RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 RBM3P98179 157 aaKnown RBP8.85□□□□□ -0.99
LIMS1-205ENST00000410093 UBE2DNLQ8IWF7 75 aa8.85□□□□□ -0.99
LIMS1-205ENST00000410093 LCE6AA0A183 80 aa8.83□□□□□ -1
LIMS1-205ENST00000410093 PRYO14603 147 aa8.83□□□□□ -1
LIMS1-205ENST00000410093 Q6ZQY7 126 aa8.83□□□□□ -1
LIMS1-205ENST00000410093 LINC00528Q8N1L1 170 aa8.83□□□□□ -1
LIMS1-205ENST00000410093 CNBPP62633 177 aaKnown RBP8.82□□□□□ -1
LIMS1-205ENST00000410093 ATP5EP2Q5VTU8 51 aa8.82□□□□□ -1
LIMS1-205ENST00000410093 LAMTOR3Q9UHA4 124 aa8.82□□□□□ -1
LIMS1-205ENST00000410093 NDUFV3P56181 108 aaKnown RBP8.81□□□□□ -1
LIMS1-205ENST00000410093 Q6JHZ5 121 aa8.81□□□□□ -1
LIMS1-205ENST00000410093 SMCR5Q8TEV8 140 aa8.81□□□□□ -1
LIMS1-205ENST00000410093 DSCR8Q96T75 97 aa8.81□□□□□ -1
LIMS1-205ENST00000410093 ANAPC13Q9BS18 74 aa8.8□□□□□ -1
LIMS1-205ENST00000410093 DHRS4-AS1Q9P1J3 65 aa8.8□□□□□ -1
LIMS1-205ENST00000410093 C7orf33Q8WU49 177 aa8.8□□□□□ -1
LIMS1-205ENST00000410093 PSCAO43653 123 aa8.79□□□□□ -1
LIMS1-205ENST00000410093 RYR3Q15413 4870 aa8.78□□□□□ -1
LIMS1-205ENST00000410093 SERTAD4-AS1Q5TG53 156 aa8.78□□□□□ -1
LIMS1-205ENST00000410093 Q6ZQT0 140 aa8.78□□□□□ -1
LIMS1-205ENST00000410093 LINC00846Q9NV44 126 aa8.78□□□□□ -1
LIMS1-205ENST00000410093 STARD9Q9P2P6 4700 aa8.78□□□□□ -1
LIMS1-205ENST00000410093 IGLV1-50A0A075B6I6 118 aa8.77□□□□□ -1.01
LIMS1-205ENST00000410093 SPRR1AP35321 89 aa8.77□□□□□ -1.01
LIMS1-205ENST00000410093 UBL5Q9BZL1 73 aa8.77□□□□□ -1.01
LIMS1-205ENST00000410093 CSMD3Q7Z407 3707 aa8.77□□□□□ -1.01
LIMS1-205ENST00000410093 DYNC2H1Q8NCM8 4307 aaKnown RBP8.76□□□□□ -1.01
LIMS1-205ENST00000410093 DNAH1Q9P2D7 4330 aa8.76□□□□□ -1.01
LIMS1-205ENST00000410093 TENM2Q9NT68 2774 aa8.75□□□□□ -1.01
LIMS1-205ENST00000410093 C16orf90A8MZG2 172 aa8.75□□□□□ -1.01
LIMS1-205ENST00000410093 MRPL55Q7Z7F7 128 aaKnown RBP8.75□□□□□ -1.01
LIMS1-205ENST00000410093 Q6ZRX8 168 aa8.75□□□□□ -1.01
LIMS1-205ENST00000410093 TRBV7-4A0A0J9YYF1 115 aa8.74□□□□□ -1.01
LIMS1-205ENST00000410093 ETDCA0A1B0GVM5 59 aa8.74□□□□□ -1.01
LIMS1-205ENST00000410093 LYSTQ99698 3801 aa8.74□□□□□ -1.01
LIMS1-205ENST00000410093 A0A1B0GW54 56 aa8.73□□□□□ -1.01
LIMS1-205ENST00000410093 KRTAP4-16G5E9R7 235 aaPredicted RBP8.73□□□□□ -1.01
LIMS1-205ENST00000410093 LY6G6CO95867 125 aa8.73□□□□□ -1.01
LIMS1-205ENST00000410093 SACSQ9NZJ4 4579 aa8.73□□□□□ -1.01
LIMS1-205ENST00000410093 NBDYA0A0U1RRE5 68 aa8.72□□□□□ -1.01
LIMS1-205ENST00000410093 B5MCH6 92 aa8.72□□□□□ -1.01
LIMS1-205ENST00000410093 KRTAP1-5Q9BYS1 174 aa8.72□□□□□ -1.01
LIMS1-205ENST00000410093 LINC00476Q8WZB0 136 aa8.7□□□□□ -1.02
LIMS1-205ENST00000410093 LINC00474Q9P2X8 69 aa8.7□□□□□ -1.02
LIMS1-205ENST00000410093 RYR2Q92736 4967 aa8.7□□□□□ -1.02
LIMS1-205ENST00000410093 FAM236AA0A1B0GUQ0 79 aa8.69□□□□□ -1.02
LIMS1-205ENST00000410093 FAM236BA0A1B0GV22 79 aa8.69□□□□□ -1.02
LIMS1-205ENST00000410093 REG3GQ6UW15 175 aa8.69□□□□□ -1.02
LIMS1-205ENST00000410093 FAM168BA1KXE4 195 aa8.68□□□□□ -1.02
LIMS1-205ENST00000410093 ATOX1O00244 68 aa8.68□□□□□ -1.02
LIMS1-205ENST00000410093 LCE2BO14633 110 aa8.68□□□□□ -1.02
LIMS1-205ENST00000410093 HIST1H4AP62805 103 aaKnown RBP8.68□□□□□ -1.02
LIMS1-205ENST00000410093 FAM19A5Q7Z5A7 132 aaPredicted RBP8.68□□□□□ -1.02
LIMS1-205ENST00000410093 IGLV5-48A0A075B6I7 105 aa8.67□□□□□ -1.02
LIMS1-205ENST00000410093 KRTAP7-1Q8IUC3 87 aa8.67□□□□□ -1.02
LIMS1-205ENST00000410093 ALMS1Q8TCU4 4167 aa8.66□□□□□ -1.02
LIMS1-205ENST00000410093 RPL37AP8A6NKH3 93 aa8.66□□□□□ -1.02
LIMS1-205ENST00000410093 C9orf163Q8N9P6 203 aa8.66□□□□□ -1.02
LIMS1-205ENST00000410093 A0A096LNI7 61 aa8.65□□□□□ -1.02
LIMS1-205ENST00000410093 CXCL6P80162 114 aa8.65□□□□□ -1.02
LIMS1-205ENST00000410093 IGKV3D-7A0A0C4DH55 119 aa8.64□□□□□ -1.03
LIMS1-205ENST00000410093 LRCOL1A6NCL2 159 aa8.64□□□□□ -1.03
LIMS1-205ENST00000410093 PLECQ15149 4684 aaKnown RBP8.64□□□□□ -1.03
LIMS1-205ENST00000410093 Q8N377 158 aa8.64□□□□□ -1.03
LIMS1-205ENST00000410093 Q9BRP9 147 aa8.64□□□□□ -1.03
LIMS1-205ENST00000410093 H0Y9J4 135 aa8.63□□□□□ -1.03
LIMS1-205ENST00000410093 BCE1O60756 84 aa8.63□□□□□ -1.03
LIMS1-205ENST00000410093 LINC01547P58512 204 aaPredicted RBP8.62□□□□□ -1.03
LIMS1-205ENST00000410093 Q6ZRN7 208 aaPredicted RBP8.62□□□□□ -1.03
LIMS1-205ENST00000410093 Q6ZVQ6 151 aa8.62□□□□□ -1.03
LIMS1-205ENST00000410093 HYDINQ4G0P3 5121 aa8.62□□□□□ -1.03
LIMS1-205ENST00000410093 UBE2BP63146 152 aa8.61□□□□□ -1.03
LIMS1-205ENST00000410093 UQCRQO14949 82 aa8.59□□□□□ -1.03
LIMS1-205ENST00000410093 FUSP35637 526 aaKnown RBP eCLIP8.59□□□□□ -1.03
LIMS1-205ENST00000410093 IGKV2-24A0A0C4DH68 120 aa8.59□□□□□ -1.03
LIMS1-205ENST00000410093 DEFB105AQ8NG35 78 aa8.59□□□□□ -1.03
LIMS1-205ENST00000410093 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.58□□□□□ -1.04
LIMS1-205ENST00000410093 A0A1W2PNN7 141 aa8.58□□□□□ -1.04
LIMS1-205ENST00000410093 TNP2Q05952 138 aa8.58□□□□□ -1.04
LIMS1-205ENST00000410093 C3orf22Q8N5N4 141 aa8.57□□□□□ -1.04
LIMS1-205ENST00000410093 COX7CP15954 63 aa8.56□□□□□ -1.04
LIMS1-205ENST00000410093 HAMPP81172 84 aa8.56□□□□□ -1.04
LIMS1-205ENST00000410093 SMIM20Q8N5G0 67 aa8.56□□□□□ -1.04
LIMS1-205ENST00000410093 EPM2AB3EWF7 344 aa8.55□□□□□ -1.04
LIMS1-205ENST00000410093 F8WEM9 126 aa8.55□□□□□ -1.04
LIMS1-205ENST00000410093 FAM19A1Q7Z5A9 133 aa8.55□□□□□ -1.04
LIMS1-205ENST00000410093 SVIPQ8NHG7 77 aa8.55□□□□□ -1.04
LIMS1-205ENST00000410093 CCDC179H3BU77 68 aa8.54□□□□□ -1.04
LIMS1-205ENST00000410093 M0R2N4 97 aa8.54□□□□□ -1.04
LIMS1-205ENST00000410093 KMT2AQ03164 3969 aa8.54□□□□□ -1.04
LIMS1-205ENST00000410093 NREPQ16612 68 aa8.54□□□□□ -1.04
LIMS1-205ENST00000410093 C1orf137Q5JT78 98 aa8.54□□□□□ -1.04
LIMS1-205ENST00000410093 Q6ZR54 194 aa8.54□□□□□ -1.04
LIMS1-205ENST00000410093 SERP2Q8N6R1 65 aa8.54□□□□□ -1.04
LIMS1-205ENST00000410093 A0A087WTM6 91 aa8.53□□□□□ -1.04
LIMS1-205ENST00000410093 Q8NBF4 154 aa8.53□□□□□ -1.04
LIMS1-205ENST00000410093 SPRR4Q96PI1 79 aa8.53□□□□□ -1.04
LIMS1-205ENST00000410093 IGLV8-61A0A075B6I0 122 aa8.52□□□□□ -1.05
LIMS1-205ENST00000410093 A0A087WVE0 104 aa8.51□□□□□ -1.05
LIMS1-205ENST00000410093 ERC2-IT1O76042 136 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms