RNA–Protein interactions for RNA: ENST00000420482.5

PTPN4-202, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-202ENST00000420482 NPC2P61916 151 aa12.13□□□□□ -0.47
PTPN4-202ENST00000420482 SYS1-DBNDD2H3BUS1 97 aa12.12□□□□□ -0.47
PTPN4-202ENST00000420482 ZNF73O43830 326 aaPredicted RBP12.12□□□□□ -0.47
PTPN4-202ENST00000420482 RPS29P62273 56 aaKnown RBP12.12□□□□□ -0.47
PTPN4-202ENST00000420482 ADAMTSL4-AS1Q5T5F5 129 aa12.1□□□□□ -0.47
PTPN4-202ENST00000420482 MUC17Q685J3 4493 aa12.09□□□□□ -0.47
PTPN4-202ENST00000420482 C5orf52A6NGY3 159 aa12.09□□□□□ -0.47
PTPN4-202ENST00000420482 SOSTDC1Q6X4U4 206 aa12.09□□□□□ -0.47
PTPN4-202ENST00000420482 SPANXCQ9NY87 97 aa12.09□□□□□ -0.47
PTPN4-202ENST00000420482 HIST1H2BKO60814 126 aa12.07□□□□□ -0.48
PTPN4-202ENST00000420482 TIMM17BO60830 172 aa12.07□□□□□ -0.48
PTPN4-202ENST00000420482 HIST1H2BJP06899 126 aa12.07□□□□□ -0.48
PTPN4-202ENST00000420482 HIST1H2BOP23527 126 aa12.07□□□□□ -0.48
PTPN4-202ENST00000420482 HIST1H2BBP33778 126 aa12.07□□□□□ -0.48
PTPN4-202ENST00000420482 HIST1H2BDP58876 126 aa12.07□□□□□ -0.48
PTPN4-202ENST00000420482 HIST1H2BCP62807 126 aa12.07□□□□□ -0.48
PTPN4-202ENST00000420482 HIST2H2BEQ16778 126 aa12.07□□□□□ -0.48
PTPN4-202ENST00000420482 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.07□□□□□ -0.48
PTPN4-202ENST00000420482 C9orf153Q5TBE3 101 aa12.07□□□□□ -0.48
PTPN4-202ENST00000420482 PET117Q6UWS5 81 aa12.07□□□□□ -0.48
PTPN4-202ENST00000420482 OR13C6PQ8NH95 151 aa12.07□□□□□ -0.48
PTPN4-202ENST00000420482 HIST1H2BHQ93079 126 aa12.07□□□□□ -0.48
PTPN4-202ENST00000420482 HIST1H2BNQ99877 126 aa12.07□□□□□ -0.48
PTPN4-202ENST00000420482 HIST1H2BMQ99879 126 aa12.07□□□□□ -0.48
PTPN4-202ENST00000420482 SLC25A20O43772 301 aa12.06□□□□□ -0.48
PTPN4-202ENST00000420482 LINC01545Q5VT33 79 aa12.06□□□□□ -0.48
PTPN4-202ENST00000420482 LINC00308Q8TCZ7 52 aa12.05□□□□□ -0.48
PTPN4-202ENST00000420482 KRTAP13-3Q3SY46 172 aa12.04□□□□□ -0.48
PTPN4-202ENST00000420482 SLC25A34Q6PIV7 304 aa12.04□□□□□ -0.48
PTPN4-202ENST00000420482 ZNF815PA8K554 130 aa12.03□□□□□ -0.48
PTPN4-202ENST00000420482 EIF4EBP3O60516 100 aaPredicted RBP12.03□□□□□ -0.48
PTPN4-202ENST00000420482 LINC00518Q8N0U6 118 aa12.02□□□□□ -0.49
PTPN4-202ENST00000420482 Q8N377 158 aa12.02□□□□□ -0.49
PTPN4-202ENST00000420482 SPANXDQ9BXN6 97 aa12.02□□□□□ -0.49
PTPN4-202ENST00000420482 DHRS4-AS1Q9P1J3 65 aa12.02□□□□□ -0.49
PTPN4-202ENST00000420482 LITAFQ99732 161 aa12.01□□□□□ -0.49
PTPN4-202ENST00000420482 COPS9Q8WXC6 57 aa11.99□□□□□ -0.49
PTPN4-202ENST00000420482 ST20-AS1Q8NBB2 130 aa11.98□□□□□ -0.49
PTPN4-202ENST00000420482 SEC61BP60468 96 aaKnown RBP11.97□□□□□ -0.49
PTPN4-202ENST00000420482 C20orf202A1L168 122 aa11.96□□□□□ -0.49
PTPN4-202ENST00000420482 C3orf79P0CE67 100 aa11.96□□□□□ -0.49
PTPN4-202ENST00000420482 ASB16-AS1Q495Z4 193 aa11.96□□□□□ -0.49
PTPN4-202ENST00000420482 SCGB1D4Q6XE38 83 aa11.96□□□□□ -0.49
PTPN4-202ENST00000420482 LAMTOR3Q9UHA4 124 aa11.95□□□□□ -0.5
PTPN4-202ENST00000420482 COX7BP24311 80 aa11.94□□□□□ -0.5
PTPN4-202ENST00000420482 KRTDAPP60985 99 aa11.94□□□□□ -0.5
PTPN4-202ENST00000420482 LIMD2Q9BT23 127 aa11.94□□□□□ -0.5
PTPN4-202ENST00000420482 KRTAP9-6A0A140TA67 174 aa11.93□□□□□ -0.5
PTPN4-202ENST00000420482 SPRR1BP22528 89 aa11.93□□□□□ -0.5
PTPN4-202ENST00000420482 AKR1D1P51857 326 aa11.92□□□□□ -0.5
PTPN4-202ENST00000420482 ELOF1P60002 83 aaKnown RBP11.92□□□□□ -0.5
PTPN4-202ENST00000420482 C6orf99Q4VX62 202 aa11.91□□□□□ -0.5
PTPN4-202ENST00000420482 COA6Q5JTJ3 125 aaKnown RBP11.91□□□□□ -0.5
PTPN4-202ENST00000420482 TTTY13Q9BZ97 58 aa11.91□□□□□ -0.5
PTPN4-202ENST00000420482 IFITM1P13164 125 aa11.89□□□□□ -0.51
PTPN4-202ENST00000420482 TAL2Q16559 108 aa11.89□□□□□ -0.51
PTPN4-202ENST00000420482 TRBV7-6A0A0J9YX20 115 aa11.88□□□□□ -0.51
PTPN4-202ENST00000420482 Q6ZVH6 145 aa11.88□□□□□ -0.51
PTPN4-202ENST00000420482 TEX49A0A1B0GTD5 131 aa11.84□□□□□ -0.51
PTPN4-202ENST00000420482 A0A1B0GWB2 263 aa11.84□□□□□ -0.51
PTPN4-202ENST00000420482 A6NDN8 102 aa11.84□□□□□ -0.51
PTPN4-202ENST00000420482 DEFB105AQ8NG35 78 aa11.84□□□□□ -0.51
PTPN4-202ENST00000420482 XP32Q5T750 250 aa11.83□□□□□ -0.52
PTPN4-202ENST00000420482 HRCT1Q6UXD1 115 aa11.83□□□□□ -0.52
PTPN4-202ENST00000420482 PRO1933Q9H354 126 aa11.83□□□□□ -0.52
PTPN4-202ENST00000420482 LINC01547P58512 204 aaPredicted RBP11.81□□□□□ -0.52
PTPN4-202ENST00000420482 CD164Q04900 197 aa11.81□□□□□ -0.52
PTPN4-202ENST00000420482 Q1RN00 199 aa11.81□□□□□ -0.52
PTPN4-202ENST00000420482 ANKRD39Q53RE8 183 aa11.81□□□□□ -0.52
PTPN4-202ENST00000420482 A4D1N5 150 aa11.8□□□□□ -0.52
PTPN4-202ENST00000420482 SNRPEP62304 92 aaKnown RBP11.8□□□□□ -0.52
PTPN4-202ENST00000420482 ATOH7Q8N100 152 aa11.79□□□□□ -0.52
PTPN4-202ENST00000420482 NHP2Q9NX24 153 aaKnown RBP11.79□□□□□ -0.52
PTPN4-202ENST00000420482 TRAV13-2A0A0B4J235 113 aa11.78□□□□□ -0.52
PTPN4-202ENST00000420482 MUSTN1Q8IVN3 82 aa11.78□□□□□ -0.52
PTPN4-202ENST00000420482 H7C2G1 150 aa11.77□□□□□ -0.53
PTPN4-202ENST00000420482 PCP2Q8IVA1 136 aa11.75□□□□□ -0.53
PTPN4-202ENST00000420482 IGLV5-48A0A075B6I7 105 aa11.73□□□□□ -0.53
PTPN4-202ENST00000420482 HSBP1L1C9JCN9 74 aa11.71□□□□□ -0.53
PTPN4-202ENST00000420482 VAMP3Q15836 100 aa11.71□□□□□ -0.53
PTPN4-202ENST00000420482 S100A2P29034 98 aa11.7□□□□□ -0.54
PTPN4-202ENST00000420482 KRTAP4-1Q9BYQ7 146 aa11.7□□□□□ -0.54
PTPN4-202ENST00000420482 Q5XG85 94 aa11.69□□□□□ -0.54
PTPN4-202ENST00000420482 SMIM29Q86T20 159 aa11.69□□□□□ -0.54
PTPN4-202ENST00000420482 SMIM11BQ8TCY0 68 aa11.69□□□□□ -0.54
PTPN4-202ENST00000420482 C9orf92A6NGG3 77 aa11.68□□□□□ -0.54
PTPN4-202ENST00000420482 F8WEM9 126 aa11.66□□□□□ -0.54
PTPN4-202ENST00000420482 TCL1BO95988 128 aa11.63□□□□□ -0.55
PTPN4-202ENST00000420482 LCE2DQ5TA82 110 aaPredicted RBP11.63□□□□□ -0.55
PTPN4-202ENST00000420482 PCOTHQ58A44 107 aa11.62□□□□□ -0.55
PTPN4-202ENST00000420482 HIST3H2BBQ8N257 126 aa11.62□□□□□ -0.55
PTPN4-202ENST00000420482 HIST1H2BLQ99880 126 aa11.61□□□□□ -0.55
PTPN4-202ENST00000420482 C1orf195Q5TG92 126 aa11.6□□□□□ -0.55
PTPN4-202ENST00000420482 IGLV8-61A0A075B6I0 122 aa11.59□□□□□ -0.55
PTPN4-202ENST00000420482 S100A6P06703 90 aa11.59□□□□□ -0.55
PTPN4-202ENST00000420482 hADV29S1A0JD25 119 aa11.58□□□□□ -0.56
PTPN4-202ENST00000420482 LINC00575Q6W349 94 aa11.58□□□□□ -0.56
PTPN4-202ENST00000420482 A0A0G2JQZ4 141 aa11.55□□□□□ -0.56
PTPN4-202ENST00000420482 Q6JHZ5 121 aa11.55□□□□□ -0.56
PTPN4-202ENST00000420482 Q6ZQY7 126 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms