RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 SMIM9A6NGZ8 99 aa4.75□□□□□ -1.65
COL28A1-202ENST00000430711 COX17Q14061 63 aa4.75□□□□□ -1.65
COL28A1-202ENST00000430711 A0A0J9YWU9 116 aa4.74□□□□□ -1.65
COL28A1-202ENST00000430711 Q6ZRU5 148 aa4.74□□□□□ -1.65
COL28A1-202ENST00000430711 SERP2Q8N6R1 65 aa4.74□□□□□ -1.65
COL28A1-202ENST00000430711 MGAM2Q2M2H8 2515 aa4.74□□□□□ -1.65
COL28A1-202ENST00000430711 TMEM256-PLSCR3K7ERE1 68 aa4.74□□□□□ -1.65
COL28A1-202ENST00000430711 KRTAP10-11P60412 298 aa4.74□□□□□ -1.65
COL28A1-202ENST00000430711 LELP1Q5T871 98 aa4.74□□□□□ -1.65
COL28A1-202ENST00000430711 Q6ZTC4 211 aa4.74□□□□□ -1.65
COL28A1-202ENST00000430711 C15orf56Q8N910 161 aa4.74□□□□□ -1.65
COL28A1-202ENST00000430711 Q8N9L7 120 aa4.74□□□□□ -1.65
COL28A1-202ENST00000430711 LAMTOR3Q9UHA4 124 aa4.74□□□□□ -1.65
COL28A1-202ENST00000430711 C9orf66Q5T8R8 295 aa4.73□□□□□ -1.65
COL28A1-202ENST00000430711 Q6ZVQ6 151 aa4.73□□□□□ -1.65
COL28A1-202ENST00000430711 FAM19A5Q7Z5A7 132 aaPredicted RBP4.73□□□□□ -1.65
COL28A1-202ENST00000430711 DNAH7Q8WXX0 4024 aa4.73□□□□□ -1.65
COL28A1-202ENST00000430711 VPREB1P12018 145 aa4.73□□□□□ -1.65
COL28A1-202ENST00000430711 LINC01547P58512 204 aaPredicted RBP4.73□□□□□ -1.65
COL28A1-202ENST00000430711 JMJD7-PLA2G4BH0Y9G9 81 aa4.72□□□□□ -1.65
COL28A1-202ENST00000430711 CASC10Q5T4H9 136 aa4.72□□□□□ -1.65
COL28A1-202ENST00000430711 HUWE1Q7Z6Z7 4374 aaKnown RBP4.72□□□□□ -1.65
COL28A1-202ENST00000430711 ZNF561-AS1K7EIQ3 104 aa4.72□□□□□ -1.65
COL28A1-202ENST00000430711 SPART-AS1P0CW21 52 aa4.72□□□□□ -1.65
COL28A1-202ENST00000430711 HAMPP81172 84 aa4.72□□□□□ -1.65
COL28A1-202ENST00000430711 RBM3P98179 157 aaKnown RBP4.72□□□□□ -1.65
COL28A1-202ENST00000430711 Q6ZRP5 223 aa4.72□□□□□ -1.65
COL28A1-202ENST00000430711 C20orf197Q8N268 126 aa4.72□□□□□ -1.65
COL28A1-202ENST00000430711 TENM2Q9NT68 2774 aa4.71□□□□□ -1.65
COL28A1-202ENST00000430711 ZNF73O43830 326 aaPredicted RBP4.71□□□□□ -1.66
COL28A1-202ENST00000430711 ESRGQ1W209 222 aa4.71□□□□□ -1.66
COL28A1-202ENST00000430711 KPRPQ5T749 579 aaPredicted RBP4.71□□□□□ -1.66
COL28A1-202ENST00000430711 MUC7Q8TAX7 377 aa4.71□□□□□ -1.66
COL28A1-202ENST00000430711 DPH3Q96FX2 82 aa4.71□□□□□ -1.66
COL28A1-202ENST00000430711 MIFP14174 115 aa4.71□□□□□ -1.66
COL28A1-202ENST00000430711 APOC4P55056 127 aa4.71□□□□□ -1.66
COL28A1-202ENST00000430711 SERTAD4-AS1Q5TG53 156 aa4.71□□□□□ -1.66
COL28A1-202ENST00000430711 SNURFQ9Y675 71 aa4.71□□□□□ -1.66
COL28A1-202ENST00000430711 PRKDCP78527 4128 aaKnown RBP4.7□□□□□ -1.66
COL28A1-202ENST00000430711 FAM168BA1KXE4 195 aa4.7□□□□□ -1.66
COL28A1-202ENST00000430711 LOC110117498A0A087WWA1 95 aa4.69□□□□□ -1.66
COL28A1-202ENST00000430711 ELOF1P60002 83 aaKnown RBP4.69□□□□□ -1.66
COL28A1-202ENST00000430711 CAMK2N2Q96S95 79 aa4.69□□□□□ -1.66
COL28A1-202ENST00000430711 H3BS24 57 aa4.69□□□□□ -1.66
COL28A1-202ENST00000430711 PRB2P02812 416 aaPredicted RBP4.69□□□□□ -1.66
COL28A1-202ENST00000430711 KRTAP7-1Q8IUC3 87 aa4.69□□□□□ -1.66
COL28A1-202ENST00000430711 DIRC1Q969H9 104 aa4.69□□□□□ -1.66
COL28A1-202ENST00000430711 RMI2Q96E14 147 aa4.69□□□□□ -1.66
COL28A1-202ENST00000430711 TM2D3Q9BRN9 247 aa4.69□□□□□ -1.66
COL28A1-202ENST00000430711 A0A0G2JQZ4 141 aa4.68□□□□□ -1.66
COL28A1-202ENST00000430711 TRBV7-4A0A0J9YYF1 115 aa4.68□□□□□ -1.66
COL28A1-202ENST00000430711 A0A1W2PNN7 141 aa4.68□□□□□ -1.66
COL28A1-202ENST00000430711 BPY2O14599 106 aa4.68□□□□□ -1.66
COL28A1-202ENST00000430711 UBL5Q9BZL1 73 aa4.68□□□□□ -1.66
COL28A1-202ENST00000430711 GVQW2A0A096LPI5 108 aaPredicted RBP4.68□□□□□ -1.66
COL28A1-202ENST00000430711 COX7BP24311 80 aa4.68□□□□□ -1.66
COL28A1-202ENST00000430711 C4orf26Q17RF5 130 aa4.68□□□□□ -1.66
COL28A1-202ENST00000430711 J3KT08 172 aa4.67□□□□□ -1.66
COL28A1-202ENST00000430711 RPL37AP8A6NKH3 93 aa4.67□□□□□ -1.66
COL28A1-202ENST00000430711 C3orf84H3BNL1 204 aa4.67□□□□□ -1.66
COL28A1-202ENST00000430711 H7BZZ5 65 aa4.67□□□□□ -1.66
COL28A1-202ENST00000430711 Q5XG85 94 aa4.67□□□□□ -1.66
COL28A1-202ENST00000430711 DEFB105AQ8NG35 78 aa4.67□□□□□ -1.66
COL28A1-202ENST00000430711 IGKV2D-24A0A075B6R9 120 aa4.66□□□□□ -1.66
COL28A1-202ENST00000430711 ST20-AS1Q8NBB2 130 aa4.66□□□□□ -1.66
COL28A1-202ENST00000430711 TMEM258P61165 79 aa4.65□□□□□ -1.66
COL28A1-202ENST00000430711 C7orf33Q8WU49 177 aa4.65□□□□□ -1.66
COL28A1-202ENST00000430711 EPPK1P58107 5090 aaKnown RBP4.65□□□□□ -1.67
COL28A1-202ENST00000430711 NDUFC2-KCTD14E9PQ53 114 aa4.64□□□□□ -1.67
COL28A1-202ENST00000430711 ATP5EP2Q5VTU8 51 aa4.64□□□□□ -1.67
COL28A1-202ENST00000430711 Q9BRP9 147 aa4.64□□□□□ -1.67
COL28A1-202ENST00000430711 STAB2Q8WWQ8 2551 aa4.64□□□□□ -1.67
COL28A1-202ENST00000430711 ERC2-IT1O76042 136 aa4.64□□□□□ -1.67
COL28A1-202ENST00000430711 Q8N377 158 aa4.64□□□□□ -1.67
COL28A1-202ENST00000430711 TRBV7-6A0A0J9YX20 115 aa4.63□□□□□ -1.67
COL28A1-202ENST00000430711 M0R378 163 aa4.63□□□□□ -1.67
COL28A1-202ENST00000430711 EGFEM1PQ0D2K5 195 aa4.63□□□□□ -1.67
COL28A1-202ENST00000430711 HRCT1Q6UXD1 115 aa4.63□□□□□ -1.67
COL28A1-202ENST00000430711 IGKV4-1P06312 121 aa4.63□□□□□ -1.67
COL28A1-202ENST00000430711 F8WEM9 126 aa4.62□□□□□ -1.67
COL28A1-202ENST00000430711 TRAV7A0A075B6U4 112 aa4.61□□□□□ -1.67
COL28A1-202ENST00000430711 DEFB131BA0A096LNP1 70 aa4.61□□□□□ -1.67
COL28A1-202ENST00000430711 C1orf43Q9BWL3 253 aa4.61□□□□□ -1.67
COL28A1-202ENST00000430711 A0A1W2PNM2 257 aa4.61□□□□□ -1.67
COL28A1-202ENST00000430711 RPS28P62857 69 aaKnown RBP4.61□□□□□ -1.67
COL28A1-202ENST00000430711 SYCNQ0VAF6 134 aa4.61□□□□□ -1.67
COL28A1-202ENST00000430711 FAM236DA0A1B0GTK5 79 aa4.6□□□□□ -1.67
COL28A1-202ENST00000430711 KRTAP4-16G5E9R7 235 aaPredicted RBP4.6□□□□□ -1.67
COL28A1-202ENST00000430711 FAM236CP0DP71 79 aa4.6□□□□□ -1.67
COL28A1-202ENST00000430711 CXCL6P80162 114 aa4.6□□□□□ -1.67
COL28A1-202ENST00000430711 FAM229BQ4G0N7 80 aa4.6□□□□□ -1.67
COL28A1-202ENST00000430711 LINC00474Q9P2X8 69 aa4.6□□□□□ -1.67
COL28A1-202ENST00000430711 LINC00588Q9Y4M8 146 aa4.6□□□□□ -1.67
COL28A1-202ENST00000430711 PLECQ15149 4684 aaKnown RBP4.59□□□□□ -1.67
COL28A1-202ENST00000430711 NREPQ16612 68 aa4.59□□□□□ -1.67
COL28A1-202ENST00000430711 LINC01556Q5JQF7 62 aa4.59□□□□□ -1.67
COL28A1-202ENST00000430711 FP248Q71RG6 208 aaPredicted RBP4.59□□□□□ -1.67
COL28A1-202ENST00000430711 KLKP1Q107X0 134 aa4.58□□□□□ -1.68
COL28A1-202ENST00000430711 KRTAP1-5Q9BYS1 174 aa4.58□□□□□ -1.68
COL28A1-202ENST00000430711 KCNQ1DNQ9H478 68 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms