RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 LINC00528Q8N1L1 170 aa9.69□□□□□ -0.86
GPC3-202ENST00000394299 JMJD7-PLA2G4BH0Y9G9 81 aa9.68□□□□□ -0.86
GPC3-202ENST00000394299 CCKP06307 115 aa9.67□□□□□ -0.86
GPC3-202ENST00000394299 KCNQ1DNQ9H478 68 aa9.67□□□□□ -0.86
GPC3-202ENST00000394299 M0R2N4 97 aa9.67□□□□□ -0.86
GPC3-202ENST00000394299 IGKV2-24A0A0C4DH68 120 aa9.66□□□□□ -0.86
GPC3-202ENST00000394299 VPS13DQ5THJ4 4388 aa9.66□□□□□ -0.86
GPC3-202ENST00000394299 TRBV7-6A0A0J9YX20 115 aa9.66□□□□□ -0.86
GPC3-202ENST00000394299 LOC107984640A0A0U1RRK4 108 aa9.66□□□□□ -0.86
GPC3-202ENST00000394299 LINC00643Q86TS7 51 aa9.66□□□□□ -0.86
GPC3-202ENST00000394299 A0A096LNI7 61 aa9.65□□□□□ -0.87
GPC3-202ENST00000394299 RBM3P98179 157 aaKnown RBP9.65□□□□□ -0.87
GPC3-202ENST00000394299 PLA2G2DQ9UNK4 145 aa9.65□□□□□ -0.87
GPC3-202ENST00000394299 IGLV1-50A0A075B6I6 118 aa9.64□□□□□ -0.87
GPC3-202ENST00000394299 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.64□□□□□ -0.87
GPC3-202ENST00000394299 KMT2AQ03164 3969 aa9.64□□□□□ -0.87
GPC3-202ENST00000394299 TRBV7-7A0A0K0K1E9 115 aa9.64□□□□□ -0.87
GPC3-202ENST00000394299 NUPR2A6NF83 97 aa9.64□□□□□ -0.87
GPC3-202ENST00000394299 NBDYA0A0U1RRE5 68 aa9.63□□□□□ -0.87
GPC3-202ENST00000394299 IGKV3D-7A0A0C4DH55 119 aa9.62□□□□□ -0.87
GPC3-202ENST00000394299 MRPL55Q7Z7F7 128 aaKnown RBP9.62□□□□□ -0.87
GPC3-202ENST00000394299 DEFB105AQ8NG35 78 aa9.62□□□□□ -0.87
GPC3-202ENST00000394299 IGLV5-37A0A075B6J1 123 aa9.61□□□□□ -0.87
GPC3-202ENST00000394299 A0A1W2PNN7 141 aa9.61□□□□□ -0.87
GPC3-202ENST00000394299 Q6ZQT0 140 aa9.61□□□□□ -0.87
GPC3-202ENST00000394299 CHTF8P0CG12 524 aa9.61□□□□□ -0.87
GPC3-202ENST00000394299 Q9BRP9 147 aa9.6□□□□□ -0.87
GPC3-202ENST00000394299 FAM236AA0A1B0GUQ0 79 aa9.6□□□□□ -0.87
GPC3-202ENST00000394299 FAM236BA0A1B0GV22 79 aa9.6□□□□□ -0.87
GPC3-202ENST00000394299 KRTAP4-16G5E9R7 235 aaPredicted RBP9.6□□□□□ -0.87
GPC3-202ENST00000394299 CNBPP62633 177 aaKnown RBP9.6□□□□□ -0.87
GPC3-202ENST00000394299 LRCOL1A6NCL2 159 aa9.59□□□□□ -0.87
GPC3-202ENST00000394299 FUSP35637 526 aaKnown RBP eCLIP9.58□□□□□ -0.882e-6■■□□□ 12
GPC3-202ENST00000394299 DSCR8Q96T75 97 aa9.58□□□□□ -0.88
GPC3-202ENST00000394299 C16orf90A8MZG2 172 aa9.57□□□□□ -0.88
GPC3-202ENST00000394299 Q6ZRN7 208 aaPredicted RBP9.57□□□□□ -0.88
GPC3-202ENST00000394299 Q6ZRX8 168 aa9.57□□□□□ -0.88
GPC3-202ENST00000394299 DNAH2Q9P225 4427 aa9.57□□□□□ -0.88
GPC3-202ENST00000394299 ETDCA0A1B0GVM5 59 aa9.57□□□□□ -0.88
GPC3-202ENST00000394299 SPRR1AP35321 89 aa9.57□□□□□ -0.88
GPC3-202ENST00000394299 C3orf22Q8N5N4 141 aa9.57□□□□□ -0.88
GPC3-202ENST00000394299 ST20-AS1Q8NBB2 130 aa9.57□□□□□ -0.88
GPC3-202ENST00000394299 ERC2-IT1O76042 136 aa9.56□□□□□ -0.88
GPC3-202ENST00000394299 LOC110117498A0A087WWA1 95 aa9.56□□□□□ -0.88
GPC3-202ENST00000394299 PRYO14603 147 aa9.56□□□□□ -0.88
GPC3-202ENST00000394299 Q8N377 158 aa9.56□□□□□ -0.88
GPC3-202ENST00000394299 TGP01266 2768 aa9.55□□□□□ -0.88
GPC3-202ENST00000394299 IMUPQ9GZP8 106 aa9.55□□□□□ -0.88
GPC3-202ENST00000394299 FBN3Q75N90 2809 aa9.54□□□□□ -0.88
GPC3-202ENST00000394299 LINC01547P58512 204 aaPredicted RBP9.54□□□□□ -0.88
GPC3-202ENST00000394299 KRTAP11-1Q8IUC1 163 aa9.54□□□□□ -0.88
GPC3-202ENST00000394299 A0A087WVE0 104 aa9.53□□□□□ -0.88
GPC3-202ENST00000394299 C9orf153Q5TBE3 101 aa9.53□□□□□ -0.88
GPC3-202ENST00000394299 TRBV7-4A0A0J9YYF1 115 aa9.53□□□□□ -0.88
GPC3-202ENST00000394299 PANO1I0J062 215 aa9.52□□□□□ -0.88
GPC3-202ENST00000394299 Q6JHZ5 121 aa9.52□□□□□ -0.88
GPC3-202ENST00000394299 REG3GQ6UW15 175 aa9.52□□□□□ -0.88
GPC3-202ENST00000394299 H3BQ85 93 aa9.52□□□□□ -0.89
GPC3-202ENST00000394299 C14orf177Q52M58 125 aa9.52□□□□□ -0.89
GPC3-202ENST00000394299 PHF5AQ7RTV0 110 aaKnown RBP9.52□□□□□ -0.89
GPC3-202ENST00000394299 SRRM2Q9UQ35 2752 aaKnown RBP9.51□□□□□ -0.89
GPC3-202ENST00000394299 UBE2BP63146 152 aa9.51□□□□□ -0.89
GPC3-202ENST00000394299 C9orf163Q8N9P6 203 aa9.51□□□□□ -0.89
GPC3-202ENST00000394299 DHRS4-AS1Q9P1J3 65 aa9.51□□□□□ -0.89
GPC3-202ENST00000394299 UQCRQO14949 82 aa9.5□□□□□ -0.89
GPC3-202ENST00000394299 PRLHP81277 87 aa9.5□□□□□ -0.89
GPC3-202ENST00000394299 GHRHP01286 108 aa9.49□□□□□ -0.89
GPC3-202ENST00000394299 UBL5Q9BZL1 73 aa9.49□□□□□ -0.89
GPC3-202ENST00000394299 HECTD4Q9Y4D8 3996 aa9.48□□□□□ -0.89
GPC3-202ENST00000394299 HIST1H4AP62805 103 aaKnown RBP9.48□□□□□ -0.89
GPC3-202ENST00000394299 FAM19A1Q7Z5A9 133 aa9.47□□□□□ -0.89
GPC3-202ENST00000394299 Q6ZVQ6 151 aa9.46□□□□□ -0.89
GPC3-202ENST00000394299 PDE6GP18545 87 aa9.45□□□□□ -0.9
GPC3-202ENST00000394299 HAMPP81172 84 aa9.45□□□□□ -0.9
GPC3-202ENST00000394299 DPH3Q96FX2 82 aa9.45□□□□□ -0.9
GPC3-202ENST00000394299 COX7CP15954 63 aa9.44□□□□□ -0.9
GPC3-202ENST00000394299 A0A087WTM6 91 aa9.44□□□□□ -0.9
GPC3-202ENST00000394299 CYSTM1Q9H1C7 97 aa9.44□□□□□ -0.9
GPC3-202ENST00000394299 HIGD2AQ9BW72 106 aa9.43□□□□□ -0.9
GPC3-202ENST00000394299 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.43□□□□□ -0.9
GPC3-202ENST00000394299 A0A0G2JQZ4 141 aa9.43□□□□□ -0.9
GPC3-202ENST00000394299 SCXQ7RTU7 201 aa9.43□□□□□ -0.9
GPC3-202ENST00000394299 IGLV5-48A0A075B6I7 105 aa9.42□□□□□ -0.9
GPC3-202ENST00000394299 Q6ZR54 194 aa9.42□□□□□ -0.9
GPC3-202ENST00000394299 DNAH17Q9UFH2 4485 aa9.42□□□□□ -0.9
GPC3-202ENST00000394299 C3orf84H3BNL1 204 aa9.42□□□□□ -0.9
GPC3-202ENST00000394299 J3KT08 172 aa9.42□□□□□ -0.9
GPC3-202ENST00000394299 C5orf47Q569G3 176 aa9.42□□□□□ -0.9
GPC3-202ENST00000394299 CRYGAP11844 174 aa9.41□□□□□ -0.9
GPC3-202ENST00000394299 LY6G6CO95867 125 aa9.4□□□□□ -0.9
GPC3-202ENST00000394299 SMIM29Q86T20 159 aa9.4□□□□□ -0.9
GPC3-202ENST00000394299 TNP2Q05952 138 aa9.39□□□□□ -0.91
GPC3-202ENST00000394299 HYDINQ4G0P3 5121 aa9.38□□□□□ -0.91
GPC3-202ENST00000394299 A0A1W2PNM2 257 aa9.38□□□□□ -0.91
GPC3-202ENST00000394299 EPM2AB3EWF7 344 aa9.37□□□□□ -0.91
GPC3-202ENST00000394299 RPS28P62857 69 aaKnown RBP9.37□□□□□ -0.91
GPC3-202ENST00000394299 C1orf137Q5JT78 98 aa9.37□□□□□ -0.91
GPC3-202ENST00000394299 ATP5EP2Q5VTU8 51 aa9.37□□□□□ -0.91
GPC3-202ENST00000394299 ATOX1O00244 68 aa9.36□□□□□ -0.91
GPC3-202ENST00000394299 DNAH8Q96JB1 4490 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms