RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 HIGD2BQ4VC39 106 aa8.2□□□□□ -1.1
CIITA-202ENST00000381835 C6orf223Q8N319 242 aa8.2□□□□□ -1.1
CIITA-202ENST00000381835 C4orf26Q17RF5 130 aa8.19□□□□□ -1.1
CIITA-202ENST00000381835 C9orf116Q5BN46 136 aaPredicted RBP8.19□□□□□ -1.1
CIITA-202ENST00000381835 CYSTM1Q9H1C7 97 aa8.19□□□□□ -1.1
CIITA-202ENST00000381835 C6orf99Q4VX62 202 aa8.19□□□□□ -1.1
CIITA-202ENST00000381835 Q5XG85 94 aa8.19□□□□□ -1.1
CIITA-202ENST00000381835 C15orf56Q8N910 161 aa8.19□□□□□ -1.1
CIITA-202ENST00000381835 V9GYY9 64 aa8.19□□□□□ -1.1
CIITA-202ENST00000381835 ZNF561-AS1K7EIQ3 104 aa8.18□□□□□ -1.1
CIITA-202ENST00000381835 PSCAO43653 123 aa8.17□□□□□ -1.1
CIITA-202ENST00000381835 ATP5EP2Q5VTU8 51 aa8.17□□□□□ -1.1
CIITA-202ENST00000381835 UNQ6190/PRO20217Q6UXQ8 127 aa8.16□□□□□ -1.1
CIITA-202ENST00000381835 LINC00476Q8WZB0 136 aa8.16□□□□□ -1.1
CIITA-202ENST00000381835 UBL5Q9BZL1 73 aa8.16□□□□□ -1.1
CIITA-202ENST00000381835 C10orf25Q5T742 122 aa8.15□□□□□ -1.1
CIITA-202ENST00000381835 Q8NDZ9 215 aa8.15□□□□□ -1.1
CIITA-202ENST00000381835 LINC00575Q6W349 94 aa8.15□□□□□ -1.1
CIITA-202ENST00000381835 TRAV23DV6A0A075B6W5 121 aa8.14□□□□□ -1.11
CIITA-202ENST00000381835 FAM19A1Q7Z5A9 133 aa8.14□□□□□ -1.11
CIITA-202ENST00000381835 CAMK2N2Q96S95 79 aa8.14□□□□□ -1.11
CIITA-202ENST00000381835 GVQW2A0A096LPI5 108 aaPredicted RBP8.13□□□□□ -1.11
CIITA-202ENST00000381835 GHRHP01286 108 aa8.13□□□□□ -1.11
CIITA-202ENST00000381835 RBM3P98179 157 aaKnown RBP8.13□□□□□ -1.11
CIITA-202ENST00000381835 LAMTOR3Q9UHA4 124 aa8.12□□□□□ -1.11
CIITA-202ENST00000381835 Q6ZR54 194 aa8.12□□□□□ -1.11
CIITA-202ENST00000381835 ALMS1Q8TCU4 4167 aa8.12□□□□□ -1.11
CIITA-202ENST00000381835 TRBV10-3A0A0K0K1G6 114 aa8.11□□□□□ -1.11
CIITA-202ENST00000381835 Q6ZQT0 140 aa8.11□□□□□ -1.11
CIITA-202ENST00000381835 Q6ZRU5 148 aa8.11□□□□□ -1.11
CIITA-202ENST00000381835 C6orf48Q9UBA6 75 aa8.11□□□□□ -1.11
CIITA-202ENST00000381835 Q6ZRN7 208 aaPredicted RBP8.1□□□□□ -1.11
CIITA-202ENST00000381835 SYCNQ0VAF6 134 aa8.09□□□□□ -1.11
CIITA-202ENST00000381835 LOC110117498A0A087WWA1 95 aa8.09□□□□□ -1.11
CIITA-202ENST00000381835 OXTP01178 125 aa8.09□□□□□ -1.11
CIITA-202ENST00000381835 HYDINQ4G0P3 5121 aa8.09□□□□□ -1.11
CIITA-202ENST00000381835 DNAH6Q9C0G6 4158 aa8.09□□□□□ -1.11
CIITA-202ENST00000381835 DSCR8Q96T75 97 aa8.08□□□□□ -1.12
CIITA-202ENST00000381835 IGLV6-57P01721 117 aa8.08□□□□□ -1.12
CIITA-202ENST00000381835 DNAH2Q9P225 4427 aa8.07□□□□□ -1.12
CIITA-202ENST00000381835 Q6ZQY7 126 aa8.07□□□□□ -1.12
CIITA-202ENST00000381835 PKIGQ9Y2B9 76 aa8.07□□□□□ -1.12
CIITA-202ENST00000381835 NDUFC2-KCTD14E9PQ53 114 aa8.07□□□□□ -1.12
CIITA-202ENST00000381835 C1orf134Q5TEV5 83 aa8.07□□□□□ -1.12
CIITA-202ENST00000381835 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.06□□□□□ -1.12
CIITA-202ENST00000381835 LRCOL1A6NCL2 159 aa8.06□□□□□ -1.12
CIITA-202ENST00000381835 HAMPP81172 84 aa8.06□□□□□ -1.12
CIITA-202ENST00000381835 C1orf195Q5TG92 126 aa8.06□□□□□ -1.12
CIITA-202ENST00000381835 LINC00336Q6ZUF6 198 aa8.06□□□□□ -1.12
CIITA-202ENST00000381835 LINC01547P58512 204 aaPredicted RBP8.05□□□□□ -1.12
CIITA-202ENST00000381835 C20orf197Q8N268 126 aa8.05□□□□□ -1.12
CIITA-202ENST00000381835 H3BQ85 93 aa8.04□□□□□ -1.12
CIITA-202ENST00000381835 C14orf177Q52M58 125 aa8.04□□□□□ -1.12
CIITA-202ENST00000381835 Q6ZVQ6 151 aa8.04□□□□□ -1.12
CIITA-202ENST00000381835 PDE6GP18545 87 aa8.03□□□□□ -1.12
CIITA-202ENST00000381835 DIRC1Q969H9 104 aa8.03□□□□□ -1.12
CIITA-202ENST00000381835 XAGE1AQ9HD64 81 aa8.03□□□□□ -1.12
CIITA-202ENST00000381835 Q6ZRP5 223 aa8.02□□□□□ -1.13
CIITA-202ENST00000381835 TRAV7A0A075B6U4 112 aa8.01□□□□□ -1.13
CIITA-202ENST00000381835 A0A087WTM6 91 aa8.01□□□□□ -1.13
CIITA-202ENST00000381835 BCE1O60756 84 aa8.01□□□□□ -1.13
CIITA-202ENST00000381835 FRAS1Q86XX4 4008 aa8.01□□□□□ -1.13
CIITA-202ENST00000381835 ZNF73O43830 326 aaPredicted RBP8.01□□□□□ -1.13
CIITA-202ENST00000381835 COX7BP24311 80 aa8.01□□□□□ -1.13
CIITA-202ENST00000381835 FAM236DA0A1B0GTK5 79 aa8□□□□□ -1.13
CIITA-202ENST00000381835 FAM236CP0DP71 79 aa8□□□□□ -1.13
CIITA-202ENST00000381835 CNBPP62633 177 aaKnown RBP8□□□□□ -1.13
CIITA-202ENST00000381835 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8□□□□□ -1.13
CIITA-202ENST00000381835 SACSQ9NZJ4 4579 aa8□□□□□ -1.13
CIITA-202ENST00000381835 CXCL6P80162 114 aa8□□□□□ -1.13
CIITA-202ENST00000381835 HECTD4Q9Y4D8 3996 aa7.99□□□□□ -1.13
CIITA-202ENST00000381835 EPM2AB3EWF7 344 aa7.98□□□□□ -1.13
CIITA-202ENST00000381835 SERP1Q9Y6X1 66 aa7.98□□□□□ -1.13
CIITA-202ENST00000381835 LCE6AA0A183 80 aa7.98□□□□□ -1.13
CIITA-202ENST00000381835 ELOF1P60002 83 aaKnown RBP7.98□□□□□ -1.13
CIITA-202ENST00000381835 TLX1NBP0CAT3 122 aa7.97□□□□□ -1.13
CIITA-202ENST00000381835 TNP2Q05952 138 aa7.97□□□□□ -1.13
CIITA-202ENST00000381835 TRBV7-4A0A0J9YYF1 115 aa7.97□□□□□ -1.13
CIITA-202ENST00000381835 RTL8CO15255 209 aa7.97□□□□□ -1.13
CIITA-202ENST00000381835 FUSP35637 526 aaKnown RBP eCLIP7.97□□□□□ -1.13
CIITA-202ENST00000381835 DNAH17Q9UFH2 4485 aa7.97□□□□□ -1.13
CIITA-202ENST00000381835 SCXQ7RTU7 201 aa7.96□□□□□ -1.14
CIITA-202ENST00000381835 TRBV7-6A0A0J9YX20 115 aa7.95□□□□□ -1.14
CIITA-202ENST00000381835 H7BZZ5 65 aa7.95□□□□□ -1.14
CIITA-202ENST00000381835 VPREB1P12018 145 aa7.95□□□□□ -1.14
CIITA-202ENST00000381835 C9orf163Q8N9P6 203 aa7.95□□□□□ -1.14
CIITA-202ENST00000381835 KLKP1Q107X0 134 aa7.94□□□□□ -1.14
CIITA-202ENST00000381835 SMIM26A0A096LP01 95 aa7.94□□□□□ -1.14
CIITA-202ENST00000381835 IGKV2-24A0A0C4DH68 120 aa7.94□□□□□ -1.14
CIITA-202ENST00000381835 M0R378 163 aa7.94□□□□□ -1.14
CIITA-202ENST00000381835 SNURFQ9Y675 71 aa7.94□□□□□ -1.14
CIITA-202ENST00000381835 KMT2CQ8NEZ4 4911 aaKnown RBP7.93□□□□□ -1.14
CIITA-202ENST00000381835 A0A096LNI7 61 aa7.93□□□□□ -1.14
CIITA-202ENST00000381835 FAM168BA1KXE4 195 aa7.92□□□□□ -1.14
CIITA-202ENST00000381835 C16orf90A8MZG2 172 aa7.91□□□□□ -1.14
CIITA-202ENST00000381835 SERTAD4-AS1Q5TG53 156 aa7.91□□□□□ -1.14
CIITA-202ENST00000381835 LINC00528Q8N1L1 170 aa7.91□□□□□ -1.14
CIITA-202ENST00000381835 CHTF8P0CG12 524 aa7.9□□□□□ -1.14
CIITA-202ENST00000381835 IGLV5-52A0A0A0MRZ9 124 aa7.9□□□□□ -1.15
CIITA-202ENST00000381835 FAT2Q9NYQ8 4349 aa7.9□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms