RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 LINC00336Q6ZUF6 198 aa14.79□□□□□ -0.04
TRIM28-202ENST00000341753 FBN1P35555 2871 aaKnown RBP14.78□□□□□ -0.04
TRIM28-202ENST00000341753 TRBV7-6A0A0J9YX20 115 aa14.78□□□□□ -0.04
TRIM28-202ENST00000341753 DEFB105AQ8NG35 78 aa14.78□□□□□ -0.04
TRIM28-202ENST00000341753 LINC00528Q8N1L1 170 aa14.77□□□□□ -0.04
TRIM28-202ENST00000341753 TMEM254Q8TBM7 123 aa14.77□□□□□ -0.05
TRIM28-202ENST00000341753 M0R378 163 aa14.76□□□□□ -0.05
TRIM28-202ENST00000341753 TENM3Q9P273 2699 aa14.74□□□□□ -0.05
TRIM28-202ENST00000341753 IGKV4-1P06312 121 aa14.74□□□□□ -0.05
TRIM28-202ENST00000341753 SMIM26A0A096LP01 95 aa14.72□□□□□ -0.05
TRIM28-202ENST00000341753 EGFEM1PQ0D2K5 195 aa14.71□□□□□ -0.06
TRIM28-202ENST00000341753 Q6ZRP5 223 aa14.71□□□□□ -0.06
TRIM28-202ENST00000341753 C15orf56Q8N910 161 aa14.71□□□□□ -0.06
TRIM28-202ENST00000341753 KRTAP10-11P60412 298 aa14.7□□□□□ -0.06
TRIM28-202ENST00000341753 NDUFC1O43677 76 aa14.69□□□□□ -0.06
TRIM28-202ENST00000341753 MAST4O15021 2626 aa14.69□□□□□ -0.06
TRIM28-202ENST00000341753 CMYA5Q8N3K9 4069 aa14.68□□□□□ -0.06
TRIM28-202ENST00000341753 KRTAP26-1Q6PEX3 210 aa14.68□□□□□ -0.06
TRIM28-202ENST00000341753 NOTCH1P46531 2555 aa14.67□□□□□ -0.06
TRIM28-202ENST00000341753 FAM229BQ4G0N7 80 aa14.67□□□□□ -0.06
TRIM28-202ENST00000341753 OCR1Q9BZK8 76 aa14.65□□□□□ -0.07
TRIM28-202ENST00000341753 KPRPQ5T749 579 aaPredicted RBP14.64□□□□□ -0.07
TRIM28-202ENST00000341753 HIGD2AQ9BW72 106 aa14.64□□□□□ -0.07
TRIM28-202ENST00000341753 SERTAD4-AS1Q5TG53 156 aa14.62□□□□□ -0.07
TRIM28-202ENST00000341753 Q8N377 158 aa14.62□□□□□ -0.07
TRIM28-202ENST00000341753 MPLKIPQ8TAP9 179 aa14.62□□□□□ -0.07
TRIM28-202ENST00000341753 PRYO14603 147 aa14.62□□□□□ -0.07
TRIM28-202ENST00000341753 PRO0628Q9UI54 55 aa14.61□□□□□ -0.07
TRIM28-202ENST00000341753 Q6ZTC4 211 aa14.6□□□□□ -0.07
TRIM28-202ENST00000341753 IGKV2D-24A0A075B6R9 120 aa14.6□□□□□ -0.07
TRIM28-202ENST00000341753 A0A0U1RQV1 116 aa14.6□□□□□ -0.07
TRIM28-202ENST00000341753 MRAPQ8TCY5 172 aa14.6□□□□□ -0.07
TRIM28-202ENST00000341753 KRTAP24-1Q3LI83 254 aa14.59□□□□□ -0.07
TRIM28-202ENST00000341753 FAM30AQ9NZY2 134 aa14.59□□□□□ -0.07
TRIM28-202ENST00000341753 NKAPP1Q8N9T2 125 aa14.59□□□□□ -0.07
TRIM28-202ENST00000341753 RPL37AP8A6NKH3 93 aa14.58□□□□□ -0.08
TRIM28-202ENST00000341753 C7orf33Q8WU49 177 aa14.58□□□□□ -0.08
TRIM28-202ENST00000341753 C1orf43Q9BWL3 253 aa14.57□□□□□ -0.08
TRIM28-202ENST00000341753 ATP5EP56381 51 aaPredicted RBP14.57□□□□□ -0.08
TRIM28-202ENST00000341753 SMIM29Q86T20 159 aa14.57□□□□□ -0.08
TRIM28-202ENST00000341753 ERC2-IT1O76042 136 aa14.57□□□□□ -0.08
TRIM28-202ENST00000341753 FUSP35637 526 aaKnown RBP eCLIP14.56□□□□□ -0.083e-7■■□□□ 14.5
TRIM28-202ENST00000341753 ESRGQ1W209 222 aa14.56□□□□□ -0.08
TRIM28-202ENST00000341753 SYCNQ0VAF6 134 aa14.55□□□□□ -0.08
TRIM28-202ENST00000341753 KCNQ1DNQ9H478 68 aa14.53□□□□□ -0.08
TRIM28-202ENST00000341753 ST20-AS1Q8NBB2 130 aa14.52□□□□□ -0.08
TRIM28-202ENST00000341753 BRK1Q8WUW1 75 aa14.52□□□□□ -0.08
TRIM28-202ENST00000341753 A0A1W2PNM2 257 aa14.52□□□□□ -0.09
TRIM28-202ENST00000341753 FAM168BA1KXE4 195 aa14.52□□□□□ -0.09
TRIM28-202ENST00000341753 PKIGQ9Y2B9 76 aa14.52□□□□□ -0.09
TRIM28-202ENST00000341753 COL6A5A8TX70 2615 aa14.52□□□□□ -0.09
TRIM28-202ENST00000341753 PRB2P02812 416 aaPredicted RBP14.51□□□□□ -0.09
TRIM28-202ENST00000341753 IGLV5-48A0A075B6I7 105 aa14.5□□□□□ -0.09
TRIM28-202ENST00000341753 Q9BRP9 147 aa14.49□□□□□ -0.09
TRIM28-202ENST00000341753 C1orf137Q5JT78 98 aa14.46□□□□□ -0.09
TRIM28-202ENST00000341753 NBEAL1Q6ZS30 2694 aa14.46□□□□□ -0.09
TRIM28-202ENST00000341753 LRCOL1A6NCL2 159 aa14.46□□□□□ -0.09
TRIM28-202ENST00000341753 Q6ZRX8 168 aa14.44□□□□□ -0.1
TRIM28-202ENST00000341753 A0A0G2JQZ4 141 aa14.43□□□□□ -0.1
TRIM28-202ENST00000341753 A0A1W2PNN7 141 aa14.43□□□□□ -0.1
TRIM28-202ENST00000341753 DNAH3Q8TD57 4116 aa14.42□□□□□ -0.1
TRIM28-202ENST00000341753 ETDCA0A1B0GVM5 59 aa14.42□□□□□ -0.1
TRIM28-202ENST00000341753 K7EQZ3 153 aa14.4□□□□□ -0.1
TRIM28-202ENST00000341753 DHRS4-AS1Q9P1J3 65 aa14.4□□□□□ -0.1
TRIM28-202ENST00000341753 DEFB131BA0A096LNP1 70 aa14.39□□□□□ -0.11
TRIM28-202ENST00000341753 CASC10Q5T4H9 136 aa14.39□□□□□ -0.11
TRIM28-202ENST00000341753 BAHCC1Q9P281 2608 aa14.39□□□□□ -0.11
TRIM28-202ENST00000341753 H3BNG1 76 aa14.38□□□□□ -0.11
TRIM28-202ENST00000341753 DSCR10P59022 87 aa14.38□□□□□ -0.11
TRIM28-202ENST00000341753 Q8NBF4 154 aa14.38□□□□□ -0.11
TRIM28-202ENST00000341753 TNP2Q05952 138 aa14.38□□□□□ -0.11
TRIM28-202ENST00000341753 LINC01556Q5JQF7 62 aa14.38□□□□□ -0.11
TRIM28-202ENST00000341753 KRTAP4-16G5E9R7 235 aaPredicted RBP14.37□□□□□ -0.11
TRIM28-202ENST00000341753 C11orf45Q8TAV5 145 aa14.37□□□□□ -0.11
TRIM28-202ENST00000341753 IGLV1-50A0A075B6I6 118 aa14.36□□□□□ -0.11
TRIM28-202ENST00000341753 KRTAP7-1Q8IUC3 87 aa14.36□□□□□ -0.11
TRIM28-202ENST00000341753 PRR4Q16378 134 aa14.35□□□□□ -0.11
TRIM28-202ENST00000341753 DEFB116Q30KQ4 102 aa14.35□□□□□ -0.11
TRIM28-202ENST00000341753 UBE2BP63146 152 aa14.34□□□□□ -0.11
TRIM28-202ENST00000341753 hDV103S1A0JD37 113 aa14.3□□□□□ -0.12
TRIM28-202ENST00000341753 HUWE1Q7Z6Z7 4374 aaKnown RBP14.3□□□□□ -0.12
TRIM28-202ENST00000341753 MGAM2Q2M2H8 2515 aa14.3□□□□□ -0.12
TRIM28-202ENST00000341753 SPRR1AP35321 89 aa14.29□□□□□ -0.12
TRIM28-202ENST00000341753 C1orf64Q8NEQ6 169 aa14.29□□□□□ -0.12
TRIM28-202ENST00000341753 LCE6AA0A183 80 aa14.28□□□□□ -0.12
TRIM28-202ENST00000341753 SPRR4Q96PI1 79 aa14.28□□□□□ -0.12
TRIM28-202ENST00000341753 IGLV2-33A0A075B6J2 118 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-202ENST00000341753 F8WDY8 70 aa14.28□□□□□ -0.12
TRIM28-202ENST00000341753 TLX1NBP0CAT3 122 aa14.26□□□□□ -0.13
TRIM28-202ENST00000341753 MRPL55Q7Z7F7 128 aaKnown RBP14.26□□□□□ -0.13
TRIM28-202ENST00000341753 LINC00476Q8WZB0 136 aa14.25□□□□□ -0.13
TRIM28-202ENST00000341753 ZCCHC13Q8WW36 166 aaKnown RBP14.25□□□□□ -0.13
TRIM28-202ENST00000341753 PLA2G2DQ9UNK4 145 aa14.25□□□□□ -0.13
TRIM28-202ENST00000341753 LYSTQ99698 3801 aa14.24□□□□□ -0.13
TRIM28-202ENST00000341753 A0A1B0GW54 56 aa14.24□□□□□ -0.13
TRIM28-202ENST00000341753 PSCAO43653 123 aa14.23□□□□□ -0.13
TRIM28-202ENST00000341753 WFDC13Q8IUB5 93 aa14.23□□□□□ -0.13
TRIM28-202ENST00000341753 HCG22E2RYF7 251 aa14.22□□□□□ -0.13
TRIM28-202ENST00000341753 DNAH10OSP0CZ25 163 aa14.22□□□□□ -0.13
TRIM28-202ENST00000341753 IGLV5-37A0A075B6J1 123 aa14.21□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms