RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 NBEAL1Q6ZS30 2694 aa14.22□□□□□ -0.13
SHMT1-202ENST00000352886 K7EIL1 84 aa14.22□□□□□ -0.13
SHMT1-202ENST00000352886 CASC10Q5T4H9 136 aa14.22□□□□□ -0.13
SHMT1-202ENST00000352886 PDE6GP18545 87 aa14.21□□□□□ -0.13
SHMT1-202ENST00000352886 USP17L23D6RBM5 183 aa14.21□□□□□ -0.14
SHMT1-202ENST00000352886 DPH3Q96FX2 82 aa14.19□□□□□ -0.14
SHMT1-202ENST00000352886 DNAH1Q9P2D7 4330 aa14.19□□□□□ -0.14
SHMT1-202ENST00000352886 TLX1NBP0CAT3 122 aa14.18□□□□□ -0.14
SHMT1-202ENST00000352886 TMEM258P61165 79 aa14.18□□□□□ -0.14
SHMT1-202ENST00000352886 FAM19A1Q7Z5A9 133 aa14.18□□□□□ -0.14
SHMT1-202ENST00000352886 C7orf33Q8WU49 177 aa14.18□□□□□ -0.14
SHMT1-202ENST00000352886 TRBV7-4A0A0J9YYF1 115 aa14.17□□□□□ -0.14
SHMT1-202ENST00000352886 UPK3BQ9BT76 320 aa14.17□□□□□ -0.14
SHMT1-202ENST00000352886 KCNQ1DNQ9H478 68 aa14.17□□□□□ -0.14
SHMT1-202ENST00000352886 SERP2Q8N6R1 65 aa14.16□□□□□ -0.14
SHMT1-202ENST00000352886 OXTP01178 125 aa14.15□□□□□ -0.14
SHMT1-202ENST00000352886 Q6ZVQ6 151 aa14.15□□□□□ -0.14
SHMT1-202ENST00000352886 RMI2Q96E14 147 aa14.13□□□□□ -0.15
SHMT1-202ENST00000352886 FAM168BA1KXE4 195 aa14.12□□□□□ -0.15
SHMT1-202ENST00000352886 LINC01547P58512 204 aaPredicted RBP14.12□□□□□ -0.15
SHMT1-202ENST00000352886 PLA2G2DQ9UNK4 145 aa14.12□□□□□ -0.15
SHMT1-202ENST00000352886 HAMPP81172 84 aa14.11□□□□□ -0.15
SHMT1-202ENST00000352886 RPL37AP8A6NKH3 93 aa14.1□□□□□ -0.15
SHMT1-202ENST00000352886 C4orf26Q17RF5 130 aa14.06□□□□□ -0.16
SHMT1-202ENST00000352886 IGLV5-37A0A075B6J1 123 aa14.05□□□□□ -0.16
SHMT1-202ENST00000352886 KRTAP7-1Q8IUC3 87 aa14.05□□□□□ -0.16
SHMT1-202ENST00000352886 DEFB105AQ8NG35 78 aa14.05□□□□□ -0.16
SHMT1-202ENST00000352886 IGLV1-50A0A075B6I6 118 aa14.05□□□□□ -0.16
SHMT1-202ENST00000352886 Q5XG85 94 aa14.04□□□□□ -0.16
SHMT1-202ENST00000352886 Q6ZRX8 168 aa14.04□□□□□ -0.16
SHMT1-202ENST00000352886 CXCL6P80162 114 aa14.03□□□□□ -0.16
SHMT1-202ENST00000352886 MGAM2Q2M2H8 2515 aa14.02□□□□□ -0.16
SHMT1-202ENST00000352886 KRTAP4-16G5E9R7 235 aaPredicted RBP14.02□□□□□ -0.16
SHMT1-202ENST00000352886 PRYO14603 147 aa14.02□□□□□ -0.16
SHMT1-202ENST00000352886 Q8N377 158 aa14.02□□□□□ -0.16
SHMT1-202ENST00000352886 HRCT1Q6UXD1 115 aa14.01□□□□□ -0.17
SHMT1-202ENST00000352886 DHRS4-AS1Q9P1J3 65 aa14.01□□□□□ -0.17
SHMT1-202ENST00000352886 Q9BRP9 147 aa14.01□□□□□ -0.17
SHMT1-202ENST00000352886 ETDCA0A1B0GVM5 59 aa14□□□□□ -0.17
SHMT1-202ENST00000352886 SPRR1AP35321 89 aa14□□□□□ -0.17
SHMT1-202ENST00000352886 MRPL55Q7Z7F7 128 aaKnown RBP13.99□□□□□ -0.17
SHMT1-202ENST00000352886 SCXQ7RTU7 201 aa13.98□□□□□ -0.17
SHMT1-202ENST00000352886 LYSTQ99698 3801 aa13.98□□□□□ -0.17
SHMT1-202ENST00000352886 KRTAP1-5Q9BYS1 174 aa13.98□□□□□ -0.17
SHMT1-202ENST00000352886 COL7A1Q02388 2944 aa13.97□□□□□ -0.17
SHMT1-202ENST00000352886 DNAH10Q8IVF4 4471 aa13.96□□□□□ -0.18
SHMT1-202ENST00000352886 STAB2Q8WWQ8 2551 aa13.94□□□□□ -0.18
SHMT1-202ENST00000352886 IGLV5-48A0A075B6I7 105 aa13.93□□□□□ -0.18
SHMT1-202ENST00000352886 ST20-AS1Q8NBB2 130 aa13.93□□□□□ -0.18
SHMT1-202ENST00000352886 DNAH9Q9NYC9 4486 aa13.93□□□□□ -0.18
SHMT1-202ENST00000352886 C3orf84H3BNL1 204 aa13.9□□□□□ -0.18
SHMT1-202ENST00000352886 PSCAO43653 123 aa13.9□□□□□ -0.18
SHMT1-202ENST00000352886 UBE2DNLQ8IWF7 75 aa13.9□□□□□ -0.18
SHMT1-202ENST00000352886 ERC2-IT1O76042 136 aa13.89□□□□□ -0.19
SHMT1-202ENST00000352886 UBE2BP63146 152 aa13.88□□□□□ -0.19
SHMT1-202ENST00000352886 NREPQ16612 68 aa13.88□□□□□ -0.19
SHMT1-202ENST00000352886 REG3GQ6UW15 175 aa13.88□□□□□ -0.19
SHMT1-202ENST00000352886 A0A096LNI7 61 aa13.88□□□□□ -0.19
SHMT1-202ENST00000352886 BCE1O60756 84 aa13.88□□□□□ -0.19
SHMT1-202ENST00000352886 APLNQ9ULZ1 77 aa13.87□□□□□ -0.19
SHMT1-202ENST00000352886 IGKV2-24A0A0C4DH68 120 aa13.86□□□□□ -0.19
SHMT1-202ENST00000352886 CNBPP62633 177 aaKnown RBP13.85□□□□□ -0.19
SHMT1-202ENST00000352886 C20orf197Q8N268 126 aa13.85□□□□□ -0.19
SHMT1-202ENST00000352886 C16orf90A8MZG2 172 aa13.85□□□□□ -0.19
SHMT1-202ENST00000352886 TNP2Q05952 138 aa13.85□□□□□ -0.19
SHMT1-202ENST00000352886 TRAV7A0A075B6U4 112 aa13.84□□□□□ -0.19
SHMT1-202ENST00000352886 FAM236DA0A1B0GTK5 79 aa13.83□□□□□ -0.2
SHMT1-202ENST00000352886 FAM236CP0DP71 79 aa13.83□□□□□ -0.2
SHMT1-202ENST00000352886 FUSP35637 526 aaKnown RBP eCLIP13.83□□□□□ -0.2
SHMT1-202ENST00000352886 C1orf137Q5JT78 98 aa13.83□□□□□ -0.2
SHMT1-202ENST00000352886 Q8N9L7 120 aa13.83□□□□□ -0.2
SHMT1-202ENST00000352886 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.82□□□□□ -0.2
SHMT1-202ENST00000352886 A0A1W2PNM2 257 aa13.82□□□□□ -0.2
SHMT1-202ENST00000352886 A0A1W2PNN7 141 aa13.81□□□□□ -0.2
SHMT1-202ENST00000352886 BPY2O14599 106 aa13.79□□□□□ -0.2
SHMT1-202ENST00000352886 EPM2AB3EWF7 344 aa13.79□□□□□ -0.2
SHMT1-202ENST00000352886 IGKV4-1P06312 121 aa13.78□□□□□ -0.2
SHMT1-202ENST00000352886 MDFIQ99750 246 aa13.78□□□□□ -0.2
SHMT1-202ENST00000352886 B9D2Q9BPU9 175 aa13.78□□□□□ -0.2
SHMT1-202ENST00000352886 A0A1B0GW54 56 aa13.76□□□□□ -0.21
SHMT1-202ENST00000352886 H7BZZ5 65 aa13.76□□□□□ -0.21
SHMT1-202ENST00000352886 PRLHP81277 87 aa13.76□□□□□ -0.21
SHMT1-202ENST00000352886 Q8NBF4 154 aa13.76□□□□□ -0.21
SHMT1-202ENST00000352886 SERP1Q9Y6X1 66 aa13.76□□□□□ -0.21
SHMT1-202ENST00000352886 DYNC2H1Q8NCM8 4307 aaKnown RBP13.76□□□□□ -0.21
SHMT1-202ENST00000352886 C14orf177Q52M58 125 aa13.75□□□□□ -0.21
SHMT1-202ENST00000352886 CSMD3Q7Z407 3707 aa13.75□□□□□ -0.21
SHMT1-202ENST00000352886 DNAH7Q8WXX0 4024 aa13.75□□□□□ -0.21
SHMT1-202ENST00000352886 SMIM29Q86T20 159 aa13.74□□□□□ -0.21
SHMT1-202ENST00000352886 TENM2Q9NT68 2774 aa13.73□□□□□ -0.21
SHMT1-202ENST00000352886 CHTF8P0CG12 524 aa13.72□□□□□ -0.21
SHMT1-202ENST00000352886 SPRR4Q96PI1 79 aa13.72□□□□□ -0.21
SHMT1-202ENST00000352886 LINC00336Q6ZUF6 198 aa13.71□□□□□ -0.21
SHMT1-202ENST00000352886 HIGD2AQ9BW72 106 aa13.7□□□□□ -0.22
SHMT1-202ENST00000352886 PLECQ15149 4684 aaKnown RBP13.69□□□□□ -0.22
SHMT1-202ENST00000352886 LINC00476Q8WZB0 136 aa13.69□□□□□ -0.22
SHMT1-202ENST00000352886 PRO0628Q9UI54 55 aa13.69□□□□□ -0.22
SHMT1-202ENST00000352886 F8WEM9 126 aa13.69□□□□□ -0.22
SHMT1-202ENST00000352886 KLKP1Q107X0 134 aa13.68□□□□□ -0.22
SHMT1-202ENST00000352886 PHF5AQ7RTV0 110 aaKnown RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms