RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 ALMS1Q8TCU4 4167 aa9.53□□□□□ -0.88
HMGA1-203ENST00000374116 WFDC10BQ8IUB3 73 aa9.52□□□□□ -0.89
HMGA1-203ENST00000374116 DNAH1Q9P2D7 4330 aa9.52□□□□□ -0.89
HMGA1-203ENST00000374116 KLK12Q9UKR0 248 aa9.52□□□□□ -0.89
HMGA1-203ENST00000374116 SMIM26A0A096LP01 95 aa9.51□□□□□ -0.89
HMGA1-203ENST00000374116 C20orf197Q8N268 126 aa9.51□□□□□ -0.89
HMGA1-203ENST00000374116 F8WDY8 70 aa9.5□□□□□ -0.89
HMGA1-203ENST00000374116 ENHOQ6UWT2 76 aa9.5□□□□□ -0.89
HMGA1-203ENST00000374116 SACSQ9NZJ4 4579 aa9.5□□□□□ -0.89
HMGA1-203ENST00000374116 VPS13DQ5THJ4 4388 aa9.49□□□□□ -0.89
HMGA1-203ENST00000374116 TRAV23DV6A0A075B6W5 121 aa9.49□□□□□ -0.89
HMGA1-203ENST00000374116 ATP5EP56381 51 aaPredicted RBP9.49□□□□□ -0.89
HMGA1-203ENST00000374116 SPAG11BQ08648 103 aa9.49□□□□□ -0.89
HMGA1-203ENST00000374116 LINC00336Q6ZUF6 198 aa9.49□□□□□ -0.89
HMGA1-203ENST00000374116 RYR3Q15413 4870 aa9.48□□□□□ -0.89
HMGA1-203ENST00000374116 UBL5Q9BZL1 73 aa9.48□□□□□ -0.89
HMGA1-203ENST00000374116 TMEM256-PLSCR3K7ERE1 68 aa9.47□□□□□ -0.89
HMGA1-203ENST00000374116 FAM19A1Q7Z5A9 133 aa9.47□□□□□ -0.89
HMGA1-203ENST00000374116 KRTAP1-5Q9BYS1 174 aa9.47□□□□□ -0.89
HMGA1-203ENST00000374116 RYR2Q92736 4967 aa9.47□□□□□ -0.89
HMGA1-203ENST00000374116 NDUFC1O43677 76 aa9.46□□□□□ -0.9
HMGA1-203ENST00000374116 C9orf116Q5BN46 136 aaPredicted RBP9.46□□□□□ -0.9
HMGA1-203ENST00000374116 UNQ6190/PRO20217Q6UXQ8 127 aa9.45□□□□□ -0.9
HMGA1-203ENST00000374116 C6orf223Q8N319 242 aa9.45□□□□□ -0.9
HMGA1-203ENST00000374116 GVQW2A0A096LPI5 108 aaPredicted RBP9.44□□□□□ -0.9
HMGA1-203ENST00000374116 C10orf25Q5T742 122 aa9.44□□□□□ -0.9
HMGA1-203ENST00000374116 LOC110117498A0A087WWA1 95 aa9.43□□□□□ -0.9
HMGA1-203ENST00000374116 SLPIP03973 132 aa9.43□□□□□ -0.9
HMGA1-203ENST00000374116 FP248Q71RG6 208 aaPredicted RBP9.43□□□□□ -0.9
HMGA1-203ENST00000374116 Q8N814 137 aa9.43□□□□□ -0.9
HMGA1-203ENST00000374116 NBDYA0A0U1RRE5 68 aa9.42□□□□□ -0.9
HMGA1-203ENST00000374116 PRR3P79522 188 aaKnown RBP9.42□□□□□ -0.9
HMGA1-203ENST00000374116 KRTAP26-1Q6PEX3 210 aa9.42□□□□□ -0.9
HMGA1-203ENST00000374116 DNAH10OSP0CZ25 163 aa9.4□□□□□ -0.9
HMGA1-203ENST00000374116 Q6ZR54 194 aa9.4□□□□□ -0.9
HMGA1-203ENST00000374116 CXCL6P80162 114 aa9.4□□□□□ -0.91
HMGA1-203ENST00000374116 LINC01556Q5JQF7 62 aa9.39□□□□□ -0.91
HMGA1-203ENST00000374116 Q6ZQT0 140 aa9.39□□□□□ -0.91
HMGA1-203ENST00000374116 C1orf43Q9BWL3 253 aa9.38□□□□□ -0.91
HMGA1-203ENST00000374116 ZNF561-AS1K7EIQ3 104 aa9.38□□□□□ -0.91
HMGA1-203ENST00000374116 Q8NDZ9 215 aa9.38□□□□□ -0.91
HMGA1-203ENST00000374116 C6orf48Q9UBA6 75 aa9.38□□□□□ -0.91
HMGA1-203ENST00000374116 DNAH6Q9C0G6 4158 aa9.37□□□□□ -0.91
HMGA1-203ENST00000374116 LINC01547P58512 204 aaPredicted RBP9.37□□□□□ -0.91
HMGA1-203ENST00000374116 FRAS1Q86XX4 4008 aa9.36□□□□□ -0.91
HMGA1-203ENST00000374116 H3BQ85 93 aa9.36□□□□□ -0.91
HMGA1-203ENST00000374116 PDE6GP18545 87 aa9.36□□□□□ -0.91
HMGA1-203ENST00000374116 ERC2-IT1O76042 136 aa9.35□□□□□ -0.91
HMGA1-203ENST00000374116 DNAH10Q8IVF4 4471 aa9.35□□□□□ -0.91
HMGA1-203ENST00000374116 TRBV7-6A0A0J9YX20 115 aa9.35□□□□□ -0.91
HMGA1-203ENST00000374116 F8WEM9 126 aa9.35□□□□□ -0.91
HMGA1-203ENST00000374116 CAMK2N2Q96S95 79 aa9.35□□□□□ -0.91
HMGA1-203ENST00000374116 TRBV7-4A0A0J9YYF1 115 aa9.34□□□□□ -0.91
HMGA1-203ENST00000374116 C6orf99Q4VX62 202 aa9.34□□□□□ -0.91
HMGA1-203ENST00000374116 C1orf134Q5TEV5 83 aa9.34□□□□□ -0.91
HMGA1-203ENST00000374116 DNAH2Q9P225 4427 aa9.33□□□□□ -0.92
HMGA1-203ENST00000374116 IGLV6-57P01721 117 aa9.33□□□□□ -0.92
HMGA1-203ENST00000374116 HIGD2BQ4VC39 106 aa9.33□□□□□ -0.92
HMGA1-203ENST00000374116 RMI2Q96E14 147 aa9.33□□□□□ -0.92
HMGA1-203ENST00000374116 RTL8CO15255 209 aa9.33□□□□□ -0.92
HMGA1-203ENST00000374116 RBM3P98179 157 aaKnown RBP9.33□□□□□ -0.92
HMGA1-203ENST00000374116 Q6ZVQ6 151 aa9.33□□□□□ -0.92
HMGA1-203ENST00000374116 C15orf56Q8N910 161 aa9.33□□□□□ -0.92
HMGA1-203ENST00000374116 LINC00575Q6W349 94 aa9.31□□□□□ -0.92
HMGA1-203ENST00000374116 IGKV2D-24A0A075B6R9 120 aa9.3□□□□□ -0.92
HMGA1-203ENST00000374116 Q6ZRU5 148 aa9.3□□□□□ -0.92
HMGA1-203ENST00000374116 XAGE1AQ9HD64 81 aa9.3□□□□□ -0.92
HMGA1-203ENST00000374116 Q6ZRN7 208 aaPredicted RBP9.29□□□□□ -0.92
HMGA1-203ENST00000374116 SNURFQ9Y675 71 aa9.29□□□□□ -0.92
HMGA1-203ENST00000374116 TNP2Q05952 138 aa9.28□□□□□ -0.92
HMGA1-203ENST00000374116 PKIGQ9Y2B9 76 aa9.28□□□□□ -0.92
HMGA1-203ENST00000374116 C1orf195Q5TG92 126 aa9.27□□□□□ -0.93
HMGA1-203ENST00000374116 V9GYY9 64 aa9.27□□□□□ -0.93
HMGA1-203ENST00000374116 LINC00474Q9P2X8 69 aa9.26□□□□□ -0.93
HMGA1-203ENST00000374116 VPREB1P12018 145 aa9.26□□□□□ -0.93
HMGA1-203ENST00000374116 PSCAO43653 123 aa9.25□□□□□ -0.93
HMGA1-203ENST00000374116 FUSP35637 526 aaKnown RBP eCLIP9.25□□□□□ -0.93
HMGA1-203ENST00000374116 HAMPP81172 84 aa9.25□□□□□ -0.93
HMGA1-203ENST00000374116 SYCNQ0VAF6 134 aa9.25□□□□□ -0.93
HMGA1-203ENST00000374116 DIRC1Q969H9 104 aa9.25□□□□□ -0.93
HMGA1-203ENST00000374116 M0R378 163 aa9.24□□□□□ -0.93
HMGA1-203ENST00000374116 NREPQ16612 68 aa9.24□□□□□ -0.93
HMGA1-203ENST00000374116 TMEM254Q8TBM7 123 aa9.24□□□□□ -0.93
HMGA1-203ENST00000374116 ZNF73O43830 326 aaPredicted RBP9.23□□□□□ -0.93
HMGA1-203ENST00000374116 BRK1Q8WUW1 75 aa9.23□□□□□ -0.93
HMGA1-203ENST00000374116 FAT2Q9NYQ8 4349 aa9.22□□□□□ -0.93
HMGA1-203ENST00000374116 SEC61GP60059 68 aa9.22□□□□□ -0.93
HMGA1-203ENST00000374116 COX7BP24311 80 aa9.21□□□□□ -0.93
HMGA1-203ENST00000374116 LAMTOR3Q9UHA4 124 aa9.21□□□□□ -0.93
HMGA1-203ENST00000374116 Q6ZRP5 223 aa9.21□□□□□ -0.94
HMGA1-203ENST00000374116 A0A0U1RQV1 116 aa9.2□□□□□ -0.94
HMGA1-203ENST00000374116 ELOF1P60002 83 aaKnown RBP9.19□□□□□ -0.94
HMGA1-203ENST00000374116 DNAH17Q9UFH2 4485 aa9.19□□□□□ -0.94
HMGA1-203ENST00000374116 LRCOL1A6NCL2 159 aa9.19□□□□□ -0.94
HMGA1-203ENST00000374116 TLX1NBP0CAT3 122 aa9.19□□□□□ -0.94
HMGA1-203ENST00000374116 A0A087WTM6 91 aa9.18□□□□□ -0.94
HMGA1-203ENST00000374116 BPY2O14599 106 aa9.18□□□□□ -0.94
HMGA1-203ENST00000374116 PRYO14603 147 aa9.18□□□□□ -0.94
HMGA1-203ENST00000374116 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.18□□□□□ -0.94
HMGA1-203ENST00000374116 Q6ZQY7 126 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms