RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 Q6ZRU5 148 aa5.81□□□□□ -1.48
USP40-203ENST00000427112 BPY2O14599 106 aa5.81□□□□□ -1.48
USP40-203ENST00000427112 DEFB116Q30KQ4 102 aa5.81□□□□□ -1.48
USP40-203ENST00000427112 SPART-AS1P0CW21 52 aa5.81□□□□□ -1.48
USP40-203ENST00000427112 CMC4P56277 68 aaPredicted RBP5.79□□□□□ -1.48
USP40-203ENST00000427112 KPRPQ5T749 579 aaPredicted RBP5.79□□□□□ -1.48
USP40-203ENST00000427112 Q6ZVQ6 151 aa5.79□□□□□ -1.48
USP40-203ENST00000427112 LINC01600Q96MT4 127 aa5.79□□□□□ -1.48
USP40-203ENST00000427112 A0A1B0GUV1 79 aa5.79□□□□□ -1.48
USP40-203ENST00000427112 TMEM254Q8TBM7 123 aa5.79□□□□□ -1.48
USP40-203ENST00000427112 PRR15LQ9BU68 103 aa5.79□□□□□ -1.48
USP40-203ENST00000427112 FAM168BA1KXE4 195 aa5.79□□□□□ -1.48
USP40-203ENST00000427112 LINC01547P58512 204 aaPredicted RBP5.79□□□□□ -1.48
USP40-203ENST00000427112 ESRGQ1W209 222 aa5.79□□□□□ -1.48
USP40-203ENST00000427112 WIPF1O43516 503 aa5.78□□□□□ -1.48
USP40-203ENST00000427112 ZNF73O43830 326 aaPredicted RBP5.78□□□□□ -1.48
USP40-203ENST00000427112 DIRC1Q969H9 104 aa5.78□□□□□ -1.48
USP40-203ENST00000427112 TM2D3Q9BRN9 247 aa5.78□□□□□ -1.48
USP40-203ENST00000427112 LYPD5Q6UWN5 251 aa5.78□□□□□ -1.48
USP40-203ENST00000427112 Q8NAQ8 132 aa5.78□□□□□ -1.48
USP40-203ENST00000427112 HIGD2AQ9BW72 106 aa5.78□□□□□ -1.48
USP40-203ENST00000427112 A0A096LNI7 61 aa5.77□□□□□ -1.49
USP40-203ENST00000427112 CASC10Q5T4H9 136 aa5.77□□□□□ -1.49
USP40-203ENST00000427112 COX7BP24311 80 aa5.77□□□□□ -1.49
USP40-203ENST00000427112 APOC4P55056 127 aa5.77□□□□□ -1.49
USP40-203ENST00000427112 C9orf66Q5T8R8 295 aa5.77□□□□□ -1.49
USP40-203ENST00000427112 Q6ZQT0 140 aa5.77□□□□□ -1.49
USP40-203ENST00000427112 WFDC13Q8IUB5 93 aa5.77□□□□□ -1.49
USP40-203ENST00000427112 Q5XG85 94 aa5.76□□□□□ -1.49
USP40-203ENST00000427112 ANK2Q01484 3957 aa5.76□□□□□ -1.49
USP40-203ENST00000427112 NDUFS5O43920 106 aa5.76□□□□□ -1.49
USP40-203ENST00000427112 IGKV2-24A0A0C4DH68 120 aa5.75□□□□□ -1.49
USP40-203ENST00000427112 LYRM9A8MSI8 78 aa5.75□□□□□ -1.49
USP40-203ENST00000427112 PRYO14603 147 aa5.75□□□□□ -1.49
USP40-203ENST00000427112 MP68P56378 58 aa5.75□□□□□ -1.49
USP40-203ENST00000427112 ST20-AS1Q8NBB2 130 aa5.75□□□□□ -1.49
USP40-203ENST00000427112 MUC7Q8TAX7 377 aa5.75□□□□□ -1.49
USP40-203ENST00000427112 C16orf95Q9H693 158 aa5.75□□□□□ -1.49
USP40-203ENST00000427112 NDUFC1O43677 76 aa5.75□□□□□ -1.49
USP40-203ENST00000427112 LELP1Q5T871 98 aa5.75□□□□□ -1.49
USP40-203ENST00000427112 Q6ZRP5 223 aa5.75□□□□□ -1.49
USP40-203ENST00000427112 ATP5EP2Q5VTU8 51 aa5.74□□□□□ -1.49
USP40-203ENST00000427112 OBSCN-AS1Q96MR7 158 aa5.74□□□□□ -1.49
USP40-203ENST00000427112 A8MUN3 132 aa5.74□□□□□ -1.49
USP40-203ENST00000427112 MDFIQ99750 246 aa5.74□□□□□ -1.49
USP40-203ENST00000427112 SERTAD4-AS1Q5TG53 156 aa5.74□□□□□ -1.49
USP40-203ENST00000427112 NKAPP1Q8N9T2 125 aa5.74□□□□□ -1.49
USP40-203ENST00000427112 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.72□□□□□ -1.49
USP40-203ENST00000427112 DEFB131BA0A096LNP1 70 aa5.71□□□□□ -1.49
USP40-203ENST00000427112 H7BZZ5 65 aa5.71□□□□□ -1.49
USP40-203ENST00000427112 KRTAP10-11P60412 298 aa5.71□□□□□ -1.49
USP40-203ENST00000427112 LINC00612Q8N6U2 182 aa5.71□□□□□ -1.49
USP40-203ENST00000427112 IGLV6-57P01721 117 aa5.71□□□□□ -1.5
USP40-203ENST00000427112 UBE2BP63146 152 aa5.71□□□□□ -1.5
USP40-203ENST00000427112 COX17Q14061 63 aa5.71□□□□□ -1.5
USP40-203ENST00000427112 LINC00208Q96KT6 92 aa5.71□□□□□ -1.5
USP40-203ENST00000427112 C4orf48Q5BLP8 95 aa5.7□□□□□ -1.5
USP40-203ENST00000427112 VPREB1P12018 145 aa5.7□□□□□ -1.5
USP40-203ENST00000427112 C15orf56Q8N910 161 aa5.7□□□□□ -1.5
USP40-203ENST00000427112 ATP5EP56381 51 aaPredicted RBP5.69□□□□□ -1.5
USP40-203ENST00000427112 SYCNQ0VAF6 134 aa5.69□□□□□ -1.5
USP40-203ENST00000427112 C7orf33Q8WU49 177 aa5.68□□□□□ -1.5
USP40-203ENST00000427112 LYSTQ99698 3801 aa5.68□□□□□ -1.5
USP40-203ENST00000427112 H3BS24 57 aa5.68□□□□□ -1.5
USP40-203ENST00000427112 ERC2-IT1O76042 136 aa5.67□□□□□ -1.5
USP40-203ENST00000427112 FP248Q71RG6 208 aaPredicted RBP5.67□□□□□ -1.5
USP40-203ENST00000427112 C11orf45Q8TAV5 145 aa5.67□□□□□ -1.5
USP40-203ENST00000427112 PRLHP81277 87 aa5.67□□□□□ -1.5
USP40-203ENST00000427112 UBE2AP49459 152 aa5.66□□□□□ -1.5
USP40-203ENST00000427112 CD164Q04900 197 aa5.66□□□□□ -1.5
USP40-203ENST00000427112 LINC00167Q96N53 147 aa5.66□□□□□ -1.5
USP40-203ENST00000427112 DMBT1Q9UGM3 2413 aaPredicted RBP5.66□□□□□ -1.5
USP40-203ENST00000427112 ETDCA0A1B0GVM5 59 aa5.66□□□□□ -1.5
USP40-203ENST00000427112 PRR34Q9NV39 138 aa5.66□□□□□ -1.5
USP40-203ENST00000427112 HCG22E2RYF7 251 aa5.65□□□□□ -1.5
USP40-203ENST00000427112 M0R378 163 aa5.65□□□□□ -1.5
USP40-203ENST00000427112 ELOF1P60002 83 aaKnown RBP5.65□□□□□ -1.5
USP40-203ENST00000427112 PCOTHQ58A44 107 aa5.65□□□□□ -1.5
USP40-203ENST00000427112 SMIM29Q86T20 159 aa5.65□□□□□ -1.51
USP40-203ENST00000427112 H0Y9J4 135 aa5.64□□□□□ -1.51
USP40-203ENST00000427112 FAM229BQ4G0N7 80 aa5.64□□□□□ -1.51
USP40-203ENST00000427112 RPL37AP61513 92 aaKnown RBP5.64□□□□□ -1.51
USP40-203ENST00000427112 CHTF8P0CG12 524 aa5.63□□□□□ -1.51
USP40-203ENST00000427112 Q8N377 158 aa5.63□□□□□ -1.51
USP40-203ENST00000427112 DNAH10Q8IVF4 4471 aa5.63□□□□□ -1.51
USP40-203ENST00000427112 IGKV4-1P06312 121 aa5.63□□□□□ -1.51
USP40-203ENST00000427112 LINC00528Q8N1L1 170 aa5.63□□□□□ -1.51
USP40-203ENST00000427112 PDE6GP18545 87 aa5.62□□□□□ -1.51
USP40-203ENST00000427112 EGFEM1PQ0D2K5 195 aa5.62□□□□□ -1.51
USP40-203ENST00000427112 TGP01266 2768 aa5.61□□□□□ -1.51
USP40-203ENST00000427112 TRBV7-4A0A0J9YYF1 115 aa5.61□□□□□ -1.51
USP40-203ENST00000427112 SPAG11AQ6PDA7 123 aa5.61□□□□□ -1.51
USP40-203ENST00000427112 RBM12B-AS1Q9P1G2 102 aa5.61□□□□□ -1.51
USP40-203ENST00000427112 LOC110117498A0A087WWA1 95 aa5.61□□□□□ -1.51
USP40-203ENST00000427112 C1orf137Q5JT78 98 aa5.61□□□□□ -1.51
USP40-203ENST00000427112 Q9BRP9 147 aa5.61□□□□□ -1.51
USP40-203ENST00000427112 KRTAP21-3Q3LHN1 58 aa5.6□□□□□ -1.51
USP40-203ENST00000427112 PSCAO43653 123 aa5.6□□□□□ -1.51
USP40-203ENST00000427112 CDK2AP2O75956 126 aa5.6□□□□□ -1.51
USP40-203ENST00000427112 FLG2Q5D862 2391 aaPredicted RBP5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms