA8K554 130 aa3.8□□□□□ -1.8
HDAC3-207ENST00000475549 HINT1P49773 126 aaPredicted RBP3.8□□□□□ -1.8
HDAC3-207ENST00000475549 MT1HP80294 61 aa3.8□□□□□ -1.8
HDAC3-207ENST00000475549 C6orf99Q4VX62 202 aa3.8□□□□□ -1.8
HDAC3-207ENST00000475549 PET117Q6UWS5 81 aa3.8□□□□□ -1.8
HDAC3-207ENST00000475549 SPANXDQ9BXN6 97 aa3.8□□□□□ -1.8
HDAC3-207ENST00000475549 DHRS4-AS1Q9P1J3 65 aa3.8□□□□□ -1.8
HDAC3-207ENST00000475549 C3orf79P0CE67 100 aa3.79□□□□□ -1.8
HDAC3-207ENST00000475549 COX7BP24311 80 aa3.79□□□□□ -1.8
HDAC3-207ENST00000475549 Q1RN00 199 aa3.79□□□□□ -1.8
HDAC3-207ENST00000475549 DEFB105AQ8NG35 78 aa3.79□□□□□ -1.8
HDAC3-207ENST00000475549 LAMTOR3Q9UHA4 124 aa3.79□□□□□ -1.8
HDAC3-207ENST00000475549 H7C2G1 150 aa3.78□□□□□ -1.8
HDAC3-207ENST00000475549 LINC00518Q8N0U6 118 aa3.78□□□□□ -1.8
HDAC3-207ENST00000475549 CBY1Q9Y3M2 126 aa3.78□□□□□ -1.8
HDAC3-207ENST00000475549 IGLV8-61A0A075B6I0 122 aa3.77□□□□□ -1.81
HDAC3-207ENST00000475549 IGLV5-48A0A075B6I7 105 aa3.77□□□□□ -1.81
HDAC3-207ENST00000475549 TRBV7-6A0A0J9YX20 115 aa3.77□□□□□ -1.81
HDAC3-207ENST00000475549 TEX49A0A1B0GTD5 131 aa3.77□□□□□ -1.81
HDAC3-207ENST00000475549 CD164Q04900 197 aa3.77□□□□□ -1.81
HDAC3-207ENST00000475549 TAL2Q16559 108 aa3.77□□□□□ -1.81
HDAC3-207ENST00000475549 COA6Q5JTJ3 125 aaKnown RBP3.77□□□□□ -1.81
HDAC3-207ENST00000475549 C1orf195Q5TG92 126 aa3.77□□□□□ -1.81
HDAC3-207ENST00000475549 Q5XG85 94 aa3.77□□□□□ -1.81
HDAC3-207ENST00000475549 SLC25A34Q6PIV7 304 aa3.77□□□□□ -1.81
HDAC3-207ENST00000475549 PCP2Q8IVA1 136 aa3.77□□□□□ -1.81
HDAC3-207ENST00000475549 LIMD2Q9BT23 127 aa3.77□□□□□ -1.81
HDAC3-207ENST00000475549 PRO1933Q9H354 126 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms