RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 GVQW2A0A096LPI5 108 aaPredicted RBP9.06□□□□□ -0.96
CCDC88A-204ENST00000413716 FAM104AQ969W3 186 aa9.06□□□□□ -0.96
CCDC88A-204ENST00000413716 A0A1B0GVX0 72 aa9.06□□□□□ -0.96
CCDC88A-204ENST00000413716 H3BNG1 76 aa9.05□□□□□ -0.96
CCDC88A-204ENST00000413716 GOLGB1Q14789 3259 aaKnown RBP9.05□□□□□ -0.96
CCDC88A-204ENST00000413716 IGLV5-37A0A075B6J1 123 aa9.05□□□□□ -0.96
CCDC88A-204ENST00000413716 SPANXA2-OT1Q8N9U9 137 aa9.05□□□□□ -0.96
CCDC88A-204ENST00000413716 SMR3AQ99954 134 aa9.05□□□□□ -0.96
CCDC88A-204ENST00000413716 IGLV5-48A0A075B6I7 105 aa9.04□□□□□ -0.96
CCDC88A-204ENST00000413716 EPG5Q9HCE0 2579 aa9.04□□□□□ -0.96
CCDC88A-204ENST00000413716 LINC00304Q8N9R0 145 aa9.04□□□□□ -0.96
CCDC88A-204ENST00000413716 C9orf92A6NGG3 77 aa9.03□□□□□ -0.96
CCDC88A-204ENST00000413716 LINC00315P59091 139 aa9.01□□□□□ -0.97
CCDC88A-204ENST00000413716 H7BZZ5 65 aa9□□□□□ -0.97
CCDC88A-204ENST00000413716 ZNF575Q86XF7 245 aa9□□□□□ -0.97
CCDC88A-204ENST00000413716 AVPP01185 164 aa8.99□□□□□ -0.97
CCDC88A-204ENST00000413716 NBDYA0A0U1RRE5 68 aa8.98□□□□□ -0.97
CCDC88A-204ENST00000413716 FAM168BA1KXE4 195 aa8.98□□□□□ -0.97
CCDC88A-204ENST00000413716 PLA2G2DQ9UNK4 145 aa8.98□□□□□ -0.97
CCDC88A-204ENST00000413716 WIPF1O43516 503 aa8.97□□□□□ -0.97
CCDC88A-204ENST00000413716 CAMK2N1Q7Z7J9 78 aa8.97□□□□□ -0.97
CCDC88A-204ENST00000413716 IGFL1Q6UW32 110 aa8.96□□□□□ -0.97
CCDC88A-204ENST00000413716 DMAC1Q96GE9 116 aa8.95□□□□□ -0.98
CCDC88A-204ENST00000413716 AKAP13Q12802 2813 aa8.94□□□□□ -0.98
CCDC88A-204ENST00000413716 LINC00588Q9Y4M8 146 aa8.94□□□□□ -0.98
CCDC88A-204ENST00000413716 CENPEQ02224 2701 aa8.92□□□□□ -0.98
CCDC88A-204ENST00000413716 KCNQ1DNQ9H478 68 aa8.92□□□□□ -0.98
CCDC88A-204ENST00000413716 Q8N1X5 172 aa8.91□□□□□ -0.98
CCDC88A-204ENST00000413716 DNAH10OSP0CZ25 163 aa8.89□□□□□ -0.99
CCDC88A-204ENST00000413716 DNAH12Q6ZR08 3092 aa8.88□□□□□ -0.99
CCDC88A-204ENST00000413716 HECTD1Q9ULT8 2610 aa8.88□□□□□ -0.99
CCDC88A-204ENST00000413716 IGLV1-50A0A075B6I6 118 aa8.88□□□□□ -0.99
CCDC88A-204ENST00000413716 A0A1B0GU33 70 aa8.86□□□□□ -0.99
CCDC88A-204ENST00000413716 Q75L30 129 aa8.85□□□□□ -0.99
CCDC88A-204ENST00000413716 ZNF861PO60384 105 aa8.85□□□□□ -0.99
CCDC88A-204ENST00000413716 LINC00528Q8N1L1 170 aa8.83□□□□□ -1
CCDC88A-204ENST00000413716 C15orf56Q8N910 161 aa8.83□□□□□ -1
CCDC88A-204ENST00000413716 HRES1P13985 223 aa8.82□□□□□ -1
CCDC88A-204ENST00000413716 LITAFQ99732 161 aa8.82□□□□□ -1
CCDC88A-204ENST00000413716 MAST4O15021 2626 aa8.8□□□□□ -1
CCDC88A-204ENST00000413716 SPINK7P58062 85 aa8.8□□□□□ -1
CCDC88A-204ENST00000413716 CDSNQ15517 529 aa8.8□□□□□ -1
CCDC88A-204ENST00000413716 ATRQ13535 2644 aa8.8□□□□□ -1
CCDC88A-204ENST00000413716 CFAP46Q8IYW2 2715 aa8.79□□□□□ -1
CCDC88A-204ENST00000413716 TLX1NBP0CAT3 122 aa8.78□□□□□ -1
CCDC88A-204ENST00000413716 Q8N377 158 aa8.78□□□□□ -1
CCDC88A-204ENST00000413716 Q8NAQ8 132 aa8.77□□□□□ -1.01
CCDC88A-204ENST00000413716 C9orf163Q8N9P6 203 aa8.76□□□□□ -1.01
CCDC88A-204ENST00000413716 KRTAP10-9P60411 292 aa8.75□□□□□ -1.01
CCDC88A-204ENST00000413716 FLNAP21333 2647 aaKnown RBP8.73□□□□□ -1.01
CCDC88A-204ENST00000413716 CSAG1Q6PB30 78 aa8.73□□□□□ -1.01
CCDC88A-204ENST00000413716 M0R2T5 61 aa8.73□□□□□ -1.01
CCDC88A-204ENST00000413716 COL4A2P08572 1712 aa8.72□□□□□ -1.01
CCDC88A-204ENST00000413716 FLNBO75369 2602 aaKnown RBP8.72□□□□□ -1.01
CCDC88A-204ENST00000413716 Q6ZSA8 131 aa8.71□□□□□ -1.02
CCDC88A-204ENST00000413716 MGAM2Q2M2H8 2515 aa8.7□□□□□ -1.02
CCDC88A-204ENST00000413716 PRR26Q8N8Z3 221 aa8.7□□□□□ -1.02
CCDC88A-204ENST00000413716 WWC2-AS2Q96NR7 200 aa8.7□□□□□ -1.02
CCDC88A-204ENST00000413716 C5orf42Q9H799 3197 aa8.67□□□□□ -1.02
CCDC88A-204ENST00000413716 CEP350Q5VT06 3117 aa8.67□□□□□ -1.02
CCDC88A-204ENST00000413716 S4R3F8 94 aa8.67□□□□□ -1.02
CCDC88A-204ENST00000413716 IGLV7-43P04211 117 aa8.67□□□□□ -1.02
CCDC88A-204ENST00000413716 NBEAL1Q6ZS30 2694 aa8.67□□□□□ -1.02
CCDC88A-204ENST00000413716 A0A0G2JQZ4 141 aa8.66□□□□□ -1.02
CCDC88A-204ENST00000413716 A0A1W2PNN7 141 aa8.66□□□□□ -1.02
CCDC88A-204ENST00000413716 PSORS1C2Q9UIG4 136 aa8.66□□□□□ -1.02
CCDC88A-204ENST00000413716 IGLV7-46A0A075B6I9 117 aa8.66□□□□□ -1.02
CCDC88A-204ENST00000413716 SPRR4Q96PI1 79 aa8.65□□□□□ -1.02
CCDC88A-204ENST00000413716 PRAC1Q96KF2 57 aa8.65□□□□□ -1.03
CCDC88A-204ENST00000413716 DMBT1Q9UGM3 2413 aaPredicted RBP8.64□□□□□ -1.03
CCDC88A-204ENST00000413716 UTRNP46939 3433 aa8.64□□□□□ -1.03
CCDC88A-204ENST00000413716 ANAPC11Q9NYG5 84 aa8.64□□□□□ -1.03
CCDC88A-204ENST00000413716 OCR1Q9BZK8 76 aa8.63□□□□□ -1.03
CCDC88A-204ENST00000413716 ITPR3Q14573 2671 aa8.63□□□□□ -1.03
CCDC88A-204ENST00000413716 LINC01558Q9Y6Z2 57 aa8.63□□□□□ -1.03
CCDC88A-204ENST00000413716 STAB1Q9NY15 2570 aa8.63□□□□□ -1.03
CCDC88A-204ENST00000413716 KRTAP16-1A8MUX0 517 aa8.62□□□□□ -1.03
CCDC88A-204ENST00000413716 H1FX-AS1Q4G0G2 97 aa8.61□□□□□ -1.03
CCDC88A-204ENST00000413716 HELZ2Q9BYK8 2649 aaKnown RBP8.6□□□□□ -1.03
CCDC88A-204ENST00000413716 PCNTO95613 3336 aa8.59□□□□□ -1.03
CCDC88A-204ENST00000413716 ROMO1P60602 79 aa8.59□□□□□ -1.03
CCDC88A-204ENST00000413716 Q8N9P0 234 aaPredicted RBP8.58□□□□□ -1.04
CCDC88A-204ENST00000413716 SMR3BP02814 79 aaPredicted RBP8.57□□□□□ -1.04
CCDC88A-204ENST00000413716 PRR34Q9NV39 138 aa8.57□□□□□ -1.04
CCDC88A-204ENST00000413716 A0A1W2PPR1 153 aa8.57□□□□□ -1.04
CCDC88A-204ENST00000413716 R4GN34 69 aa8.56□□□□□ -1.04
CCDC88A-204ENST00000413716 A0A087WTM6 91 aa8.56□□□□□ -1.04
CCDC88A-204ENST00000413716 PLAC4Q8WY50 150 aa8.55□□□□□ -1.04
CCDC88A-204ENST00000413716 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.54□□□□□ -1.04
CCDC88A-204ENST00000413716 CHD6Q8TD26 2715 aa8.54□□□□□ -1.04
CCDC88A-204ENST00000413716 TEX15Q9BXT5 2789 aa8.53□□□□□ -1.04
CCDC88A-204ENST00000413716 FAM229BQ4G0N7 80 aa8.53□□□□□ -1.04
CCDC88A-204ENST00000413716 A0A1W2PNM2 257 aa8.52□□□□□ -1.04
CCDC88A-204ENST00000413716 MAP1AP78559 2803 aaPredicted RBP8.52□□□□□ -1.05
CCDC88A-204ENST00000413716 C19orf73Q9NVV2 129 aa8.5□□□□□ -1.05
CCDC88A-204ENST00000413716 CNBPP62633 177 aaKnown RBP8.5□□□□□ -1.05
CCDC88A-204ENST00000413716 EIF4EBP3O60516 100 aaPredicted RBP8.49□□□□□ -1.05
CCDC88A-204ENST00000413716 Q5VV11 94 aa8.49□□□□□ -1.05
CCDC88A-204ENST00000413716 TNP2Q05952 138 aa8.47□□□□□ -1.05
CCDC88A-204ENST00000413716 COL6A5A8TX70 2615 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms