RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 TRBV7-6A0A0J9YX20 115 aa12.16□□□□□ -0.46
CCDC3-201ENST00000378825 MIFP14174 115 aa12.16□□□□□ -0.46
CCDC3-201ENST00000378825 IGKV4-1P06312 121 aa12.15□□□□□ -0.47
CCDC3-201ENST00000378825 TMEM254Q8TBM7 123 aa12.14□□□□□ -0.47
CCDC3-201ENST00000378825 KRTAP26-1Q6PEX3 210 aa12.14□□□□□ -0.47
CCDC3-201ENST00000378825 Q6ZRP5 223 aa12.14□□□□□ -0.47
CCDC3-201ENST00000378825 C15orf56Q8N910 161 aa12.14□□□□□ -0.47
CCDC3-201ENST00000378825 RETNQ9HD89 108 aa12.14□□□□□ -0.47
CCDC3-201ENST00000378825 M0R378 163 aa12.13□□□□□ -0.47
CCDC3-201ENST00000378825 OXLD1Q5BKU9 147 aa12.13□□□□□ -0.47
CCDC3-201ENST00000378825 FAM229BQ4G0N7 80 aa12.12□□□□□ -0.47
CCDC3-201ENST00000378825 FBN1P35555 2871 aaKnown RBP12.1□□□□□ -0.47
CCDC3-201ENST00000378825 H3BQ85 93 aa12.1□□□□□ -0.47
CCDC3-201ENST00000378825 EGFEM1PQ0D2K5 195 aa12.09□□□□□ -0.47
CCDC3-201ENST00000378825 NOTCH1P46531 2555 aa12.08□□□□□ -0.47
CCDC3-201ENST00000378825 MAST4O15021 2626 aa12.08□□□□□ -0.48
CCDC3-201ENST00000378825 SERTAD4-AS1Q5TG53 156 aa12.07□□□□□ -0.48
CCDC3-201ENST00000378825 OCR1Q9BZK8 76 aa12.07□□□□□ -0.48
CCDC3-201ENST00000378825 BAHCC1Q9P281 2608 aa12.07□□□□□ -0.48
CCDC3-201ENST00000378825 SMIM26A0A096LP01 95 aa12.07□□□□□ -0.48
CCDC3-201ENST00000378825 KPRPQ5T749 579 aaPredicted RBP12.06□□□□□ -0.48
CCDC3-201ENST00000378825 Q8N377 158 aa12.06□□□□□ -0.48
CCDC3-201ENST00000378825 HIGD2AQ9BW72 106 aa12.06□□□□□ -0.48
CCDC3-201ENST00000378825 KRTAP10-11P60412 298 aa12.03□□□□□ -0.48
CCDC3-201ENST00000378825 RPL37AP8A6NKH3 93 aa12.03□□□□□ -0.48
CCDC3-201ENST00000378825 MPLKIPQ8TAP9 179 aa12.03□□□□□ -0.48
CCDC3-201ENST00000378825 Q6ZTC4 211 aa12.02□□□□□ -0.48
CCDC3-201ENST00000378825 NDUFC1O43677 76 aa12.02□□□□□ -0.49
CCDC3-201ENST00000378825 IGKV2D-24A0A075B6R9 120 aa12.02□□□□□ -0.49
CCDC3-201ENST00000378825 ESRGQ1W209 222 aa12.02□□□□□ -0.49
CCDC3-201ENST00000378825 FAM30AQ9NZY2 134 aa12.02□□□□□ -0.49
CCDC3-201ENST00000378825 A0A0U1RQV1 116 aa12.01□□□□□ -0.49
CCDC3-201ENST00000378825 C7orf33Q8WU49 177 aa12.01□□□□□ -0.49
CCDC3-201ENST00000378825 PRYO14603 147 aa12.01□□□□□ -0.49
CCDC3-201ENST00000378825 FAM168BA1KXE4 195 aa12□□□□□ -0.49
CCDC3-201ENST00000378825 SMIM29Q86T20 159 aa12□□□□□ -0.49
CCDC3-201ENST00000378825 ST20-AS1Q8NBB2 130 aa12□□□□□ -0.49
CCDC3-201ENST00000378825 CMYA5Q8N3K9 4069 aa11.99□□□□□ -0.49
CCDC3-201ENST00000378825 A0A1W2PNM2 257 aa11.98□□□□□ -0.49
CCDC3-201ENST00000378825 PRO0628Q9UI54 55 aa11.98□□□□□ -0.49
CCDC3-201ENST00000378825 C1orf43Q9BWL3 253 aa11.98□□□□□ -0.49
CCDC3-201ENST00000378825 NKAPP1Q8N9T2 125 aa11.97□□□□□ -0.49
CCDC3-201ENST00000378825 Q9BRP9 147 aa11.97□□□□□ -0.49
CCDC3-201ENST00000378825 SYCNQ0VAF6 134 aa11.96□□□□□ -0.49
CCDC3-201ENST00000378825 KCNQ1DNQ9H478 68 aa11.96□□□□□ -0.49
CCDC3-201ENST00000378825 A0A0G2JQZ4 141 aa11.95□□□□□ -0.5
CCDC3-201ENST00000378825 A0A1W2PNN7 141 aa11.95□□□□□ -0.5
CCDC3-201ENST00000378825 ERC2-IT1O76042 136 aa11.95□□□□□ -0.5
CCDC3-201ENST00000378825 MRAPQ8TCY5 172 aa11.95□□□□□ -0.5
CCDC3-201ENST00000378825 FUSP35637 526 aaKnown RBP eCLIP11.94□□□□□ -0.5
CCDC3-201ENST00000378825 PKIGQ9Y2B9 76 aa11.94□□□□□ -0.5
CCDC3-201ENST00000378825 IGLV5-48A0A075B6I7 105 aa11.94□□□□□ -0.5
CCDC3-201ENST00000378825 LRCOL1A6NCL2 159 aa11.93□□□□□ -0.5
CCDC3-201ENST00000378825 COL6A5A8TX70 2615 aa11.93□□□□□ -0.5
CCDC3-201ENST00000378825 BRK1Q8WUW1 75 aa11.93□□□□□ -0.5
CCDC3-201ENST00000378825 KRTAP24-1Q3LI83 254 aa11.92□□□□□ -0.5
CCDC3-201ENST00000378825 CASC10Q5T4H9 136 aa11.92□□□□□ -0.5
CCDC3-201ENST00000378825 NBEAL1Q6ZS30 2694 aa11.91□□□□□ -0.5
CCDC3-201ENST00000378825 ATP5EP56381 51 aaPredicted RBP11.91□□□□□ -0.5
CCDC3-201ENST00000378825 C1orf137Q5JT78 98 aa11.9□□□□□ -0.5
CCDC3-201ENST00000378825 KRTAP7-1Q8IUC3 87 aa11.9□□□□□ -0.5
CCDC3-201ENST00000378825 Q6ZRX8 168 aa11.89□□□□□ -0.51
CCDC3-201ENST00000378825 SRRM2Q9UQ35 2752 aaKnown RBP11.88□□□□□ -0.51
CCDC3-201ENST00000378825 PRB2P02812 416 aaPredicted RBP11.88□□□□□ -0.51
CCDC3-201ENST00000378825 KRTAP4-16G5E9R7 235 aaPredicted RBP11.87□□□□□ -0.51
CCDC3-201ENST00000378825 K7EQZ3 153 aa11.87□□□□□ -0.51
CCDC3-201ENST00000378825 DSCR10P59022 87 aa11.87□□□□□ -0.51
CCDC3-201ENST00000378825 TNP2Q05952 138 aa11.86□□□□□ -0.51
CCDC3-201ENST00000378825 DEFB116Q30KQ4 102 aa11.85□□□□□ -0.51
CCDC3-201ENST00000378825 CSMD3Q7Z407 3707 aa11.84□□□□□ -0.51
CCDC3-201ENST00000378825 PRR4Q16378 134 aa11.84□□□□□ -0.51
CCDC3-201ENST00000378825 DEFB131BA0A096LNP1 70 aa11.83□□□□□ -0.52
CCDC3-201ENST00000378825 ETDCA0A1B0GVM5 59 aa11.83□□□□□ -0.52
CCDC3-201ENST00000378825 LINC01556Q5JQF7 62 aa11.83□□□□□ -0.52
CCDC3-201ENST00000378825 Q8NBF4 154 aa11.83□□□□□ -0.52
CCDC3-201ENST00000378825 IGLV1-50A0A075B6I6 118 aa11.83□□□□□ -0.52
CCDC3-201ENST00000378825 H3BNG1 76 aa11.81□□□□□ -0.52
CCDC3-201ENST00000378825 C11orf45Q8TAV5 145 aa11.81□□□□□ -0.52
CCDC3-201ENST00000378825 DHRS4-AS1Q9P1J3 65 aa11.81□□□□□ -0.52
CCDC3-201ENST00000378825 DNAH10Q8IVF4 4471 aa11.8□□□□□ -0.52
CCDC3-201ENST00000378825 DNAH1Q9P2D7 4330 aa11.79□□□□□ -0.52
CCDC3-201ENST00000378825 DNAH3Q8TD57 4116 aa11.79□□□□□ -0.52
CCDC3-201ENST00000378825 UBE2BP63146 152 aa11.79□□□□□ -0.52
CCDC3-201ENST00000378825 SPRR1AP35321 89 aa11.78□□□□□ -0.52
CCDC3-201ENST00000378825 C1orf64Q8NEQ6 169 aa11.77□□□□□ -0.52
CCDC3-201ENST00000378825 LYSTQ99698 3801 aa11.77□□□□□ -0.52
CCDC3-201ENST00000378825 MGAM2Q2M2H8 2515 aa11.76□□□□□ -0.53
CCDC3-201ENST00000378825 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.76□□□□□ -0.53
CCDC3-201ENST00000378825 LCE6AA0A183 80 aa11.76□□□□□ -0.53
CCDC3-201ENST00000378825 hDV103S1A0JD37 113 aa11.76□□□□□ -0.53
CCDC3-201ENST00000378825 SPRR4Q96PI1 79 aa11.76□□□□□ -0.53
CCDC3-201ENST00000378825 ZCCHC13Q8WW36 166 aaKnown RBP11.74□□□□□ -0.53
CCDC3-201ENST00000378825 LINC00476Q8WZB0 136 aa11.74□□□□□ -0.53
CCDC3-201ENST00000378825 TLX1NBP0CAT3 122 aa11.73□□□□□ -0.53
CCDC3-201ENST00000378825 MRPL55Q7Z7F7 128 aaKnown RBP11.73□□□□□ -0.53
CCDC3-201ENST00000378825 WFDC13Q8IUB5 93 aa11.72□□□□□ -0.53
CCDC3-201ENST00000378825 PSCAO43653 123 aa11.71□□□□□ -0.54
CCDC3-201ENST00000378825 DNAH10OSP0CZ25 163 aa11.71□□□□□ -0.54
CCDC3-201ENST00000378825 PLA2G2DQ9UNK4 145 aa11.71□□□□□ -0.54
CCDC3-201ENST00000378825 RPL37AP61513 92 aaKnown RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms