RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 H3BQ85 93 aa8.13□□□□□ -1.11
NUP88-201ENST00000225696 FP248Q71RG6 208 aaPredicted RBP8.13□□□□□ -1.11
NUP88-201ENST00000225696 DEFB105AQ8NG35 78 aa8.13□□□□□ -1.11
NUP88-201ENST00000225696 BAHCC1Q9P281 2608 aa8.13□□□□□ -1.11
NUP88-201ENST00000225696 IGKV4-1P06312 121 aa8.12□□□□□ -1.11
NUP88-201ENST00000225696 KPRPQ5T749 579 aaPredicted RBP8.12□□□□□ -1.11
NUP88-201ENST00000225696 INAFM1C9JVW0 142 aa8.11□□□□□ -1.11
NUP88-201ENST00000225696 LINC00474Q9P2X8 69 aa8.11□□□□□ -1.11
NUP88-201ENST00000225696 SERTAD4-AS1Q5TG53 156 aa8.11□□□□□ -1.11
NUP88-201ENST00000225696 F8P00451 2351 aa8.11□□□□□ -1.11
NUP88-201ENST00000225696 WIPF1O43516 503 aa8.1□□□□□ -1.11
NUP88-201ENST00000225696 ESRGQ1W209 222 aa8.1□□□□□ -1.11
NUP88-201ENST00000225696 Q6ZTC4 211 aa8.1□□□□□ -1.11
NUP88-201ENST00000225696 TMEM254Q8TBM7 123 aa8.1□□□□□ -1.11
NUP88-201ENST00000225696 FLNBO75369 2602 aaKnown RBP8.09□□□□□ -1.11
NUP88-201ENST00000225696 Q8N377 158 aa8.09□□□□□ -1.11
NUP88-201ENST00000225696 LINC00336Q6ZUF6 198 aa8.08□□□□□ -1.12
NUP88-201ENST00000225696 OCR1Q9BZK8 76 aa8.07□□□□□ -1.12
NUP88-201ENST00000225696 MAST4O15021 2626 aa8.07□□□□□ -1.12
NUP88-201ENST00000225696 IGKV2D-24A0A075B6R9 120 aa8.07□□□□□ -1.12
NUP88-201ENST00000225696 C7orf33Q8WU49 177 aa8.07□□□□□ -1.12
NUP88-201ENST00000225696 FBN1P35555 2871 aaKnown RBP8.06□□□□□ -1.12
NUP88-201ENST00000225696 FAM168BA1KXE4 195 aa8.06□□□□□ -1.12
NUP88-201ENST00000225696 RPL37AP8A6NKH3 93 aa8.06□□□□□ -1.12
NUP88-201ENST00000225696 FAM229BQ4G0N7 80 aa8.06□□□□□ -1.12
NUP88-201ENST00000225696 KCNQ1DNQ9H478 68 aa8.05□□□□□ -1.12
NUP88-201ENST00000225696 C1orf43Q9BWL3 253 aa8.05□□□□□ -1.12
NUP88-201ENST00000225696 CMYA5Q8N3K9 4069 aa8.04□□□□□ -1.12
NUP88-201ENST00000225696 NOTCH1P46531 2555 aa8.04□□□□□ -1.12
NUP88-201ENST00000225696 SYCNQ0VAF6 134 aa8.04□□□□□ -1.12
NUP88-201ENST00000225696 Q9BRP9 147 aa8.04□□□□□ -1.12
NUP88-201ENST00000225696 OXLD1Q5BKU9 147 aa8.04□□□□□ -1.12
NUP88-201ENST00000225696 ST20-AS1Q8NBB2 130 aa8.04□□□□□ -1.12
NUP88-201ENST00000225696 HIGD2AQ9BW72 106 aa8.04□□□□□ -1.12
NUP88-201ENST00000225696 DNAH1Q9P2D7 4330 aa8.03□□□□□ -1.12
NUP88-201ENST00000225696 STAB1Q9NY15 2570 aa8.03□□□□□ -1.12
NUP88-201ENST00000225696 SMIM26A0A096LP01 95 aa8.03□□□□□ -1.12
NUP88-201ENST00000225696 A0A0U1RQV1 116 aa8.03□□□□□ -1.12
NUP88-201ENST00000225696 A0A1W2PNM2 257 aa8.03□□□□□ -1.12
NUP88-201ENST00000225696 IGLV5-48A0A075B6I7 105 aa8.03□□□□□ -1.12
NUP88-201ENST00000225696 NDUFC1O43677 76 aa8.03□□□□□ -1.12
NUP88-201ENST00000225696 NKAPP1Q8N9T2 125 aa8.03□□□□□ -1.12
NUP88-201ENST00000225696 KRTAP10-11P60412 298 aa8.02□□□□□ -1.13
NUP88-201ENST00000225696 KRTAP7-1Q8IUC3 87 aa8.02□□□□□ -1.13
NUP88-201ENST00000225696 SRRM2Q9UQ35 2752 aaKnown RBP8.02□□□□□ -1.13
NUP88-201ENST00000225696 CASC10Q5T4H9 136 aa8.01□□□□□ -1.13
NUP88-201ENST00000225696 SMIM29Q86T20 159 aa8.01□□□□□ -1.13
NUP88-201ENST00000225696 FAM30AQ9NZY2 134 aa8.01□□□□□ -1.13
NUP88-201ENST00000225696 H3BNG1 76 aa8□□□□□ -1.13
NUP88-201ENST00000225696 PRYO14603 147 aa8□□□□□ -1.13
NUP88-201ENST00000225696 ERC2-IT1O76042 136 aa8□□□□□ -1.13
NUP88-201ENST00000225696 LYSTQ99698 3801 aa8□□□□□ -1.13
NUP88-201ENST00000225696 KRTAP4-16G5E9R7 235 aaPredicted RBP8□□□□□ -1.13
NUP88-201ENST00000225696 A0A0G2JQZ4 141 aa7.99□□□□□ -1.13
NUP88-201ENST00000225696 A0A1W2PNN7 141 aa7.99□□□□□ -1.13
NUP88-201ENST00000225696 LINC01556Q5JQF7 62 aa7.99□□□□□ -1.13
NUP88-201ENST00000225696 Q6ZRX8 168 aa7.99□□□□□ -1.13
NUP88-201ENST00000225696 CSMD3Q7Z407 3707 aa7.99□□□□□ -1.13
NUP88-201ENST00000225696 DNAH10Q8IVF4 4471 aa7.99□□□□□ -1.13
NUP88-201ENST00000225696 TNP2Q05952 138 aa7.98□□□□□ -1.13
NUP88-201ENST00000225696 MPLKIPQ8TAP9 179 aa7.97□□□□□ -1.13
NUP88-201ENST00000225696 C1orf137Q5JT78 98 aa7.97□□□□□ -1.13
NUP88-201ENST00000225696 IGLV1-50A0A075B6I6 118 aa7.96□□□□□ -1.14
NUP88-201ENST00000225696 DEFB131BA0A096LNP1 70 aa7.95□□□□□ -1.14
NUP88-201ENST00000225696 FUSP35637 526 aaKnown RBP eCLIP7.95□□□□□ -1.14
NUP88-201ENST00000225696 DSCR10P59022 87 aa7.95□□□□□ -1.14
NUP88-201ENST00000225696 PRO0628Q9UI54 55 aa7.95□□□□□ -1.14
NUP88-201ENST00000225696 COL6A5A8TX70 2615 aa7.94□□□□□ -1.14
NUP88-201ENST00000225696 ATP5EP56381 51 aaPredicted RBP7.94□□□□□ -1.14
NUP88-201ENST00000225696 K7EQZ3 153 aa7.94□□□□□ -1.14
NUP88-201ENST00000225696 SPRR1AP35321 89 aa7.94□□□□□ -1.14
NUP88-201ENST00000225696 DHRS4-AS1Q9P1J3 65 aa7.94□□□□□ -1.14
NUP88-201ENST00000225696 NBEAL1Q6ZS30 2694 aa7.93□□□□□ -1.14
NUP88-201ENST00000225696 ETDCA0A1B0GVM5 59 aa7.93□□□□□ -1.14
NUP88-201ENST00000225696 Q8NBF4 154 aa7.93□□□□□ -1.14
NUP88-201ENST00000225696 DNAH3Q8TD57 4116 aa7.92□□□□□ -1.14
NUP88-201ENST00000225696 MRAPQ8TCY5 172 aa7.92□□□□□ -1.14
NUP88-201ENST00000225696 LRCOL1A6NCL2 159 aa7.91□□□□□ -1.14
NUP88-201ENST00000225696 TLX1NBP0CAT3 122 aa7.91□□□□□ -1.14
NUP88-201ENST00000225696 DNAH10OSP0CZ25 163 aa7.91□□□□□ -1.14
NUP88-201ENST00000225696 DEFB116Q30KQ4 102 aa7.91□□□□□ -1.14
NUP88-201ENST00000225696 C11orf45Q8TAV5 145 aa7.91□□□□□ -1.14
NUP88-201ENST00000225696 SPRR4Q96PI1 79 aa7.9□□□□□ -1.14
NUP88-201ENST00000225696 PLA2G2DQ9UNK4 145 aa7.9□□□□□ -1.14
NUP88-201ENST00000225696 LCE6AA0A183 80 aa7.9□□□□□ -1.15
NUP88-201ENST00000225696 F8WDY8 70 aa7.9□□□□□ -1.15
NUP88-201ENST00000225696 UBE2BP63146 152 aa7.89□□□□□ -1.15
NUP88-201ENST00000225696 BRK1Q8WUW1 75 aa7.89□□□□□ -1.15
NUP88-201ENST00000225696 MRPL55Q7Z7F7 128 aaKnown RBP7.88□□□□□ -1.15
NUP88-201ENST00000225696 LINC00588Q9Y4M8 146 aa7.88□□□□□ -1.15
NUP88-201ENST00000225696 IGLV5-37A0A075B6J1 123 aa7.88□□□□□ -1.15
NUP88-201ENST00000225696 KRTAP24-1Q3LI83 254 aa7.87□□□□□ -1.15
NUP88-201ENST00000225696 PKIGQ9Y2B9 76 aa7.87□□□□□ -1.15
NUP88-201ENST00000225696 ZCCHC13Q8WW36 166 aaKnown RBP7.87□□□□□ -1.15
NUP88-201ENST00000225696 LINC00476Q8WZB0 136 aa7.87□□□□□ -1.15
NUP88-201ENST00000225696 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.86□□□□□ -1.15
NUP88-201ENST00000225696 DNAH9Q9NYC9 4486 aa7.86□□□□□ -1.15
NUP88-201ENST00000225696 PRR4Q16378 134 aa7.86□□□□□ -1.15
NUP88-201ENST00000225696 HUWE1Q7Z6Z7 4374 aaKnown RBP7.86□□□□□ -1.15
NUP88-201ENST00000225696 hDV103S1A0JD37 113 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms