RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 TRAV10A0A0B4J240 114 aa6.69□□□□□ -1.34
LIG3-201ENST00000262327 MIFP14174 115 aa6.69□□□□□ -1.34
LIG3-201ENST00000262327 LINC01547P58512 204 aaPredicted RBP6.69□□□□□ -1.34
LIG3-201ENST00000262327 NOTCH1P46531 2555 aa6.69□□□□□ -1.34
LIG3-201ENST00000262327 ZNF73O43830 326 aaPredicted RBP6.68□□□□□ -1.34
LIG3-201ENST00000262327 ATP5EP2Q5VTU8 51 aa6.68□□□□□ -1.34
LIG3-201ENST00000262327 Q6ZRU5 148 aa6.68□□□□□ -1.34
LIG3-201ENST00000262327 STAB1Q9NY15 2570 aa6.68□□□□□ -1.34
LIG3-201ENST00000262327 COX7BP24311 80 aa6.67□□□□□ -1.34
LIG3-201ENST00000262327 MUC7Q8TAX7 377 aa6.67□□□□□ -1.34
LIG3-201ENST00000262327 KPRPQ5T749 579 aaPredicted RBP6.66□□□□□ -1.34
LIG3-201ENST00000262327 Q6ZTC4 211 aa6.66□□□□□ -1.34
LIG3-201ENST00000262327 Q8N9L7 120 aa6.65□□□□□ -1.34
LIG3-201ENST00000262327 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.65□□□□□ -1.34
LIG3-201ENST00000262327 LOC110117498A0A087WWA1 95 aa6.65□□□□□ -1.35
LIG3-201ENST00000262327 DEFB105AQ8NG35 78 aa6.65□□□□□ -1.35
LIG3-201ENST00000262327 VPREB1P12018 145 aa6.64□□□□□ -1.35
LIG3-201ENST00000262327 IGKV2D-24A0A075B6R9 120 aa6.63□□□□□ -1.35
LIG3-201ENST00000262327 PRR15Q8IV56 129 aa6.63□□□□□ -1.35
LIG3-201ENST00000262327 ELOF1P60002 83 aaKnown RBP6.63□□□□□ -1.35
LIG3-201ENST00000262327 ESRGQ1W209 222 aa6.63□□□□□ -1.35
LIG3-201ENST00000262327 Q6ZRP5 223 aa6.63□□□□□ -1.35
LIG3-201ENST00000262327 C15orf56Q8N910 161 aa6.63□□□□□ -1.35
LIG3-201ENST00000262327 GVQW2A0A096LPI5 108 aaPredicted RBP6.62□□□□□ -1.35
LIG3-201ENST00000262327 BCE1O60756 84 aa6.62□□□□□ -1.35
LIG3-201ENST00000262327 COL6A5A8TX70 2615 aa6.62□□□□□ -1.35
LIG3-201ENST00000262327 ATP5EP56381 51 aaPredicted RBP6.62□□□□□ -1.35
LIG3-201ENST00000262327 CD164Q04900 197 aa6.62□□□□□ -1.35
LIG3-201ENST00000262327 C3orf84H3BNL1 204 aa6.61□□□□□ -1.35
LIG3-201ENST00000262327 NDUFC1O43677 76 aa6.61□□□□□ -1.35
LIG3-201ENST00000262327 KRTAP26-1Q6PEX3 210 aa6.61□□□□□ -1.35
LIG3-201ENST00000262327 TM2D3Q9BRN9 247 aa6.61□□□□□ -1.35
LIG3-201ENST00000262327 KRTAP21-3Q3LHN1 58 aa6.61□□□□□ -1.35
LIG3-201ENST00000262327 TRBV7-4A0A0J9YYF1 115 aa6.6□□□□□ -1.35
LIG3-201ENST00000262327 M0R378 163 aa6.6□□□□□ -1.35
LIG3-201ENST00000262327 RPL37AP8A6NKH3 93 aa6.59□□□□□ -1.35
LIG3-201ENST00000262327 K7EIL1 84 aa6.59□□□□□ -1.35
LIG3-201ENST00000262327 SERTAD4-AS1Q5TG53 156 aa6.59□□□□□ -1.35
LIG3-201ENST00000262327 LINC00528Q8N1L1 170 aa6.58□□□□□ -1.36
LIG3-201ENST00000262327 BPY2O14599 106 aa6.58□□□□□ -1.36
LIG3-201ENST00000262327 CMYA5Q8N3K9 4069 aa6.57□□□□□ -1.36
LIG3-201ENST00000262327 FAM168BA1KXE4 195 aa6.57□□□□□ -1.36
LIG3-201ENST00000262327 PDE6GP18545 87 aa6.56□□□□□ -1.36
LIG3-201ENST00000262327 SYCNQ0VAF6 134 aa6.56□□□□□ -1.36
LIG3-201ENST00000262327 CASC10Q5T4H9 136 aa6.56□□□□□ -1.36
LIG3-201ENST00000262327 NKAPP1Q8N9T2 125 aa6.56□□□□□ -1.36
LIG3-201ENST00000262327 PRB2P02812 416 aaPredicted RBP6.56□□□□□ -1.36
LIG3-201ENST00000262327 CXCL6P80162 114 aa6.56□□□□□ -1.36
LIG3-201ENST00000262327 CSMD3Q7Z407 3707 aa6.55□□□□□ -1.36
LIG3-201ENST00000262327 DEFB131BA0A096LNP1 70 aa6.55□□□□□ -1.36
LIG3-201ENST00000262327 TMEM254Q8TBM7 123 aa6.55□□□□□ -1.36
LIG3-201ENST00000262327 C7orf33Q8WU49 177 aa6.55□□□□□ -1.36
LIG3-201ENST00000262327 LRCOL1A6NCL2 159 aa6.54□□□□□ -1.36
LIG3-201ENST00000262327 NBEAL1Q6ZS30 2694 aa6.54□□□□□ -1.36
LIG3-201ENST00000262327 NREPQ16612 68 aa6.54□□□□□ -1.36
LIG3-201ENST00000262327 DNAH3Q8TD57 4116 aa6.54□□□□□ -1.36
LIG3-201ENST00000262327 Q8N377 158 aa6.53□□□□□ -1.36
LIG3-201ENST00000262327 ST20-AS1Q8NBB2 130 aa6.53□□□□□ -1.36
LIG3-201ENST00000262327 FUSP35637 526 aaKnown RBP eCLIP6.53□□□□□ -1.36
LIG3-201ENST00000262327 MRPL55Q7Z7F7 128 aaKnown RBP6.53□□□□□ -1.36
LIG3-201ENST00000262327 A0A0G2JQZ4 141 aa6.51□□□□□ -1.37
LIG3-201ENST00000262327 A0A1W2PNN7 141 aa6.51□□□□□ -1.37
LIG3-201ENST00000262327 C11orf45Q8TAV5 145 aa6.51□□□□□ -1.37
LIG3-201ENST00000262327 H3BNG1 76 aa6.51□□□□□ -1.37
LIG3-201ENST00000262327 H3BQ85 93 aa6.51□□□□□ -1.37
LIG3-201ENST00000262327 IGKV4-1P06312 121 aa6.51□□□□□ -1.37
LIG3-201ENST00000262327 PSPHP1O15172 72 aa6.5□□□□□ -1.37
LIG3-201ENST00000262327 PRYO14603 147 aa6.5□□□□□ -1.37
LIG3-201ENST00000262327 LINC01556Q5JQF7 62 aa6.5□□□□□ -1.37
LIG3-201ENST00000262327 B9D2Q9BPU9 175 aa6.5□□□□□ -1.37
LIG3-201ENST00000262327 Q9BRP9 147 aa6.5□□□□□ -1.37
LIG3-201ENST00000262327 C4orf48Q5BLP8 95 aa6.49□□□□□ -1.37
LIG3-201ENST00000262327 KCNQ1DNQ9H478 68 aa6.49□□□□□ -1.37
LIG3-201ENST00000262327 RBM12B-AS1Q9P1G2 102 aa6.49□□□□□ -1.37
LIG3-201ENST00000262327 ERC2-IT1O76042 136 aa6.48□□□□□ -1.37
LIG3-201ENST00000262327 LYSTQ99698 3801 aa6.48□□□□□ -1.37
LIG3-201ENST00000262327 SRRM2Q9UQ35 2752 aaKnown RBP6.48□□□□□ -1.37
LIG3-201ENST00000262327 A8MU10 97 aa6.48□□□□□ -1.37
LIG3-201ENST00000262327 ETDCA0A1B0GVM5 59 aa6.47□□□□□ -1.37
LIG3-201ENST00000262327 KRTAP7-1Q8IUC3 87 aa6.47□□□□□ -1.37
LIG3-201ENST00000262327 FAM30AQ9NZY2 134 aa6.47□□□□□ -1.37
LIG3-201ENST00000262327 A0A1W2PNM2 257 aa6.47□□□□□ -1.37
LIG3-201ENST00000262327 Q1T7F1 81 aa6.47□□□□□ -1.37
LIG3-201ENST00000262327 DNAH10Q8IVF4 4471 aa6.47□□□□□ -1.37
LIG3-201ENST00000262327 hDV103S1A0JD37 113 aa6.46□□□□□ -1.38
LIG3-201ENST00000262327 UBE2BP63146 152 aa6.46□□□□□ -1.38
LIG3-201ENST00000262327 HIGD2AQ9BW72 106 aa6.46□□□□□ -1.38
LIG3-201ENST00000262327 LINC00588Q9Y4M8 146 aa6.46□□□□□ -1.38
LIG3-201ENST00000262327 MGAM2Q2M2H8 2515 aa6.46□□□□□ -1.38
LIG3-201ENST00000262327 Q6ZRX8 168 aa6.46□□□□□ -1.38
LIG3-201ENST00000262327 DEFB116Q30KQ4 102 aa6.45□□□□□ -1.38
LIG3-201ENST00000262327 C1orf137Q5JT78 98 aa6.45□□□□□ -1.38
LIG3-201ENST00000262327 SMIM29Q86T20 159 aa6.45□□□□□ -1.38
LIG3-201ENST00000262327 IGLV1-50A0A075B6I6 118 aa6.44□□□□□ -1.38
LIG3-201ENST00000262327 TENM2Q9NT68 2774 aa6.44□□□□□ -1.38
LIG3-201ENST00000262327 TRAV22A0A0B4J277 110 aa6.44□□□□□ -1.38
LIG3-201ENST00000262327 OCR1Q9BZK8 76 aa6.44□□□□□ -1.38
LIG3-201ENST00000262327 IGKV2-24A0A0C4DH68 120 aa6.43□□□□□ -1.38
LIG3-201ENST00000262327 DNAH10OSP0CZ25 163 aa6.43□□□□□ -1.38
LIG3-201ENST00000262327 STAB2Q8WWQ8 2551 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms