RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 C7orf33Q8WU49 177 aa11.38□□□□□ -0.59
COL9A1-201ENST00000320755 TRBV7-4A0A0J9YYF1 115 aa11.37□□□□□ -0.59
COL9A1-201ENST00000320755 LOC107984640A0A0U1RRK4 108 aa11.37□□□□□ -0.59
COL9A1-201ENST00000320755 LINC00588Q9Y4M8 146 aa11.37□□□□□ -0.59
COL9A1-201ENST00000320755 TRBV7-6A0A0J9YX20 115 aa11.37□□□□□ -0.59
COL9A1-201ENST00000320755 H3BQ85 93 aa11.36□□□□□ -0.59
COL9A1-201ENST00000320755 DNAH10OSP0CZ25 163 aa11.36□□□□□ -0.59
COL9A1-201ENST00000320755 C20orf197Q8N268 126 aa11.34□□□□□ -0.59
COL9A1-201ENST00000320755 STAB2Q8WWQ8 2551 aa11.34□□□□□ -0.59
COL9A1-201ENST00000320755 TRAV10A0A0B4J240 114 aa11.34□□□□□ -0.59
COL9A1-201ENST00000320755 CMYA5Q8N3K9 4069 aa11.33□□□□□ -0.6
COL9A1-201ENST00000320755 C3orf84H3BNL1 204 aa11.31□□□□□ -0.6
COL9A1-201ENST00000320755 Q8N9L7 120 aa11.31□□□□□ -0.6
COL9A1-201ENST00000320755 KCNQ1DNQ9H478 68 aa11.3□□□□□ -0.6
COL9A1-201ENST00000320755 FAM19A5Q7Z5A7 132 aaPredicted RBP11.29□□□□□ -0.6
COL9A1-201ENST00000320755 Q8N377 158 aa11.27□□□□□ -0.6
COL9A1-201ENST00000320755 CXCL6P80162 114 aa11.27□□□□□ -0.61
COL9A1-201ENST00000320755 ETDCA0A1B0GVM5 59 aa11.26□□□□□ -0.61
COL9A1-201ENST00000320755 TENM2Q9NT68 2774 aa11.26□□□□□ -0.61
COL9A1-201ENST00000320755 ST20-AS1Q8NBB2 130 aa11.26□□□□□ -0.61
COL9A1-201ENST00000320755 F8WDY8 70 aa11.25□□□□□ -0.61
COL9A1-201ENST00000320755 NREPQ16612 68 aa11.24□□□□□ -0.61
COL9A1-201ENST00000320755 TMEM258P61165 79 aa11.24□□□□□ -0.61
COL9A1-201ENST00000320755 Q9BRP9 147 aa11.24□□□□□ -0.61
COL9A1-201ENST00000320755 J3KT08 172 aa11.24□□□□□ -0.61
COL9A1-201ENST00000320755 SNURFQ9Y675 71 aa11.24□□□□□ -0.61
COL9A1-201ENST00000320755 K7EIL1 84 aa11.23□□□□□ -0.61
COL9A1-201ENST00000320755 KRTAP7-1Q8IUC3 87 aa11.23□□□□□ -0.61
COL9A1-201ENST00000320755 Q6ZRX8 168 aa11.23□□□□□ -0.61
COL9A1-201ENST00000320755 IGLV1-50A0A075B6I6 118 aa11.22□□□□□ -0.61
COL9A1-201ENST00000320755 TRAV7A0A075B6U4 112 aa11.21□□□□□ -0.61
COL9A1-201ENST00000320755 TLX1NBP0CAT3 122 aa11.21□□□□□ -0.61
COL9A1-201ENST00000320755 DPH3Q96FX2 82 aa11.21□□□□□ -0.61
COL9A1-201ENST00000320755 UBE2BP63146 152 aa11.21□□□□□ -0.62
COL9A1-201ENST00000320755 TM2D3Q9BRN9 247 aa11.2□□□□□ -0.62
COL9A1-201ENST00000320755 IGKV2-24A0A0C4DH68 120 aa11.2□□□□□ -0.62
COL9A1-201ENST00000320755 BPY2O14599 106 aa11.2□□□□□ -0.62
COL9A1-201ENST00000320755 ERC2-IT1O76042 136 aa11.2□□□□□ -0.62
COL9A1-201ENST00000320755 RMI2Q96E14 147 aa11.2□□□□□ -0.62
COL9A1-201ENST00000320755 MRPL55Q7Z7F7 128 aaKnown RBP11.19□□□□□ -0.62
COL9A1-201ENST00000320755 DHRS4-AS1Q9P1J3 65 aa11.19□□□□□ -0.62
COL9A1-201ENST00000320755 COL7A1Q02388 2944 aa11.17□□□□□ -0.62
COL9A1-201ENST00000320755 KRTAP4-16G5E9R7 235 aaPredicted RBP11.16□□□□□ -0.62
COL9A1-201ENST00000320755 PRYO14603 147 aa11.16□□□□□ -0.62
COL9A1-201ENST00000320755 DNAH3Q8TD57 4116 aa11.16□□□□□ -0.62
COL9A1-201ENST00000320755 HUWE1Q7Z6Z7 4374 aaKnown RBP11.16□□□□□ -0.62
COL9A1-201ENST00000320755 PLA2G2DQ9UNK4 145 aa11.16□□□□□ -0.62
COL9A1-201ENST00000320755 CSMD3Q7Z407 3707 aa11.15□□□□□ -0.62
COL9A1-201ENST00000320755 LYSTQ99698 3801 aa11.15□□□□□ -0.63
COL9A1-201ENST00000320755 FUSP35637 526 aaKnown RBP eCLIP11.15□□□□□ -0.63
COL9A1-201ENST00000320755 C1orf137Q5JT78 98 aa11.15□□□□□ -0.63
COL9A1-201ENST00000320755 A0A0G2JQZ4 141 aa11.14□□□□□ -0.63
COL9A1-201ENST00000320755 A0A1W2PNN7 141 aa11.14□□□□□ -0.63
COL9A1-201ENST00000320755 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.14□□□□□ -0.63
COL9A1-201ENST00000320755 KRTAP1-5Q9BYS1 174 aa11.14□□□□□ -0.63
COL9A1-201ENST00000320755 IGLV5-48A0A075B6I7 105 aa11.13□□□□□ -0.63
COL9A1-201ENST00000320755 A0A1W2PNM2 257 aa11.13□□□□□ -0.63
COL9A1-201ENST00000320755 PSCAO43653 123 aa11.13□□□□□ -0.63
COL9A1-201ENST00000320755 OXTP01178 125 aa11.13□□□□□ -0.63
COL9A1-201ENST00000320755 SRRM2Q9UQ35 2752 aaKnown RBP11.13□□□□□ -0.63
COL9A1-201ENST00000320755 IGKV4-1P06312 121 aa11.12□□□□□ -0.63
COL9A1-201ENST00000320755 SPRR1AP35321 89 aa11.12□□□□□ -0.63
COL9A1-201ENST00000320755 IGLV5-37A0A075B6J1 123 aa11.11□□□□□ -0.63
COL9A1-201ENST00000320755 DNAH10Q8IVF4 4471 aa11.11□□□□□ -0.63
COL9A1-201ENST00000320755 RPS28P62857 69 aaKnown RBP11.11□□□□□ -0.63
COL9A1-201ENST00000320755 REG3GQ6UW15 175 aa11.11□□□□□ -0.63
COL9A1-201ENST00000320755 H7BZZ5 65 aa11.1□□□□□ -0.63
COL9A1-201ENST00000320755 BCE1O60756 84 aa11.1□□□□□ -0.63
COL9A1-201ENST00000320755 A0A096LNI7 61 aa11.1□□□□□ -0.63
COL9A1-201ENST00000320755 PRLHP81277 87 aa11.1□□□□□ -0.63
COL9A1-201ENST00000320755 UBE2DNLQ8IWF7 75 aa11.1□□□□□ -0.63
COL9A1-201ENST00000320755 FAM236DA0A1B0GTK5 79 aa11.08□□□□□ -0.64
COL9A1-201ENST00000320755 FAM236CP0DP71 79 aa11.08□□□□□ -0.64
COL9A1-201ENST00000320755 F8WEM9 126 aa11.08□□□□□ -0.64
COL9A1-201ENST00000320755 HIGD2AQ9BW72 106 aa11.07□□□□□ -0.64
COL9A1-201ENST00000320755 KLKP1Q107X0 134 aa11.06□□□□□ -0.64
COL9A1-201ENST00000320755 DNAH1Q9P2D7 4330 aa11.05□□□□□ -0.64
COL9A1-201ENST00000320755 CHTF8P0CG12 524 aa11.05□□□□□ -0.64
COL9A1-201ENST00000320755 TNP2Q05952 138 aa11.05□□□□□ -0.64
COL9A1-201ENST00000320755 Q8NBF4 154 aa11.04□□□□□ -0.64
COL9A1-201ENST00000320755 TMEM254Q8TBM7 123 aa11.02□□□□□ -0.65
COL9A1-201ENST00000320755 DEFB116Q30KQ4 102 aa11.02□□□□□ -0.65
COL9A1-201ENST00000320755 LINC00476Q8WZB0 136 aa11.01□□□□□ -0.65
COL9A1-201ENST00000320755 C16orf90A8MZG2 172 aa11□□□□□ -0.65
COL9A1-201ENST00000320755 FAM30AQ9NZY2 134 aa11□□□□□ -0.65
COL9A1-201ENST00000320755 SMIM29Q86T20 159 aa11□□□□□ -0.65
COL9A1-201ENST00000320755 PHF5AQ7RTV0 110 aaKnown RBP10.98□□□□□ -0.65
COL9A1-201ENST00000320755 OCR1Q9BZK8 76 aa10.98□□□□□ -0.65
COL9A1-201ENST00000320755 DNAH9Q9NYC9 4486 aa10.98□□□□□ -0.65
COL9A1-201ENST00000320755 C4orf26Q17RF5 130 aa10.97□□□□□ -0.65
COL9A1-201ENST00000320755 KRTAP11-1Q8IUC1 163 aa10.96□□□□□ -0.66
COL9A1-201ENST00000320755 K7EQZ3 153 aa10.95□□□□□ -0.66
COL9A1-201ENST00000320755 SPRR4Q96PI1 79 aa10.95□□□□□ -0.66
COL9A1-201ENST00000320755 IGFL1Q6UW32 110 aa10.95□□□□□ -0.66
COL9A1-201ENST00000320755 APLNQ9ULZ1 77 aa10.95□□□□□ -0.66
COL9A1-201ENST00000320755 DSCR10P59022 87 aa10.94□□□□□ -0.66
COL9A1-201ENST00000320755 CNBPP62633 177 aaKnown RBP10.94□□□□□ -0.66
COL9A1-201ENST00000320755 A0A087WSZ3 146 aa10.92□□□□□ -0.66
COL9A1-201ENST00000320755 UBE2AP49459 152 aa10.92□□□□□ -0.66
COL9A1-201ENST00000320755 SERP1Q9Y6X1 66 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms