RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 SMCR5Q8TEV8 140 aa4.92□□□□□ -1.62
SCN9A-202ENST00000409435 SETD2Q9BYW2 2564 aaPredicted RBP4.92□□□□□ -1.62
SCN9A-202ENST00000409435 Q5VSD8 79 aa4.92□□□□□ -1.62
SCN9A-202ENST00000409435 MGAM2Q2M2H8 2515 aa4.91□□□□□ -1.62
SCN9A-202ENST00000409435 SETXQ7Z333 2677 aaKnown RBP4.91□□□□□ -1.62
SCN9A-202ENST00000409435 WDR87Q6ZQQ6 2873 aa4.91□□□□□ -1.62
SCN9A-202ENST00000409435 C9orf129Q5T035 196 aaKnown RBP4.9□□□□□ -1.62
SCN9A-202ENST00000409435 H7BZZ5 65 aa4.9□□□□□ -1.63
SCN9A-202ENST00000409435 Q8NBF4 154 aa4.9□□□□□ -1.63
SCN9A-202ENST00000409435 USP24Q9UPU5 2620 aa4.9□□□□□ -1.63
SCN9A-202ENST00000409435 A8MTW9 85 aa4.89□□□□□ -1.63
SCN9A-202ENST00000409435 PLA2G2DQ9UNK4 145 aa4.89□□□□□ -1.63
SCN9A-202ENST00000409435 PLXNB1O43157 2135 aa4.89□□□□□ -1.63
SCN9A-202ENST00000409435 Q1T7F1 81 aa4.88□□□□□ -1.63
SCN9A-202ENST00000409435 PSORS1C2Q9UIG4 136 aa4.87□□□□□ -1.63
SCN9A-202ENST00000409435 A8MWP4 228 aa4.87□□□□□ -1.63
SCN9A-202ENST00000409435 FAM218AQ96MZ4 157 aa4.87□□□□□ -1.63
SCN9A-202ENST00000409435 CFAP46Q8IYW2 2715 aa4.87□□□□□ -1.63
SCN9A-202ENST00000409435 LINC00167Q96N53 147 aa4.87□□□□□ -1.63
SCN9A-202ENST00000409435 SRCAPQ6ZRS2 3230 aa4.86□□□□□ -1.63
SCN9A-202ENST00000409435 TRBV7-4A0A0J9YYF1 115 aa4.86□□□□□ -1.63
SCN9A-202ENST00000409435 CEP350Q5VT06 3117 aa4.86□□□□□ -1.63
SCN9A-202ENST00000409435 GVQW2A0A096LPI5 108 aaPredicted RBP4.86□□□□□ -1.63
SCN9A-202ENST00000409435 IGLV5-39A0A0G2JS06 123 aa4.86□□□□□ -1.63
SCN9A-202ENST00000409435 LINC00313P59037 77 aa4.85□□□□□ -1.63
SCN9A-202ENST00000409435 AGRNO00468 2067 aa4.85□□□□□ -1.63
SCN9A-202ENST00000409435 LINC01546A6NGU7 62 aa4.85□□□□□ -1.63
SCN9A-202ENST00000409435 DMAC1Q96GE9 116 aa4.85□□□□□ -1.63
SCN9A-202ENST00000409435 COX8CQ7Z4L0 72 aa4.85□□□□□ -1.63
SCN9A-202ENST00000409435 SPANXA2-OT1Q8N9U9 137 aa4.84□□□□□ -1.64
SCN9A-202ENST00000409435 C9orf163Q8N9P6 203 aa4.83□□□□□ -1.64
SCN9A-202ENST00000409435 MRPL34Q9BQ48 92 aaKnown RBP4.83□□□□□ -1.64
SCN9A-202ENST00000409435 C8orf17Q9NRJ1 99 aa4.83□□□□□ -1.64
SCN9A-202ENST00000409435 OXTP01178 125 aa4.82□□□□□ -1.64
SCN9A-202ENST00000409435 CENPFP49454 3210 aa4.82□□□□□ -1.64
SCN9A-202ENST00000409435 ITPR3Q14573 2671 aa4.82□□□□□ -1.64
SCN9A-202ENST00000409435 MAST4O15021 2626 aa4.81□□□□□ -1.64
SCN9A-202ENST00000409435 ZNF861PO60384 105 aa4.81□□□□□ -1.64
SCN9A-202ENST00000409435 IGLV7-43P04211 117 aa4.81□□□□□ -1.64
SCN9A-202ENST00000409435 IGLV1-50A0A075B6I6 118 aa4.81□□□□□ -1.64
SCN9A-202ENST00000409435 LINC00483Q53H64 154 aa4.81□□□□□ -1.64
SCN9A-202ENST00000409435 IGLV7-46A0A075B6I9 117 aa4.81□□□□□ -1.64
SCN9A-202ENST00000409435 K7EQZ3 153 aa4.81□□□□□ -1.64
SCN9A-202ENST00000409435 Q96NJ1 140 aa4.81□□□□□ -1.64
SCN9A-202ENST00000409435 CAMK2N1Q7Z7J9 78 aa4.81□□□□□ -1.64
SCN9A-202ENST00000409435 KRTAP16-1A8MUX0 517 aa4.8□□□□□ -1.64
SCN9A-202ENST00000409435 Q6ZSA8 131 aa4.79□□□□□ -1.64
SCN9A-202ENST00000409435 Q75L30 129 aa4.79□□□□□ -1.64
SCN9A-202ENST00000409435 FLNAP21333 2647 aaKnown RBP4.79□□□□□ -1.64
SCN9A-202ENST00000409435 GOLGB1Q14789 3259 aaKnown RBP4.79□□□□□ -1.64
SCN9A-202ENST00000409435 C9orf92A6NGG3 77 aa4.78□□□□□ -1.64
SCN9A-202ENST00000409435 KLK9Q2XQG4 91 aa4.78□□□□□ -1.64
SCN9A-202ENST00000409435 Q6ZRX8 168 aa4.78□□□□□ -1.64
SCN9A-202ENST00000409435 IGLV5-45A0A087WSX0 123 aa4.77□□□□□ -1.65
SCN9A-202ENST00000409435 CR1P17927 2039 aa4.76□□□□□ -1.65
SCN9A-202ENST00000409435 FAM104AQ969W3 186 aa4.76□□□□□ -1.65
SCN9A-202ENST00000409435 PRAC1Q96KF2 57 aa4.76□□□□□ -1.65
SCN9A-202ENST00000409435 TEP1Q99973 2627 aaKnown RBP4.76□□□□□ -1.65
SCN9A-202ENST00000409435 IGHV3OR16-9A0A0B4J2B5 98 aa4.75□□□□□ -1.65
SCN9A-202ENST00000409435 GIG44P09565 113 aaPredicted RBP4.75□□□□□ -1.65
SCN9A-202ENST00000409435 SEC61BP60468 96 aaKnown RBP4.74□□□□□ -1.65
SCN9A-202ENST00000409435 Q5XG85 94 aa4.74□□□□□ -1.65
SCN9A-202ENST00000409435 ATRQ13535 2644 aa4.74□□□□□ -1.65
SCN9A-202ENST00000409435 CNBPP62633 177 aaKnown RBP4.74□□□□□ -1.65
SCN9A-202ENST00000409435 GCN1Q92616 2671 aaKnown RBP4.74□□□□□ -1.65
SCN9A-202ENST00000409435 A0A0D9SG42 100 aa4.73□□□□□ -1.65
SCN9A-202ENST00000409435 IGLV6-57P01721 117 aa4.73□□□□□ -1.65
SCN9A-202ENST00000409435 CSAG1Q6PB30 78 aa4.73□□□□□ -1.65
SCN9A-202ENST00000409435 LINC00612Q8N6U2 182 aa4.73□□□□□ -1.65
SCN9A-202ENST00000409435 FAM168BA1KXE4 195 aa4.72□□□□□ -1.65
SCN9A-202ENST00000409435 PRR26Q8N8Z3 221 aa4.72□□□□□ -1.65
SCN9A-202ENST00000409435 IGLV5-37A0A075B6J1 123 aa4.72□□□□□ -1.65
SCN9A-202ENST00000409435 ST20-AS1Q8NBB2 130 aa4.72□□□□□ -1.65
SCN9A-202ENST00000409435 MUC4Q99102 2169 aa4.71□□□□□ -1.66
SCN9A-202ENST00000409435 TLX1NBP0CAT3 122 aa4.71□□□□□ -1.66
SCN9A-202ENST00000409435 UTRNP46939 3433 aa4.7□□□□□ -1.66
SCN9A-202ENST00000409435 A0A1B0GVX0 72 aa4.69□□□□□ -1.66
SCN9A-202ENST00000409435 LITAFQ99732 161 aa4.69□□□□□ -1.66
SCN9A-202ENST00000409435 IGLV5-48A0A075B6I7 105 aa4.69□□□□□ -1.66
SCN9A-202ENST00000409435 C15orf56Q8N910 161 aa4.68□□□□□ -1.66
SCN9A-202ENST00000409435 LINC01558Q9Y6Z2 57 aa4.68□□□□□ -1.66
SCN9A-202ENST00000409435 SPINK7P58062 85 aa4.68□□□□□ -1.66
SCN9A-202ENST00000409435 PRR34Q9NV39 138 aa4.68□□□□□ -1.66
SCN9A-202ENST00000409435 Q8N1X5 172 aa4.67□□□□□ -1.66
SCN9A-202ENST00000409435 KRTAP10-1P60331 282 aa4.66□□□□□ -1.66
SCN9A-202ENST00000409435 A0A1B0GU33 70 aa4.66□□□□□ -1.66
SCN9A-202ENST00000409435 ASB16-AS1Q495Z4 193 aa4.66□□□□□ -1.66
SCN9A-202ENST00000409435 OBSCN-AS1Q96MR7 158 aa4.66□□□□□ -1.66
SCN9A-202ENST00000409435 EIF4EBP3O60516 100 aaPredicted RBP4.65□□□□□ -1.66
SCN9A-202ENST00000409435 A0A1W2PNN7 141 aa4.65□□□□□ -1.67
SCN9A-202ENST00000409435 DSCR10P59022 87 aa4.65□□□□□ -1.67
SCN9A-202ENST00000409435 IGFL1Q6UW32 110 aa4.65□□□□□ -1.67
SCN9A-202ENST00000409435 FP248Q71RG6 208 aaPredicted RBP4.65□□□□□ -1.67
SCN9A-202ENST00000409435 ANAPC11Q9NYG5 84 aa4.65□□□□□ -1.67
SCN9A-202ENST00000409435 KRTAP10-2P60368 255 aa4.65□□□□□ -1.67
SCN9A-202ENST00000409435 Q8N9P0 234 aaPredicted RBP4.65□□□□□ -1.67
SCN9A-202ENST00000409435 ZNF292O60281 2723 aa4.64□□□□□ -1.67
SCN9A-202ENST00000409435 UNC79Q9P2D8 2635 aa4.64□□□□□ -1.67
SCN9A-202ENST00000409435 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.64□□□□□ -1.67
SCN9A-202ENST00000409435 Q5VV11 94 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms