RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 C8orf17Q9NRJ1 99 aa8.5□□□□□ -1.05
COL6A3-203ENST00000353578 IGLV8-61A0A075B6I0 122 aa8.5□□□□□ -1.05
COL6A3-203ENST00000353578 MGAM2Q2M2H8 2515 aa8.5□□□□□ -1.05
COL6A3-203ENST00000353578 IGLV7-46A0A075B6I9 117 aa8.5□□□□□ -1.05
COL6A3-203ENST00000353578 PHF5AQ7RTV0 110 aaKnown RBP8.49□□□□□ -1.05
COL6A3-203ENST00000353578 FAM104AQ969W3 186 aa8.49□□□□□ -1.05
COL6A3-203ENST00000353578 C10orf142B7Z368 130 aa8.48□□□□□ -1.05
COL6A3-203ENST00000353578 ST20-AS1Q8NBB2 130 aa8.48□□□□□ -1.05
COL6A3-203ENST00000353578 LINC01558Q9Y6Z2 57 aa8.46□□□□□ -1.05
COL6A3-203ENST00000353578 C15orf56Q8N910 161 aa8.46□□□□□ -1.05
COL6A3-203ENST00000353578 IGLV5-48A0A075B6I7 105 aa8.46□□□□□ -1.06
COL6A3-203ENST00000353578 HECTD1Q9ULT8 2610 aa8.45□□□□□ -1.06
COL6A3-203ENST00000353578 LINC00588Q9Y4M8 146 aa8.44□□□□□ -1.06
COL6A3-203ENST00000353578 FP248Q71RG6 208 aaPredicted RBP8.44□□□□□ -1.06
COL6A3-203ENST00000353578 IGFL1Q6UW32 110 aa8.43□□□□□ -1.06
COL6A3-203ENST00000353578 NOTCH1P46531 2555 aa8.43□□□□□ -1.06
COL6A3-203ENST00000353578 TLX1NBP0CAT3 122 aa8.42□□□□□ -1.06
COL6A3-203ENST00000353578 Q8N9P0 234 aaPredicted RBP8.42□□□□□ -1.06
COL6A3-203ENST00000353578 SPRR4Q96PI1 79 aa8.41□□□□□ -1.06
COL6A3-203ENST00000353578 IGLV1-50A0A075B6I6 118 aa8.41□□□□□ -1.06
COL6A3-203ENST00000353578 C18orf65Q6ZTR6 163 aa8.41□□□□□ -1.06
COL6A3-203ENST00000353578 DNAH10OSP0CZ25 163 aa8.4□□□□□ -1.06
COL6A3-203ENST00000353578 MAST4O15021 2626 aa8.39□□□□□ -1.07
COL6A3-203ENST00000353578 HELZ2Q9BYK8 2649 aaKnown RBP8.39□□□□□ -1.07
COL6A3-203ENST00000353578 PLA2G1BP04054 148 aaKnown RBP8.39□□□□□ -1.07
COL6A3-203ENST00000353578 LINC00483Q53H64 154 aa8.39□□□□□ -1.07
COL6A3-203ENST00000353578 ATRQ13535 2644 aa8.39□□□□□ -1.07
COL6A3-203ENST00000353578 C1orf134Q5TEV5 83 aa8.39□□□□□ -1.07
COL6A3-203ENST00000353578 A0A087X002 238 aa8.38□□□□□ -1.07
COL6A3-203ENST00000353578 DMBT1Q9UGM3 2413 aaPredicted RBP8.37□□□□□ -1.07
COL6A3-203ENST00000353578 M0R2N4 97 aa8.37□□□□□ -1.07
COL6A3-203ENST00000353578 GCN1Q92616 2671 aaKnown RBP8.37□□□□□ -1.07
COL6A3-203ENST00000353578 Q5VV11 94 aa8.37□□□□□ -1.07
COL6A3-203ENST00000353578 PRR34Q9NV39 138 aa8.36□□□□□ -1.07
COL6A3-203ENST00000353578 FLNAP21333 2647 aaKnown RBP8.36□□□□□ -1.07
COL6A3-203ENST00000353578 Q8N377 158 aa8.36□□□□□ -1.07
COL6A3-203ENST00000353578 SPACA4Q8TDM5 124 aa8.35□□□□□ -1.07
COL6A3-203ENST00000353578 C9orf129Q5T035 196 aaKnown RBP8.35□□□□□ -1.07
COL6A3-203ENST00000353578 APLNQ9ULZ1 77 aa8.35□□□□□ -1.07
COL6A3-203ENST00000353578 CAMK2N1Q7Z7J9 78 aa8.32□□□□□ -1.08
COL6A3-203ENST00000353578 LY6G6CO95867 125 aa8.32□□□□□ -1.08
COL6A3-203ENST00000353578 TNP2Q05952 138 aa8.32□□□□□ -1.08
COL6A3-203ENST00000353578 Q96NJ1 140 aa8.3□□□□□ -1.08
COL6A3-203ENST00000353578 IGLV5-37A0A075B6J1 123 aa8.3□□□□□ -1.08
COL6A3-203ENST00000353578 INAFM1C9JVW0 142 aa8.3□□□□□ -1.08
COL6A3-203ENST00000353578 A0A1B0GU33 70 aa8.29□□□□□ -1.08
COL6A3-203ENST00000353578 STAB1Q9NY15 2570 aa8.28□□□□□ -1.08
COL6A3-203ENST00000353578 UNC79Q9P2D8 2635 aa8.27□□□□□ -1.09
COL6A3-203ENST00000353578 Q8NAQ8 132 aa8.27□□□□□ -1.09
COL6A3-203ENST00000353578 TYMSOSQ8TAI1 123 aa8.25□□□□□ -1.09
COL6A3-203ENST00000353578 KRTAP16-1A8MUX0 517 aa8.24□□□□□ -1.09
COL6A3-203ENST00000353578 CSNK1G2-AS1Q8NCQ2 148 aa8.22□□□□□ -1.09
COL6A3-203ENST00000353578 CFAP46Q8IYW2 2715 aa8.22□□□□□ -1.09
COL6A3-203ENST00000353578 A0A1W2PNM2 257 aa8.21□□□□□ -1.09
COL6A3-203ENST00000353578 COL6A5A8TX70 2615 aa8.21□□□□□ -1.09
COL6A3-203ENST00000353578 FAM229BQ4G0N7 80 aa8.21□□□□□ -1.09
COL6A3-203ENST00000353578 CSAG1Q6PB30 78 aa8.21□□□□□ -1.09
COL6A3-203ENST00000353578 CHD6Q8TD26 2715 aa8.2□□□□□ -1.1
COL6A3-203ENST00000353578 ZNF861PO60384 105 aa8.2□□□□□ -1.1
COL6A3-203ENST00000353578 LINC00612Q8N6U2 182 aa8.2□□□□□ -1.1
COL6A3-203ENST00000353578 DSCR10P59022 87 aa8.2□□□□□ -1.1
COL6A3-203ENST00000353578 C9orf163Q8N9P6 203 aa8.2□□□□□ -1.1
COL6A3-203ENST00000353578 KMT2BQ9UMN6 2715 aaPredicted RBP8.18□□□□□ -1.1
COL6A3-203ENST00000353578 CNBPP62633 177 aaKnown RBP8.16□□□□□ -1.1
COL6A3-203ENST00000353578 STAB2Q8WWQ8 2551 aa8.15□□□□□ -1.1
COL6A3-203ENST00000353578 NBDYA0A0U1RRE5 68 aa8.14□□□□□ -1.11
COL6A3-203ENST00000353578 ITPR3Q14573 2671 aa8.14□□□□□ -1.11
COL6A3-203ENST00000353578 RTL8CO15255 209 aa8.13□□□□□ -1.11
COL6A3-203ENST00000353578 IGLV7-43P04211 117 aa8.12□□□□□ -1.11
COL6A3-203ENST00000353578 FAM168BA1KXE4 195 aa8.12□□□□□ -1.11
COL6A3-203ENST00000353578 LINC00304Q8N9R0 145 aa8.12□□□□□ -1.11
COL6A3-203ENST00000353578 PRR26Q8N8Z3 221 aa8.12□□□□□ -1.11
COL6A3-203ENST00000353578 ROMO1P60602 79 aa8.11□□□□□ -1.11
COL6A3-203ENST00000353578 CYSTM1Q9H1C7 97 aa8.09□□□□□ -1.11
COL6A3-203ENST00000353578 PRAC1Q96KF2 57 aa8.09□□□□□ -1.11
COL6A3-203ENST00000353578 HRES1P13985 223 aa8.08□□□□□ -1.12
COL6A3-203ENST00000353578 OXTP01178 125 aa8.07□□□□□ -1.12
COL6A3-203ENST00000353578 CENPFP49454 3210 aa8.06□□□□□ -1.12
COL6A3-203ENST00000353578 SEC61BP60468 96 aaKnown RBP8.06□□□□□ -1.12
COL6A3-203ENST00000353578 A6NN06 94 aa8.04□□□□□ -1.12
COL6A3-203ENST00000353578 SPINK7P58062 85 aa8.03□□□□□ -1.12
COL6A3-203ENST00000353578 FLNBO75369 2602 aaKnown RBP8.02□□□□□ -1.13
COL6A3-203ENST00000353578 A0A0D9SG42 100 aa8.02□□□□□ -1.13
COL6A3-203ENST00000353578 C19orf73Q9NVV2 129 aa8.02□□□□□ -1.13
COL6A3-203ENST00000353578 SPATA8Q6RVD6 105 aa8.01□□□□□ -1.13
COL6A3-203ENST00000353578 MMP24-AS1A0A0U1RRL7 71 aa8.01□□□□□ -1.13
COL6A3-203ENST00000353578 A0A096LNT2 108 aa8□□□□□ -1.13
COL6A3-203ENST00000353578 COX6B2Q6YFQ2 88 aa8□□□□□ -1.13
COL6A3-203ENST00000353578 Q6ZR54 194 aa8□□□□□ -1.13
COL6A3-203ENST00000353578 RPL37P61927 97 aaKnown RBP7.98□□□□□ -1.13
COL6A3-203ENST00000353578 GIG44P09565 113 aaPredicted RBP7.96□□□□□ -1.13
COL6A3-203ENST00000353578 A0A1W2PPR1 153 aa7.96□□□□□ -1.14
COL6A3-203ENST00000353578 Q8N1X5 172 aa7.95□□□□□ -1.14
COL6A3-203ENST00000353578 SMR3AQ99954 134 aa7.95□□□□□ -1.14
COL6A3-203ENST00000353578 ZCCHC13Q8WW36 166 aaKnown RBP7.95□□□□□ -1.14
COL6A3-203ENST00000353578 LINC00472Q9H8W2 130 aa7.94□□□□□ -1.14
COL6A3-203ENST00000353578 SPRR1BP22528 89 aa7.94□□□□□ -1.14
COL6A3-203ENST00000353578 SPRR1AP35321 89 aa7.94□□□□□ -1.14
COL6A3-203ENST00000353578 MAP1AP78559 2803 aaPredicted RBP7.93□□□□□ -1.14
COL6A3-203ENST00000353578 TEX15Q9BXT5 2789 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms