RNA–Protein interactions for RNA: ENST00000304060.9

ZNF440-201, Transcript of zinc finger protein 440, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF440, Length 4,189 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF440-201ENST00000304060 LRCOL1A6NCL2 159 aa3.86□□□□□ -1.79
ZNF440-201ENST00000304060 TSHBP01222 138 aa3.86□□□□□ -1.79
ZNF440-201ENST00000304060 TSPEAR-AS2P59090 65 aa3.86□□□□□ -1.79
ZNF440-201ENST00000304060 CIRBP-AS1Q8TBR5 109 aa3.86□□□□□ -1.79
ZNF440-201ENST00000304060 UBE2AP49459 152 aa3.86□□□□□ -1.79
ZNF440-201ENST00000304060 S100A7L2Q5SY68 101 aa3.86□□□□□ -1.79
ZNF440-201ENST00000304060 C11orf72Q8NBR9 251 aa3.86□□□□□ -1.79
ZNF440-201ENST00000304060 ZNF80P51504 273 aaPredicted RBP3.85□□□□□ -1.79
ZNF440-201ENST00000304060 SUMO4Q6EEV6 95 aa3.85□□□□□ -1.79
ZNF440-201ENST00000304060 SMIM2Q9BVW6 85 aa3.85□□□□□ -1.79
ZNF440-201ENST00000304060 PLECQ15149 4684 aaKnown RBP3.85□□□□□ -1.79
ZNF440-201ENST00000304060 DNAH11Q96DT5 4516 aa3.85□□□□□ -1.79
ZNF440-201ENST00000304060 DNAH3Q8TD57 4116 aa3.85□□□□□ -1.79
ZNF440-201ENST00000304060 A0A087WZ39 114 aa3.84□□□□□ -1.79
ZNF440-201ENST00000304060 Q1T7F1 81 aa3.84□□□□□ -1.79
ZNF440-201ENST00000304060 SPINK6Q6UWN8 80 aa3.84□□□□□ -1.79
ZNF440-201ENST00000304060 Q6ZRP5 223 aa3.84□□□□□ -1.79
ZNF440-201ENST00000304060 CHCHD10Q8WYQ3 142 aaPredicted RBP3.84□□□□□ -1.79
ZNF440-201ENST00000304060 KIAA1109Q2LD37 5005 aa3.84□□□□□ -1.8
ZNF440-201ENST00000304060 Q6ZSA8 131 aa3.84□□□□□ -1.8
ZNF440-201ENST00000304060 LINC00167Q96N53 147 aa3.84□□□□□ -1.8
ZNF440-201ENST00000304060 PSORS1C2Q9UIG4 136 aa3.84□□□□□ -1.8
ZNF440-201ENST00000304060 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.83□□□□□ -1.8
ZNF440-201ENST00000304060 IGKV2-29A2NJV5 120 aaPredicted RBP3.83□□□□□ -1.8
ZNF440-201ENST00000304060 F8WEM9 126 aa3.83□□□□□ -1.8
ZNF440-201ENST00000304060 NDUFA12Q9UI09 145 aa3.83□□□□□ -1.8
ZNF440-201ENST00000304060 HIGD2BQ4VC39 106 aa3.83□□□□□ -1.8
ZNF440-201ENST00000304060 C9orf163Q8N9P6 203 aa3.83□□□□□ -1.8
ZNF440-201ENST00000304060 TRAV7A0A075B6U4 112 aa3.83□□□□□ -1.8
ZNF440-201ENST00000304060 FAM19A3Q7Z5A8 133 aa3.83□□□□□ -1.8
ZNF440-201ENST00000304060 DIRC1Q969H9 104 aa3.83□□□□□ -1.8
ZNF440-201ENST00000304060 FAM30AQ9NZY2 134 aa3.83□□□□□ -1.8
ZNF440-201ENST00000304060 TRAV13-2A0A0B4J235 113 aa3.82□□□□□ -1.8
ZNF440-201ENST00000304060 COX6CP09669 75 aa3.82□□□□□ -1.8
ZNF440-201ENST00000304060 LCE2CQ5TA81 110 aa3.82□□□□□ -1.8
ZNF440-201ENST00000304060 MUSTN1Q8IVN3 82 aa3.82□□□□□ -1.8
ZNF440-201ENST00000304060 CCKP06307 115 aa3.82□□□□□ -1.8
ZNF440-201ENST00000304060 PRR4Q16378 134 aa3.82□□□□□ -1.8
ZNF440-201ENST00000304060 C2orf66Q6UXQ4 117 aa3.82□□□□□ -1.8
ZNF440-201ENST00000304060 TRBV6-5A0A0K0K1A5 114 aa3.81□□□□□ -1.8
ZNF440-201ENST00000304060 LOC100131303A0A0U1RQF7 123 aa3.81□□□□□ -1.8
ZNF440-201ENST00000304060 ETDCA0A1B0GVM5 59 aa3.81□□□□□ -1.8
ZNF440-201ENST00000304060 PCLOQ9Y6V0 5065 aa3.81□□□□□ -1.8
ZNF440-201ENST00000304060 CD164L2Q6UWJ8 174 aa3.81□□□□□ -1.8
ZNF440-201ENST00000304060 RPL39LQ96EH5 51 aaKnown RBP3.8□□□□□ -1.8
ZNF440-201ENST00000304060 LCE2BO14633 110 aa3.8□□□□□ -1.8
ZNF440-201ENST00000304060 RNASE3P12724 160 aaKnown RBP3.8□□□□□ -1.8
ZNF440-201ENST00000304060 POLR2KP53803 58 aaKnown RBP3.79□□□□□ -1.8
ZNF440-201ENST00000304060 ZNF706Q9Y5V0 76 aaPredicted RBP3.79□□□□□ -1.8
ZNF440-201ENST00000304060 TRBV7-4A0A0J9YYF1 115 aa3.79□□□□□ -1.8
ZNF440-201ENST00000304060 DNAH10Q8IVF4 4471 aa3.79□□□□□ -1.8
ZNF440-201ENST00000304060 A0A0J9YXV3 536 aa3.79□□□□□ -1.8
ZNF440-201ENST00000304060 RPL28P46779 137 aaKnown RBP3.79□□□□□ -1.8
ZNF440-201ENST00000304060 PRR9Q5T870 116 aa3.79□□□□□ -1.8
ZNF440-201ENST00000304060 KIF25-AS1Q9Y6Z4 181 aa3.79□□□□□ -1.8
ZNF440-201ENST00000304060 IGLV5-45A0A087WSX0 123 aa3.78□□□□□ -1.8
ZNF440-201ENST00000304060 A0A087WYN8 130 aa3.78□□□□□ -1.8
ZNF440-201ENST00000304060 A0A1B0GUV1 79 aa3.78□□□□□ -1.8
ZNF440-201ENST00000304060 PHF5AQ7RTV0 110 aaKnown RBP3.78□□□□□ -1.8
ZNF440-201ENST00000304060 RPL39P62891 51 aaKnown RBP3.78□□□□□ -1.8
ZNF440-201ENST00000304060 RNASE13Q5GAN3 156 aaKnown RBP3.78□□□□□ -1.8
ZNF440-201ENST00000304060 ZNF625Q96I27 306 aaPredicted RBP3.78□□□□□ -1.8
ZNF440-201ENST00000304060 HYDINQ4G0P3 5121 aa3.78□□□□□ -1.8
ZNF440-201ENST00000304060 TRBV27A0A0K0K1C4 114 aa3.78□□□□□ -1.8
ZNF440-201ENST00000304060 C20orf203Q8NBC4 194 aa3.78□□□□□ -1.8
ZNF440-201ENST00000304060 OPRPNQ99935 248 aaPredicted RBP3.78□□□□□ -1.8
ZNF440-201ENST00000304060 M0QY20 66 aa3.77□□□□□ -1.81
ZNF440-201ENST00000304060 CLEC2BQ92478 149 aa3.77□□□□□ -1.81
ZNF440-201ENST00000304060 IGLV1-50A0A075B6I6 118 aa3.77□□□□□ -1.81
ZNF440-201ENST00000304060 FAM104AQ969W3 186 aa3.77□□□□□ -1.81
ZNF440-201ENST00000304060 A0A087X002 238 aa3.77□□□□□ -1.81
ZNF440-201ENST00000304060 CNBPP62633 177 aaKnown RBP3.77□□□□□ -1.81
ZNF440-201ENST00000304060 KTN1-AS1Q86SY8 53 aa3.76□□□□□ -1.81
ZNF440-201ENST00000304060 LINC00846Q9NV44 126 aa3.76□□□□□ -1.81
ZNF440-201ENST00000304060 LINC00959A0A1B0GUT2 108 aa3.75□□□□□ -1.81
ZNF440-201ENST00000304060 Q75L30 129 aa3.75□□□□□ -1.81
ZNF440-201ENST00000304060 COX7B2Q8TF08 81 aa3.75□□□□□ -1.81
ZNF440-201ENST00000304060 COX6A2Q02221 97 aa3.75□□□□□ -1.81
ZNF440-201ENST00000304060 LCE2AQ5TA79 106 aaPredicted RBP3.75□□□□□ -1.81
ZNF440-201ENST00000304060 Q9UF83 564 aa3.75□□□□□ -1.81
ZNF440-201ENST00000304060 DNAL4O96015 105 aa3.75□□□□□ -1.81
ZNF440-201ENST00000304060 ADAMTSL4-AS1Q5T5F5 129 aa3.75□□□□□ -1.81
ZNF440-201ENST00000304060 PLAC8Q9NZF1 115 aa3.74□□□□□ -1.81
ZNF440-201ENST00000304060 C11orf21Q9P2W6 132 aa3.74□□□□□ -1.81
ZNF440-201ENST00000304060 STARD9Q9P2P6 4700 aa3.74□□□□□ -1.81
ZNF440-201ENST00000304060 CXCL6P80162 114 aa3.74□□□□□ -1.81
ZNF440-201ENST00000304060 C1orf137Q5JT78 98 aa3.74□□□□□ -1.81
ZNF440-201ENST00000304060 BAALC-AS2P0C853 105 aa3.73□□□□□ -1.81
ZNF440-201ENST00000304060 SRRM2Q9UQ35 2752 aaKnown RBP3.73□□□□□ -1.81
ZNF440-201ENST00000304060 PRR3P79522 188 aaKnown RBP3.73□□□□□ -1.81
ZNF440-201ENST00000304060 BRK1Q8WUW1 75 aa3.73□□□□□ -1.81
ZNF440-201ENST00000304060 IGKV3D-7A0A0C4DH55 119 aa3.73□□□□□ -1.81
ZNF440-201ENST00000304060 IGLV5-39A0A0G2JS06 123 aa3.73□□□□□ -1.81
ZNF440-201ENST00000304060 NDUFS5O43920 106 aa3.73□□□□□ -1.81
ZNF440-201ENST00000304060 LINC00337Q8N6G1 96 aa3.73□□□□□ -1.81
ZNF440-201ENST00000304060 HIGD2AQ9BW72 106 aa3.73□□□□□ -1.81
ZNF440-201ENST00000304060 RYR1P21817 5038 aa3.73□□□□□ -1.81
ZNF440-201ENST00000304060 LOC110117498A0A087WWA1 95 aa3.73□□□□□ -1.81
ZNF440-201ENST00000304060 LINC01547P58512 204 aaPredicted RBP3.72□□□□□ -1.81
ZNF440-201ENST00000304060 FAM229BQ4G0N7 80 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms