RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 LELP1Q5T871 98 aa11.8□□□□□ -0.52
SQSTM1-202ENST00000389805 NBEAL1Q6ZS30 2694 aa11.8□□□□□ -0.52
SQSTM1-202ENST00000389805 NDUFC1O43677 76 aa11.79□□□□□ -0.52
SQSTM1-202ENST00000389805 PDE6GP18545 87 aa11.79□□□□□ -0.52
SQSTM1-202ENST00000389805 DIRC1Q969H9 104 aa11.79□□□□□ -0.52
SQSTM1-202ENST00000389805 ZNF73O43830 326 aaPredicted RBP11.75□□□□□ -0.53
SQSTM1-202ENST00000389805 COX7BP24311 80 aa11.75□□□□□ -0.53
SQSTM1-202ENST00000389805 C3orf84H3BNL1 204 aa11.74□□□□□ -0.53
SQSTM1-202ENST00000389805 HIGD2AQ9BW72 106 aa11.74□□□□□ -0.53
SQSTM1-202ENST00000389805 Q6ZTC4 211 aa11.73□□□□□ -0.53
SQSTM1-202ENST00000389805 WFDC10BQ8IUB3 73 aa11.73□□□□□ -0.53
SQSTM1-202ENST00000389805 PRR34Q9NV39 138 aa11.73□□□□□ -0.53
SQSTM1-202ENST00000389805 LRCOL1A6NCL2 159 aa11.73□□□□□ -0.53
SQSTM1-202ENST00000389805 PRYO14603 147 aa11.72□□□□□ -0.53
SQSTM1-202ENST00000389805 COL6A5A8TX70 2615 aa11.72□□□□□ -0.53
SQSTM1-202ENST00000389805 KRTAP24-1Q3LI83 254 aa11.72□□□□□ -0.53
SQSTM1-202ENST00000389805 IGKV4-1P06312 121 aa11.71□□□□□ -0.53
SQSTM1-202ENST00000389805 ATP5EP56381 51 aaPredicted RBP11.71□□□□□ -0.53
SQSTM1-202ENST00000389805 KPRPQ5T749 579 aaPredicted RBP11.71□□□□□ -0.53
SQSTM1-202ENST00000389805 FUSP35637 526 aaKnown RBP eCLIP11.71□□□□□ -0.544e-7■■■□□ 15.3
SQSTM1-202ENST00000389805 C1orf195Q5TG92 126 aa11.7□□□□□ -0.54
SQSTM1-202ENST00000389805 C6orf48Q9UBA6 75 aa11.7□□□□□ -0.54
SQSTM1-202ENST00000389805 CMYA5Q8N3K9 4069 aa11.7□□□□□ -0.54
SQSTM1-202ENST00000389805 A0A0J9YWU9 116 aa11.68□□□□□ -0.54
SQSTM1-202ENST00000389805 OCR1Q9BZK8 76 aa11.68□□□□□ -0.54
SQSTM1-202ENST00000389805 ELOF1P60002 83 aaKnown RBP11.67□□□□□ -0.54
SQSTM1-202ENST00000389805 ESRGQ1W209 222 aa11.67□□□□□ -0.54
SQSTM1-202ENST00000389805 HIGD2BQ4VC39 106 aa11.67□□□□□ -0.54
SQSTM1-202ENST00000389805 DEFB105AQ8NG35 78 aa11.67□□□□□ -0.54
SQSTM1-202ENST00000389805 FAM30AQ9NZY2 134 aa11.67□□□□□ -0.54
SQSTM1-202ENST00000389805 H3BQ85 93 aa11.64□□□□□ -0.55
SQSTM1-202ENST00000389805 PRB2P02812 416 aaPredicted RBP11.63□□□□□ -0.55
SQSTM1-202ENST00000389805 ERC2-IT1O76042 136 aa11.62□□□□□ -0.55
SQSTM1-202ENST00000389805 V9GYY9 64 aa11.61□□□□□ -0.55
SQSTM1-202ENST00000389805 SMIM29Q86T20 159 aa11.61□□□□□ -0.55
SQSTM1-202ENST00000389805 EGFEM1PQ0D2K5 195 aa11.6□□□□□ -0.55
SQSTM1-202ENST00000389805 F8WDY8 70 aa11.59□□□□□ -0.55
SQSTM1-202ENST00000389805 VPREB1P12018 145 aa11.59□□□□□ -0.55
SQSTM1-202ENST00000389805 KRTAP26-1Q6PEX3 210 aa11.59□□□□□ -0.55
SQSTM1-202ENST00000389805 LINC00528Q8N1L1 170 aa11.58□□□□□ -0.56
SQSTM1-202ENST00000389805 DEFB131BA0A096LNP1 70 aa11.58□□□□□ -0.56
SQSTM1-202ENST00000389805 CAMK2N2Q96S95 79 aa11.58□□□□□ -0.56
SQSTM1-202ENST00000389805 PRR4Q16378 134 aa11.57□□□□□ -0.56
SQSTM1-202ENST00000389805 H3BNG1 76 aa11.56□□□□□ -0.56
SQSTM1-202ENST00000389805 C11orf45Q8TAV5 145 aa11.56□□□□□ -0.56
SQSTM1-202ENST00000389805 MGAM2Q2M2H8 2515 aa11.56□□□□□ -0.56
SQSTM1-202ENST00000389805 Q6ZRU5 148 aa11.55□□□□□ -0.56
SQSTM1-202ENST00000389805 GVQW2A0A096LPI5 108 aaPredicted RBP11.55□□□□□ -0.56
SQSTM1-202ENST00000389805 SEC61GP60059 68 aa11.55□□□□□ -0.56
SQSTM1-202ENST00000389805 C15orf56Q8N910 161 aa11.55□□□□□ -0.56
SQSTM1-202ENST00000389805 M0R378 163 aa11.54□□□□□ -0.56
SQSTM1-202ENST00000389805 IGKV2D-24A0A075B6R9 120 aa11.53□□□□□ -0.56
SQSTM1-202ENST00000389805 PSPHP1O15172 72 aa11.52□□□□□ -0.57
SQSTM1-202ENST00000389805 DNAH3Q8TD57 4116 aa11.51□□□□□ -0.57
SQSTM1-202ENST00000389805 C1orf64Q8NEQ6 169 aa11.51□□□□□ -0.57
SQSTM1-202ENST00000389805 hDV103S1A0JD37 113 aa11.5□□□□□ -0.57
SQSTM1-202ENST00000389805 Q8N377 158 aa11.49□□□□□ -0.57
SQSTM1-202ENST00000389805 Q6ZRP5 223 aa11.49□□□□□ -0.57
SQSTM1-202ENST00000389805 BAHCC1Q9P281 2608 aa11.49□□□□□ -0.57
SQSTM1-202ENST00000389805 LINC01556Q5JQF7 62 aa11.47□□□□□ -0.57
SQSTM1-202ENST00000389805 A0A1W2PNM2 257 aa11.45□□□□□ -0.58
SQSTM1-202ENST00000389805 CASC10Q5T4H9 136 aa11.43□□□□□ -0.58
SQSTM1-202ENST00000389805 RPL37AP8A6NKH3 93 aa11.42□□□□□ -0.58
SQSTM1-202ENST00000389805 K7EQZ3 153 aa11.41□□□□□ -0.58
SQSTM1-202ENST00000389805 ST20-AS1Q8NBB2 130 aa11.41□□□□□ -0.58
SQSTM1-202ENST00000389805 LINC00588Q9Y4M8 146 aa11.41□□□□□ -0.58
SQSTM1-202ENST00000389805 SYCNQ0VAF6 134 aa11.4□□□□□ -0.58
SQSTM1-202ENST00000389805 SERTAD4-AS1Q5TG53 156 aa11.4□□□□□ -0.58
SQSTM1-202ENST00000389805 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.4□□□□□ -0.58
SQSTM1-202ENST00000389805 C1orf137Q5JT78 98 aa11.4□□□□□ -0.58
SQSTM1-202ENST00000389805 NKAPP1Q8N9T2 125 aa11.4□□□□□ -0.58
SQSTM1-202ENST00000389805 HUWE1Q7Z6Z7 4374 aaKnown RBP11.4□□□□□ -0.58
SQSTM1-202ENST00000389805 IGLV5-48A0A075B6I7 105 aa11.39□□□□□ -0.59
SQSTM1-202ENST00000389805 DEFB116Q30KQ4 102 aa11.39□□□□□ -0.59
SQSTM1-202ENST00000389805 DNAH10OSP0CZ25 163 aa11.39□□□□□ -0.59
SQSTM1-202ENST00000389805 TRAV22A0A0B4J277 110 aa11.38□□□□□ -0.59
SQSTM1-202ENST00000389805 A0A0G2JQZ4 141 aa11.38□□□□□ -0.59
SQSTM1-202ENST00000389805 A0A1W2PNN7 141 aa11.38□□□□□ -0.59
SQSTM1-202ENST00000389805 LYSTQ99698 3801 aa11.38□□□□□ -0.59
SQSTM1-202ENST00000389805 ETDCA0A1B0GVM5 59 aa11.38□□□□□ -0.59
SQSTM1-202ENST00000389805 DSCR10P59022 87 aa11.38□□□□□ -0.59
SQSTM1-202ENST00000389805 C7orf33Q8WU49 177 aa11.38□□□□□ -0.59
SQSTM1-202ENST00000389805 PMAIP1Q13794 54 aa11.37□□□□□ -0.59
SQSTM1-202ENST00000389805 Q1T7F1 81 aa11.37□□□□□ -0.59
SQSTM1-202ENST00000389805 PRR15Q8IV56 129 aa11.37□□□□□ -0.59
SQSTM1-202ENST00000389805 A8MU10 97 aa11.37□□□□□ -0.59
SQSTM1-202ENST00000389805 K7EIL1 84 aa11.37□□□□□ -0.59
SQSTM1-202ENST00000389805 STAB2Q8WWQ8 2551 aa11.35□□□□□ -0.59
SQSTM1-202ENST00000389805 ZCCHC13Q8WW36 166 aaKnown RBP11.35□□□□□ -0.59
SQSTM1-202ENST00000389805 LCE6AA0A183 80 aa11.35□□□□□ -0.59
SQSTM1-202ENST00000389805 Q9BRP9 147 aa11.34□□□□□ -0.59
SQSTM1-202ENST00000389805 A8MUN3 132 aa11.34□□□□□ -0.59
SQSTM1-202ENST00000389805 KCNQ1DNQ9H478 68 aa11.34□□□□□ -0.59
SQSTM1-202ENST00000389805 COL7A1Q02388 2944 aa11.34□□□□□ -0.59
SQSTM1-202ENST00000389805 TENM2Q9NT68 2774 aa11.33□□□□□ -0.6
SQSTM1-202ENST00000389805 FAM168BA1KXE4 195 aa11.33□□□□□ -0.6
SQSTM1-202ENST00000389805 Q8NBF4 154 aa11.32□□□□□ -0.6
SQSTM1-202ENST00000389805 WFDC13Q8IUB5 93 aa11.31□□□□□ -0.6
SQSTM1-202ENST00000389805 Q6ZRX8 168 aa11.29□□□□□ -0.6
SQSTM1-202ENST00000389805 DNAH1Q9P2D7 4330 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms