RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 ATP5EP56381 51 aaPredicted RBP12.47□□□□□ -0.41
RTN4-201ENST00000317610 IGLV5-48A0A075B6I7 105 aa12.46□□□□□ -0.41
RTN4-201ENST00000317610 Q8N377 158 aa12.46□□□□□ -0.41
RTN4-201ENST00000317610 FASNP49327 2511 aaKnown RBP12.46□□□□□ -0.41
RTN4-201ENST00000317610 Q8N9L7 120 aa12.46□□□□□ -0.41
RTN4-201ENST00000317610 TMEM254Q8TBM7 123 aa12.46□□□□□ -0.41
RTN4-201ENST00000317610 RETNQ9HD89 108 aa12.46□□□□□ -0.41
RTN4-201ENST00000317610 C7orf33Q8WU49 177 aa12.45□□□□□ -0.42
RTN4-201ENST00000317610 SERTAD4-AS1Q5TG53 156 aa12.44□□□□□ -0.42
RTN4-201ENST00000317610 NKAPP1Q8N9T2 125 aa12.44□□□□□ -0.42
RTN4-201ENST00000317610 OCR1Q9BZK8 76 aa12.44□□□□□ -0.42
RTN4-201ENST00000317610 IGKV2D-24A0A075B6R9 120 aa12.44□□□□□ -0.42
RTN4-201ENST00000317610 PLA2G2DQ9UNK4 145 aa12.43□□□□□ -0.42
RTN4-201ENST00000317610 SMIM26A0A096LP01 95 aa12.42□□□□□ -0.42
RTN4-201ENST00000317610 A0A1B0GW54 56 aa12.42□□□□□ -0.42
RTN4-201ENST00000317610 C3orf84H3BNL1 204 aa12.41□□□□□ -0.42
RTN4-201ENST00000317610 TLX1NBP0CAT3 122 aa12.41□□□□□ -0.42
RTN4-201ENST00000317610 DEFB105AQ8NG35 78 aa12.4□□□□□ -0.42
RTN4-201ENST00000317610 DHRS4-AS1Q9P1J3 65 aa12.4□□□□□ -0.42
RTN4-201ENST00000317610 A0A0U1RQV1 116 aa12.39□□□□□ -0.43
RTN4-201ENST00000317610 TRRAPQ9Y4A5 3859 aa12.39□□□□□ -0.43
RTN4-201ENST00000317610 KRTAP4-16G5E9R7 235 aaPredicted RBP12.39□□□□□ -0.43
RTN4-201ENST00000317610 NSD1Q96L73 2696 aaPredicted RBP12.39□□□□□ -0.43
RTN4-201ENST00000317610 Q6ZRX8 168 aa12.38□□□□□ -0.43
RTN4-201ENST00000317610 FP248Q71RG6 208 aaPredicted RBP12.38□□□□□ -0.43
RTN4-201ENST00000317610 HELZ2Q9BYK8 2649 aaKnown RBP12.38□□□□□ -0.43
RTN4-201ENST00000317610 IGLV5-37A0A075B6J1 123 aa12.37□□□□□ -0.43
RTN4-201ENST00000317610 TNP2Q05952 138 aa12.37□□□□□ -0.43
RTN4-201ENST00000317610 SPRR1AP35321 89 aa12.37□□□□□ -0.43
RTN4-201ENST00000317610 PRYO14603 147 aa12.36□□□□□ -0.43
RTN4-201ENST00000317610 DNAH10OSP0CZ25 163 aa12.36□□□□□ -0.43
RTN4-201ENST00000317610 FUSP35637 526 aaKnown RBP eCLIP12.36□□□□□ -0.431e-8■□□□□ 8.2
RTN4-201ENST00000317610 KRTAP10-11P60412 298 aa12.36□□□□□ -0.43
RTN4-201ENST00000317610 Q9BRP9 147 aa12.36□□□□□ -0.43
RTN4-201ENST00000317610 TEP1Q99973 2627 aaKnown RBP12.35□□□□□ -0.43
RTN4-201ENST00000317610 A0A1W2PNM2 257 aa12.35□□□□□ -0.43
RTN4-201ENST00000317610 IGLV1-50A0A075B6I6 118 aa12.34□□□□□ -0.43
RTN4-201ENST00000317610 ATRQ13535 2644 aa12.34□□□□□ -0.43
RTN4-201ENST00000317610 DEFB131BA0A096LNP1 70 aa12.33□□□□□ -0.44
RTN4-201ENST00000317610 OXLD1Q5BKU9 147 aa12.33□□□□□ -0.44
RTN4-201ENST00000317610 OTOGQ6ZRI0 2925 aa12.32□□□□□ -0.44
RTN4-201ENST00000317610 Q8NBF4 154 aa12.31□□□□□ -0.44
RTN4-201ENST00000317610 RPL37AP8A6NKH3 93 aa12.3□□□□□ -0.44
RTN4-201ENST00000317610 C1orf137Q5JT78 98 aa12.3□□□□□ -0.44
RTN4-201ENST00000317610 SPRR4Q96PI1 79 aa12.29□□□□□ -0.44
RTN4-201ENST00000317610 ETDCA0A1B0GVM5 59 aa12.29□□□□□ -0.44
RTN4-201ENST00000317610 FAM168BA1KXE4 195 aa12.29□□□□□ -0.44
RTN4-201ENST00000317610 KRTAP7-1Q8IUC3 87 aa12.29□□□□□ -0.44
RTN4-201ENST00000317610 MRAPQ8TCY5 172 aa12.29□□□□□ -0.44
RTN4-201ENST00000317610 LCE6AA0A183 80 aa12.28□□□□□ -0.44
RTN4-201ENST00000317610 C11orf45Q8TAV5 145 aa12.28□□□□□ -0.44
RTN4-201ENST00000317610 ST20-AS1Q8NBB2 130 aa12.28□□□□□ -0.44
RTN4-201ENST00000317610 PKD1L1Q8TDX9 2849 aa12.27□□□□□ -0.45
RTN4-201ENST00000317610 SMIM29Q86T20 159 aa12.27□□□□□ -0.45
RTN4-201ENST00000317610 LINC00474Q9P2X8 69 aa12.27□□□□□ -0.45
RTN4-201ENST00000317610 LINC00336Q6ZUF6 198 aa12.26□□□□□ -0.45
RTN4-201ENST00000317610 HIGD2AQ9BW72 106 aa12.26□□□□□ -0.45
RTN4-201ENST00000317610 DNAH1Q9P2D7 4330 aa12.25□□□□□ -0.45
RTN4-201ENST00000317610 CASC10Q5T4H9 136 aa12.23□□□□□ -0.45
RTN4-201ENST00000317610 DSCR10P59022 87 aa12.22□□□□□ -0.45
RTN4-201ENST00000317610 FAM30AQ9NZY2 134 aa12.22□□□□□ -0.45
RTN4-201ENST00000317610 PRO0628Q9UI54 55 aa12.22□□□□□ -0.45
RTN4-201ENST00000317610 MRPL55Q7Z7F7 128 aaKnown RBP12.22□□□□□ -0.45
RTN4-201ENST00000317610 FAM229BQ4G0N7 80 aa12.21□□□□□ -0.46
RTN4-201ENST00000317610 TENM3Q9P273 2699 aa12.2□□□□□ -0.46
RTN4-201ENST00000317610 LINC00588Q9Y4M8 146 aa12.2□□□□□ -0.46
RTN4-201ENST00000317610 ANK2Q01484 3957 aa12.17□□□□□ -0.46
RTN4-201ENST00000317610 UBE2BP63146 152 aa12.16□□□□□ -0.46
RTN4-201ENST00000317610 ZCCHC13Q8WW36 166 aaKnown RBP12.16□□□□□ -0.46
RTN4-201ENST00000317610 HECTD1Q9ULT8 2610 aa12.16□□□□□ -0.46
RTN4-201ENST00000317610 K7EQZ3 153 aa12.16□□□□□ -0.46
RTN4-201ENST00000317610 REG3GQ6UW15 175 aa12.15□□□□□ -0.46
RTN4-201ENST00000317610 CMYA5Q8N3K9 4069 aa12.14□□□□□ -0.47
RTN4-201ENST00000317610 LINC00476Q8WZB0 136 aa12.14□□□□□ -0.47
RTN4-201ENST00000317610 BAHCC1Q9P281 2608 aa12.12□□□□□ -0.47
RTN4-201ENST00000317610 DNAH3Q8TD57 4116 aa12.12□□□□□ -0.47
RTN4-201ENST00000317610 HCG22E2RYF7 251 aa12.09□□□□□ -0.47
RTN4-201ENST00000317610 hDV103S1A0JD37 113 aa12.08□□□□□ -0.48
RTN4-201ENST00000317610 IGFL1Q6UW32 110 aa12.08□□□□□ -0.48
RTN4-201ENST00000317610 IGLV8-61A0A075B6I0 122 aa12.08□□□□□ -0.48
RTN4-201ENST00000317610 MPLKIPQ8TAP9 179 aa12.07□□□□□ -0.48
RTN4-201ENST00000317610 PSCAO43653 123 aa12.06□□□□□ -0.48
RTN4-201ENST00000317610 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.06□□□□□ -0.48
RTN4-201ENST00000317610 A0A0G2JQZ4 141 aa12.03□□□□□ -0.48
RTN4-201ENST00000317610 A0A1W2PNN7 141 aa12.03□□□□□ -0.48
RTN4-201ENST00000317610 FLNBO75369 2602 aaKnown RBP12.02□□□□□ -0.49
RTN4-201ENST00000317610 KRTAP24-1Q3LI83 254 aa12□□□□□ -0.49
RTN4-201ENST00000317610 C1orf64Q8NEQ6 169 aa12□□□□□ -0.49
RTN4-201ENST00000317610 C16orf90A8MZG2 172 aa12□□□□□ -0.49
RTN4-201ENST00000317610 CYP4F30PQ9H0H9 118 aa12□□□□□ -0.49
RTN4-201ENST00000317610 A0A096LNI7 61 aa11.99□□□□□ -0.49
RTN4-201ENST00000317610 PRLHP81277 87 aa11.99□□□□□ -0.49
RTN4-201ENST00000317610 BRK1Q8WUW1 75 aa11.99□□□□□ -0.49
RTN4-201ENST00000317610 A0A087WSZ3 146 aa11.97□□□□□ -0.49
RTN4-201ENST00000317610 CNBPP62633 177 aaKnown RBP11.97□□□□□ -0.49
RTN4-201ENST00000317610 DEFB116Q30KQ4 102 aa11.95□□□□□ -0.5
RTN4-201ENST00000317610 Q1T7F1 81 aa11.95□□□□□ -0.5
RTN4-201ENST00000317610 HUWE1Q7Z6Z7 4374 aaKnown RBP11.94□□□□□ -0.5
RTN4-201ENST00000317610 KRTAP29-1A8MX34 341 aaPredicted RBP11.94□□□□□ -0.5
RTN4-201ENST00000317610 NDUFB1O75438 58 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms