RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 DEFB105AQ8NG35 78 aa10.74□□□□□ -0.69
SDC4-201ENST00000372733 Q6ZTC4 211 aa10.73□□□□□ -0.69
SDC4-201ENST00000372733 NSD1Q96L73 2696 aaPredicted RBP10.73□□□□□ -0.69
SDC4-201ENST00000372733 TMEM254Q8TBM7 123 aa10.72□□□□□ -0.69
SDC4-201ENST00000372733 C1orf43Q9BWL3 253 aa10.72□□□□□ -0.69
SDC4-201ENST00000372733 IGKV2D-24A0A075B6R9 120 aa10.72□□□□□ -0.69
SDC4-201ENST00000372733 TEP1Q99973 2627 aaKnown RBP10.72□□□□□ -0.69
SDC4-201ENST00000372733 ESRGQ1W209 222 aa10.71□□□□□ -0.69
SDC4-201ENST00000372733 SERTAD4-AS1Q5TG53 156 aa10.71□□□□□ -0.69
SDC4-201ENST00000372733 WIPF1O43516 503 aa10.71□□□□□ -0.69
SDC4-201ENST00000372733 NDUFC1O43677 76 aa10.7□□□□□ -0.7
SDC4-201ENST00000372733 SYCNQ0VAF6 134 aa10.7□□□□□ -0.7
SDC4-201ENST00000372733 Q8N377 158 aa10.7□□□□□ -0.7
SDC4-201ENST00000372733 NKAPP1Q8N9T2 125 aa10.7□□□□□ -0.7
SDC4-201ENST00000372733 C7orf33Q8WU49 177 aa10.7□□□□□ -0.7
SDC4-201ENST00000372733 FP248Q71RG6 208 aaPredicted RBP10.69□□□□□ -0.7
SDC4-201ENST00000372733 H3BNG1 76 aa10.68□□□□□ -0.7
SDC4-201ENST00000372733 OCR1Q9BZK8 76 aa10.68□□□□□ -0.7
SDC4-201ENST00000372733 KCNQ1DNQ9H478 68 aa10.68□□□□□ -0.7
SDC4-201ENST00000372733 SMIM26A0A096LP01 95 aa10.65□□□□□ -0.7
SDC4-201ENST00000372733 LINC00474Q9P2X8 69 aa10.65□□□□□ -0.7
SDC4-201ENST00000372733 ERC2-IT1O76042 136 aa10.65□□□□□ -0.71
SDC4-201ENST00000372733 TENM3Q9P273 2699 aa10.64□□□□□ -0.71
SDC4-201ENST00000372733 RPL37AP8A6NKH3 93 aa10.64□□□□□ -0.71
SDC4-201ENST00000372733 IGLV5-48A0A075B6I7 105 aa10.63□□□□□ -0.71
SDC4-201ENST00000372733 ATP5EP56381 51 aaPredicted RBP10.63□□□□□ -0.71
SDC4-201ENST00000372733 LINC01556Q5JQF7 62 aa10.63□□□□□ -0.71
SDC4-201ENST00000372733 A0A0U1RQV1 116 aa10.63□□□□□ -0.71
SDC4-201ENST00000372733 PRYO14603 147 aa10.63□□□□□ -0.71
SDC4-201ENST00000372733 OXLD1Q5BKU9 147 aa10.63□□□□□ -0.71
SDC4-201ENST00000372733 FAM168BA1KXE4 195 aa10.62□□□□□ -0.71
SDC4-201ENST00000372733 LINC00336Q6ZUF6 198 aa10.62□□□□□ -0.71
SDC4-201ENST00000372733 Q9BRP9 147 aa10.62□□□□□ -0.71
SDC4-201ENST00000372733 A0A1W2PNM2 257 aa10.61□□□□□ -0.71
SDC4-201ENST00000372733 Q6ZRX8 168 aa10.6□□□□□ -0.71
SDC4-201ENST00000372733 ST20-AS1Q8NBB2 130 aa10.6□□□□□ -0.71
SDC4-201ENST00000372733 HIGD2AQ9BW72 106 aa10.6□□□□□ -0.71
SDC4-201ENST00000372733 FUSP35637 526 aaKnown RBP eCLIP10.6□□□□□ -0.71
SDC4-201ENST00000372733 SMIM29Q86T20 159 aa10.6□□□□□ -0.71
SDC4-201ENST00000372733 KRTAP10-11P60412 298 aa10.59□□□□□ -0.71
SDC4-201ENST00000372733 F8WDY8 70 aa10.59□□□□□ -0.71
SDC4-201ENST00000372733 FAM229BQ4G0N7 80 aa10.58□□□□□ -0.72
SDC4-201ENST00000372733 DEFB131BA0A096LNP1 70 aa10.58□□□□□ -0.72
SDC4-201ENST00000372733 FAM30AQ9NZY2 134 aa10.58□□□□□ -0.72
SDC4-201ENST00000372733 DHRS4-AS1Q9P1J3 65 aa10.58□□□□□ -0.72
SDC4-201ENST00000372733 KRTAP4-16G5E9R7 235 aaPredicted RBP10.57□□□□□ -0.72
SDC4-201ENST00000372733 C1orf137Q5JT78 98 aa10.57□□□□□ -0.72
SDC4-201ENST00000372733 ETDCA0A1B0GVM5 59 aa10.56□□□□□ -0.72
SDC4-201ENST00000372733 CASC10Q5T4H9 136 aa10.56□□□□□ -0.72
SDC4-201ENST00000372733 TNP2Q05952 138 aa10.56□□□□□ -0.72
SDC4-201ENST00000372733 F8P00451 2351 aa10.56□□□□□ -0.72
SDC4-201ENST00000372733 IGLV1-50A0A075B6I6 118 aa10.55□□□□□ -0.72
SDC4-201ENST00000372733 ANK2Q01484 3957 aa10.55□□□□□ -0.72
SDC4-201ENST00000372733 KRTAP7-1Q8IUC3 87 aa10.54□□□□□ -0.72
SDC4-201ENST00000372733 Q8NBF4 154 aa10.54□□□□□ -0.72
SDC4-201ENST00000372733 TLX1NBP0CAT3 122 aa10.54□□□□□ -0.72
SDC4-201ENST00000372733 DNAH10OSP0CZ25 163 aa10.53□□□□□ -0.72
SDC4-201ENST00000372733 SPRR1AP35321 89 aa10.53□□□□□ -0.72
SDC4-201ENST00000372733 PLA2G2DQ9UNK4 145 aa10.53□□□□□ -0.72
SDC4-201ENST00000372733 C11orf45Q8TAV5 145 aa10.52□□□□□ -0.73
SDC4-201ENST00000372733 PRO0628Q9UI54 55 aa10.52□□□□□ -0.73
SDC4-201ENST00000372733 MRAPQ8TCY5 172 aa10.52□□□□□ -0.73
SDC4-201ENST00000372733 MPLKIPQ8TAP9 179 aa10.51□□□□□ -0.73
SDC4-201ENST00000372733 IGLV5-37A0A075B6J1 123 aa10.5□□□□□ -0.73
SDC4-201ENST00000372733 DSCR10P59022 87 aa10.5□□□□□ -0.73
SDC4-201ENST00000372733 K7EQZ3 153 aa10.49□□□□□ -0.73
SDC4-201ENST00000372733 UBE2BP63146 152 aa10.49□□□□□ -0.73
SDC4-201ENST00000372733 A0A1B0GW54 56 aa10.49□□□□□ -0.73
SDC4-201ENST00000372733 SPRR4Q96PI1 79 aa10.48□□□□□ -0.73
SDC4-201ENST00000372733 A0A0G2JQZ4 141 aa10.48□□□□□ -0.73
SDC4-201ENST00000372733 A0A1W2PNN7 141 aa10.48□□□□□ -0.73
SDC4-201ENST00000372733 MRPL55Q7Z7F7 128 aaKnown RBP10.47□□□□□ -0.73
SDC4-201ENST00000372733 LCE6AA0A183 80 aa10.46□□□□□ -0.74
SDC4-201ENST00000372733 LINC00588Q9Y4M8 146 aa10.46□□□□□ -0.74
SDC4-201ENST00000372733 BAHCC1Q9P281 2608 aa10.45□□□□□ -0.74
SDC4-201ENST00000372733 DNAH1Q9P2D7 4330 aa10.44□□□□□ -0.74
SDC4-201ENST00000372733 STAB1Q9NY15 2570 aa10.44□□□□□ -0.74
SDC4-201ENST00000372733 LINC00476Q8WZB0 136 aa10.43□□□□□ -0.74
SDC4-201ENST00000372733 BRK1Q8WUW1 75 aa10.42□□□□□ -0.74
SDC4-201ENST00000372733 REG3GQ6UW15 175 aa10.41□□□□□ -0.74
SDC4-201ENST00000372733 MAST4O15021 2626 aa10.4□□□□□ -0.74
SDC4-201ENST00000372733 DEFB116Q30KQ4 102 aa10.4□□□□□ -0.74
SDC4-201ENST00000372733 ZCCHC13Q8WW36 166 aaKnown RBP10.4□□□□□ -0.74
SDC4-201ENST00000372733 HCG22E2RYF7 251 aa10.38□□□□□ -0.75
SDC4-201ENST00000372733 PSCAO43653 123 aa10.38□□□□□ -0.75
SDC4-201ENST00000372733 CMYA5Q8N3K9 4069 aa10.38□□□□□ -0.75
SDC4-201ENST00000372733 FBN1P35555 2871 aaKnown RBP10.38□□□□□ -0.75
SDC4-201ENST00000372733 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.38□□□□□ -0.75
SDC4-201ENST00000372733 hDV103S1A0JD37 113 aa10.38□□□□□ -0.75
SDC4-201ENST00000372733 LRCOL1A6NCL2 159 aa10.37□□□□□ -0.75
SDC4-201ENST00000372733 IGFL1Q6UW32 110 aa10.37□□□□□ -0.75
SDC4-201ENST00000372733 PRLHP81277 87 aa10.37□□□□□ -0.75
SDC4-201ENST00000372733 PKIGQ9Y2B9 76 aa10.37□□□□□ -0.75
SDC4-201ENST00000372733 NOTCH1P46531 2555 aa10.36□□□□□ -0.75
SDC4-201ENST00000372733 C1orf64Q8NEQ6 169 aa10.35□□□□□ -0.75
SDC4-201ENST00000372733 PRR4Q16378 134 aa10.35□□□□□ -0.75
SDC4-201ENST00000372733 WFDC13Q8IUB5 93 aa10.34□□□□□ -0.75
SDC4-201ENST00000372733 A0A087WSZ3 146 aa10.33□□□□□ -0.76
SDC4-201ENST00000372733 IGKV2-24A0A0C4DH68 120 aa10.33□□□□□ -0.76
SDC4-201ENST00000372733 A0A096LNI7 61 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 105.7 ms