RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 LINC00587B1AMM8 73 aa11.28□□□□□ -0.6
CLN3-239ENST00000628023 SMIM13P0DJ93 91 aa11.28□□□□□ -0.6
CLN3-239ENST00000628023 AKR1D1P51857 326 aa11.28□□□□□ -0.6
CLN3-239ENST00000628023 UBE2BP63146 152 aa11.27□□□□□ -0.61
CLN3-239ENST00000628023 SND1-IT1Q9HBX3 110 aa11.27□□□□□ -0.61
CLN3-239ENST00000628023 KRTAP10-4P60372 401 aaPredicted RBP11.26□□□□□ -0.61
CLN3-239ENST00000628023 PRR3P79522 188 aaKnown RBP11.26□□□□□ -0.61
CLN3-239ENST00000628023 KRTAP7-1Q8IUC3 87 aa11.26□□□□□ -0.61
CLN3-239ENST00000628023 ATOH7Q8N100 152 aa11.26□□□□□ -0.61
CLN3-239ENST00000628023 C5orf52A6NGY3 159 aa11.25□□□□□ -0.61
CLN3-239ENST00000628023 C22orf24Q9Y442 160 aa11.25□□□□□ -0.61
CLN3-239ENST00000628023 LBHQ53QV2 105 aaPredicted RBP11.24□□□□□ -0.61
CLN3-239ENST00000628023 NKAPP1Q8N9T2 125 aa11.24□□□□□ -0.61
CLN3-239ENST00000628023 PLA2G2DQ9UNK4 145 aa11.23□□□□□ -0.61
CLN3-239ENST00000628023 MRPL55Q7Z7F7 128 aaKnown RBP11.22□□□□□ -0.61
CLN3-239ENST00000628023 MIR7-3HGQ8N6C7 128 aa11.22□□□□□ -0.61
CLN3-239ENST00000628023 TP73-AS1Q9UF72 201 aa11.22□□□□□ -0.61
CLN3-239ENST00000628023 RPL24P83731 157 aaKnown RBP11.21□□□□□ -0.61
CLN3-239ENST00000628023 PSORS1C2Q9UIG4 136 aa11.21□□□□□ -0.61
CLN3-239ENST00000628023 IGKV2D-26A0A0A0MRZ7 120 aa11.2□□□□□ -0.62
CLN3-239ENST00000628023 ZNF815PA8K554 130 aa11.2□□□□□ -0.62
CLN3-239ENST00000628023 C1orf137Q5JT78 98 aa11.2□□□□□ -0.62
CLN3-239ENST00000628023 IGLV5-37A0A075B6J1 123 aa11.19□□□□□ -0.62
CLN3-239ENST00000628023 GAGE10A6NGK3 116 aa11.19□□□□□ -0.62
CLN3-239ENST00000628023 ANKRD39Q53RE8 183 aa11.19□□□□□ -0.62
CLN3-239ENST00000628023 TMA7Q9Y2S6 64 aaKnown RBP11.19□□□□□ -0.62
CLN3-239ENST00000628023 A0A0J9YXY3 114 aa11.18□□□□□ -0.62
CLN3-239ENST00000628023 HSBP1L1C9JCN9 74 aa11.18□□□□□ -0.62
CLN3-239ENST00000628023 SCGB1D1O95968 90 aa11.18□□□□□ -0.62
CLN3-239ENST00000628023 HNRNPA3P51991 378 aaKnown RBP11.18□□□□□ -0.62
CLN3-239ENST00000628023 DAND5Q8N907 189 aa11.18□□□□□ -0.62
CLN3-239ENST00000628023 VPREB1P12018 145 aa11.17□□□□□ -0.62
CLN3-239ENST00000628023 BOD1L2Q8IYS8 172 aa11.17□□□□□ -0.62
CLN3-239ENST00000628023 MIEN1Q9BRT3 115 aa11.17□□□□□ -0.62
CLN3-239ENST00000628023 KRTAP11-1Q8IUC1 163 aa11.16□□□□□ -0.62
CLN3-239ENST00000628023 LINC00167Q96N53 147 aa11.16□□□□□ -0.62
CLN3-239ENST00000628023 TTTY13Q9BZ97 58 aa11.16□□□□□ -0.62
CLN3-239ENST00000628023 RPL37AP8A6NKH3 93 aa11.15□□□□□ -0.62
CLN3-239ENST00000628023 SCGB1D4Q6XE38 83 aa11.14□□□□□ -0.63
CLN3-239ENST00000628023 NPC2P61916 151 aa11.12□□□□□ -0.63
CLN3-239ENST00000628023 Q8NDZ9 215 aa11.12□□□□□ -0.63
CLN3-239ENST00000628023 LRP1Q07954 4544 aaKnown RBP11.11□□□□□ -0.63
CLN3-239ENST00000628023 IGKV2-28A0A075B6P5 120 aa11.11□□□□□ -0.63
CLN3-239ENST00000628023 NCR3O14931 201 aa11.11□□□□□ -0.63
CLN3-239ENST00000628023 IGKV2D-28P01615 120 aa11.11□□□□□ -0.63
CLN3-239ENST00000628023 TIMM17BO60830 172 aa11.1□□□□□ -0.63
CLN3-239ENST00000628023 IGLV7-43P04211 117 aa11.1□□□□□ -0.63
CLN3-239ENST00000628023 ADAMTSL4-AS1Q5T5F5 129 aa11.1□□□□□ -0.63
CLN3-239ENST00000628023 SPINK6Q6UWN8 80 aa11.1□□□□□ -0.63
CLN3-239ENST00000628023 PCP2Q8IVA1 136 aa11.1□□□□□ -0.63
CLN3-239ENST00000628023 M0R378 163 aa11.09□□□□□ -0.63
CLN3-239ENST00000628023 PKHD1L1Q86WI1 4243 aa11.09□□□□□ -0.63
CLN3-239ENST00000628023 TMEM238C9JI98 176 aa11.08□□□□□ -0.64
CLN3-239ENST00000628023 LOC107984156A0A0G2JMH3 177 aa11.07□□□□□ -0.64
CLN3-239ENST00000628023 ARL17AQ8IVW1 177 aa11.07□□□□□ -0.64
CLN3-239ENST00000628023 LITAFQ99732 161 aa11.07□□□□□ -0.64
CLN3-239ENST00000628023 IGLV1-50A0A075B6I6 118 aa11.06□□□□□ -0.64
CLN3-239ENST00000628023 BCE1O60756 84 aa11.06□□□□□ -0.64
CLN3-239ENST00000628023 SRSF9Q13242 221 aaKnown RBP eCLIP11.05□□□□□ -0.64
CLN3-239ENST00000628023 SOSTDC1Q6X4U4 206 aa11.05□□□□□ -0.64
CLN3-239ENST00000628023 SPANXB1Q9NS25 103 aaPredicted RBP11.05□□□□□ -0.64
CLN3-239ENST00000628023 LINC00308Q8TCZ7 52 aa11.04□□□□□ -0.64
CLN3-239ENST00000628023 DIRC1Q969H9 104 aa11.04□□□□□ -0.64
CLN3-239ENST00000628023 FAT3Q8TDW7 4589 aa11.03□□□□□ -0.64
CLN3-239ENST00000628023 NDUFC2O95298 119 aa11.03□□□□□ -0.64
CLN3-239ENST00000628023 UBE2AP49459 152 aa11.03□□□□□ -0.64
CLN3-239ENST00000628023 S100A12P80511 92 aa11.03□□□□□ -0.64
CLN3-239ENST00000628023 REG3GQ6UW15 175 aa11.03□□□□□ -0.64
CLN3-239ENST00000628023 TRBV10-2A0A0K0K1G8 114 aa11.02□□□□□ -0.65
CLN3-239ENST00000628023 JOSD1Q15040 202 aaPredicted RBP11.02□□□□□ -0.65
CLN3-239ENST00000628023 COPS9Q8WXC6 57 aa11.02□□□□□ -0.65
CLN3-239ENST00000628023 SPANXDQ9BXN6 97 aa11.02□□□□□ -0.65
CLN3-239ENST00000628023 TMEM126AQ9H061 195 aa11.02□□□□□ -0.65
CLN3-239ENST00000628023 SPANXCQ9NY87 97 aa11.02□□□□□ -0.65
CLN3-239ENST00000628023 ZNF861PO60384 105 aa11.01□□□□□ -0.65
CLN3-239ENST00000628023 EIF4EBP3O60516 100 aaPredicted RBP11.01□□□□□ -0.65
CLN3-239ENST00000628023 RPL28P46779 137 aaKnown RBP11.01□□□□□ -0.65
CLN3-239ENST00000628023 S100A7L2Q5SY68 101 aa11.01□□□□□ -0.65
CLN3-239ENST00000628023 VAMP8Q9BV40 100 aa11.01□□□□□ -0.65
CLN3-239ENST00000628023 PAM16Q9Y3D7 125 aa11.01□□□□□ -0.65
CLN3-239ENST00000628023 TRBV10-3A0A0K0K1G6 114 aa11□□□□□ -0.65
CLN3-239ENST00000628023 PRYO14603 147 aa11□□□□□ -0.65
CLN3-239ENST00000628023 MT1HL1P0DM35 61 aa11□□□□□ -0.65
CLN3-239ENST00000628023 FAM19A1Q7Z5A9 133 aa11□□□□□ -0.65
CLN3-239ENST00000628023 H0Y9J4 135 aa10.99□□□□□ -0.65
CLN3-239ENST00000628023 DDTP30046 118 aa10.99□□□□□ -0.65
CLN3-239ENST00000628023 SPATA45Q537H7 98 aa10.98□□□□□ -0.65
CLN3-239ENST00000628023 Q6ZVH6 145 aa10.98□□□□□ -0.65
CLN3-239ENST00000628023 HMCN2Q8NDA2 5059 aa10.97□□□□□ -0.65
CLN3-239ENST00000628023 IFITM1P13164 125 aa10.97□□□□□ -0.65
CLN3-239ENST00000628023 PRLHP81277 87 aa10.97□□□□□ -0.65
CLN3-239ENST00000628023 COX8AP10176 69 aa10.96□□□□□ -0.65
CLN3-239ENST00000628023 OR13C6PQ8NH95 151 aa10.95□□□□□ -0.66
CLN3-239ENST00000628023 KCNQ1DNQ9H478 68 aa10.95□□□□□ -0.66
CLN3-239ENST00000628023 ETDCA0A1B0GVM5 59 aa10.94□□□□□ -0.66
CLN3-239ENST00000628023 IGLV6-57P01721 117 aa10.93□□□□□ -0.66
CLN3-239ENST00000628023 PYY3Q5JQD4 70 aa10.93□□□□□ -0.66
CLN3-239ENST00000628023 MUSTN1Q8IVN3 82 aa10.93□□□□□ -0.66
CLN3-239ENST00000628023 LINC00518Q8N0U6 118 aa10.93□□□□□ -0.66
CLN3-239ENST00000628023 C14orf144Q96I85 54 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms