RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 XAGE1AQ9HD64 81 aa12.44□□□□□ -0.42
UPF3A-211ENST00000618700 ZNF815PA8K554 130 aa12.43□□□□□ -0.42
UPF3A-211ENST00000618700 LINC00587B1AMM8 73 aa12.43□□□□□ -0.42
UPF3A-211ENST00000618700 SMIM13P0DJ93 91 aa12.43□□□□□ -0.42
UPF3A-211ENST00000618700 DPH3Q96FX2 82 aa12.43□□□□□ -0.42
UPF3A-211ENST00000618700 A0A0J9YXY3 114 aa12.42□□□□□ -0.42
UPF3A-211ENST00000618700 LINC00158P58513 81 aa12.42□□□□□ -0.42
UPF3A-211ENST00000618700 PYY3Q5JQD4 70 aa12.42□□□□□ -0.42
UPF3A-211ENST00000618700 A0A0U1RRA0 63 aa12.41□□□□□ -0.42
UPF3A-211ENST00000618700 FAM168BA1KXE4 195 aa12.41□□□□□ -0.42
UPF3A-211ENST00000618700 KRTAP7-1Q8IUC3 87 aa12.41□□□□□ -0.42
UPF3A-211ENST00000618700 SND1-IT1Q9HBX3 110 aa12.41□□□□□ -0.42
UPF3A-211ENST00000618700 PCP2Q8IVA1 136 aa12.4□□□□□ -0.42
UPF3A-211ENST00000618700 MIR7-3HGQ8N6C7 128 aa12.39□□□□□ -0.43
UPF3A-211ENST00000618700 FAT1Q14517 4588 aa12.38□□□□□ -0.43
UPF3A-211ENST00000618700 SERTAD4-AS1Q5TG53 156 aa12.38□□□□□ -0.43
UPF3A-211ENST00000618700 LITAFQ99732 161 aa12.38□□□□□ -0.43
UPF3A-211ENST00000618700 PLA2G2DQ9UNK4 145 aa12.38□□□□□ -0.43
UPF3A-211ENST00000618700 TIMM17BO60830 172 aa12.37□□□□□ -0.43
UPF3A-211ENST00000618700 FAM19A5Q7Z5A7 132 aaPredicted RBP12.37□□□□□ -0.43
UPF3A-211ENST00000618700 SMR3BP02814 79 aaPredicted RBP12.36□□□□□ -0.43
UPF3A-211ENST00000618700 PCLOQ9Y6V0 5065 aa12.35□□□□□ -0.43
UPF3A-211ENST00000618700 ADAMTSL4-AS1Q5T5F5 129 aa12.35□□□□□ -0.43
UPF3A-211ENST00000618700 DAND5Q8N907 189 aa12.35□□□□□ -0.43
UPF3A-211ENST00000618700 VAMP8Q9BV40 100 aa12.35□□□□□ -0.43
UPF3A-211ENST00000618700 PAM16Q9Y3D7 125 aa12.34□□□□□ -0.43
UPF3A-211ENST00000618700 IGLV5-37A0A075B6J1 123 aa12.33□□□□□ -0.44
UPF3A-211ENST00000618700 Q8NDZ9 215 aa12.33□□□□□ -0.44
UPF3A-211ENST00000618700 LOC107984156A0A0G2JMH3 177 aa12.32□□□□□ -0.44
UPF3A-211ENST00000618700 M0QXV9 152 aa12.32□□□□□ -0.44
UPF3A-211ENST00000618700 VPREB1P12018 145 aa12.32□□□□□ -0.44
UPF3A-211ENST00000618700 SPATA45Q537H7 98 aa12.32□□□□□ -0.44
UPF3A-211ENST00000618700 SCGB1D4Q6XE38 83 aa12.32□□□□□ -0.44
UPF3A-211ENST00000618700 ARL17AQ8IVW1 177 aa12.32□□□□□ -0.44
UPF3A-211ENST00000618700 Q8N1X5 172 aa12.32□□□□□ -0.44
UPF3A-211ENST00000618700 VPS13BQ7Z7G8 4022 aa12.31□□□□□ -0.44
UPF3A-211ENST00000618700 COX8AP10176 69 aa12.31□□□□□ -0.44
UPF3A-211ENST00000618700 PHF5AQ7RTV0 110 aaKnown RBP12.31□□□□□ -0.44
UPF3A-211ENST00000618700 BOD1L2Q8IYS8 172 aa12.31□□□□□ -0.44
UPF3A-211ENST00000618700 TP73-AS1Q9UF72 201 aa12.31□□□□□ -0.44
UPF3A-211ENST00000618700 KRTAP4-5Q9BYR2 181 aa12.3□□□□□ -0.44
UPF3A-211ENST00000618700 C22orf24Q9Y442 160 aa12.3□□□□□ -0.44
UPF3A-211ENST00000618700 SOSTDC1Q6X4U4 206 aa12.29□□□□□ -0.44
UPF3A-211ENST00000618700 C7orf33Q8WU49 177 aa12.29□□□□□ -0.44
UPF3A-211ENST00000618700 SPANXDQ9BXN6 97 aa12.29□□□□□ -0.44
UPF3A-211ENST00000618700 SPANXCQ9NY87 97 aa12.29□□□□□ -0.44
UPF3A-211ENST00000618700 LOC105371267A0A1B0GV96 52 aa12.28□□□□□ -0.44
UPF3A-211ENST00000618700 TMEM238C9JI98 176 aa12.28□□□□□ -0.44
UPF3A-211ENST00000618700 DLEU1O43261 78 aa12.28□□□□□ -0.44
UPF3A-211ENST00000618700 RPL24P83731 157 aaKnown RBP12.28□□□□□ -0.44
UPF3A-211ENST00000618700 KRTAP9-2Q9BYQ4 174 aa12.28□□□□□ -0.44
UPF3A-211ENST00000618700 MRPL55Q7Z7F7 128 aaKnown RBP12.27□□□□□ -0.45
UPF3A-211ENST00000618700 Q5VSD8 79 aa12.26□□□□□ -0.45
UPF3A-211ENST00000618700 NKAPP1Q8N9T2 125 aa12.26□□□□□ -0.45
UPF3A-211ENST00000618700 LINC00308Q8TCZ7 52 aa12.26□□□□□ -0.45
UPF3A-211ENST00000618700 C14orf144Q96I85 54 aa12.26□□□□□ -0.45
UPF3A-211ENST00000618700 MIEN1Q9BRT3 115 aa12.26□□□□□ -0.45
UPF3A-211ENST00000618700 KRTAP9-1A8MXZ3 250 aaPredicted RBP12.24□□□□□ -0.45
UPF3A-211ENST00000618700 KRTAP10-4P60372 401 aaPredicted RBP12.24□□□□□ -0.45
UPF3A-211ENST00000618700 NPC2P61916 151 aa12.24□□□□□ -0.45
UPF3A-211ENST00000618700 LBHQ53QV2 105 aaPredicted RBP12.24□□□□□ -0.45
UPF3A-211ENST00000618700 ABCA13Q86UQ4 5058 aa12.24□□□□□ -0.45
UPF3A-211ENST00000618700 KRTAP11-1Q8IUC1 163 aa12.24□□□□□ -0.45
UPF3A-211ENST00000618700 RPL37AP61513 92 aaKnown RBP12.23□□□□□ -0.45
UPF3A-211ENST00000618700 Q6ZVH6 145 aa12.23□□□□□ -0.45
UPF3A-211ENST00000618700 SPANXB1Q9NS25 103 aaPredicted RBP12.23□□□□□ -0.45
UPF3A-211ENST00000618700 NDUFC2O95298 119 aa12.22□□□□□ -0.45
UPF3A-211ENST00000618700 SMIM6P0DI80 62 aa12.22□□□□□ -0.45
UPF3A-211ENST00000618700 SLC25A34Q6PIV7 304 aa12.22□□□□□ -0.45
UPF3A-211ENST00000618700 LINC00167Q96N53 147 aa12.22□□□□□ -0.45
UPF3A-211ENST00000618700 PPDPFQ9H3Y8 114 aa12.22□□□□□ -0.45
UPF3A-211ENST00000618700 UBE2BP63146 152 aa12.21□□□□□ -0.45
UPF3A-211ENST00000618700 PRR3P79522 188 aaKnown RBP12.21□□□□□ -0.45
UPF3A-211ENST00000618700 SRRM2Q9UQ35 2752 aaKnown RBP12.21□□□□□ -0.46
UPF3A-211ENST00000618700 KRTAP9-6A0A140TA67 174 aa12.2□□□□□ -0.46
UPF3A-211ENST00000618700 GAGE10A6NGK3 116 aa12.2□□□□□ -0.46
UPF3A-211ENST00000618700 M0R378 163 aa12.2□□□□□ -0.46
UPF3A-211ENST00000618700 PLA2G1BP04054 148 aaKnown RBP12.2□□□□□ -0.46
UPF3A-211ENST00000618700 IFITM1P13164 125 aa12.2□□□□□ -0.46
UPF3A-211ENST00000618700 S100A12P80511 92 aa12.2□□□□□ -0.46
UPF3A-211ENST00000618700 NCR3O14931 201 aa12.19□□□□□ -0.46
UPF3A-211ENST00000618700 PSORS1C2Q9UIG4 136 aa12.19□□□□□ -0.46
UPF3A-211ENST00000618700 TRBV10-2A0A0K0K1G8 114 aa12.18□□□□□ -0.46
UPF3A-211ENST00000618700 C2orf91Q6ZV80 131 aa12.18□□□□□ -0.46
UPF3A-211ENST00000618700 COPS9Q8WXC6 57 aa12.18□□□□□ -0.46
UPF3A-211ENST00000618700 HIGD1BQ9P298 99 aa12.17□□□□□ -0.46
UPF3A-211ENST00000618700 IGLV1-50A0A075B6I6 118 aa12.16□□□□□ -0.46
UPF3A-211ENST00000618700 RPL37AP8A6NKH3 93 aa12.16□□□□□ -0.46
UPF3A-211ENST00000618700 MUSTN1Q8IVN3 82 aa12.16□□□□□ -0.46
UPF3A-211ENST00000618700 KRTAP4-12Q9BQ66 201 aa12.16□□□□□ -0.46
UPF3A-211ENST00000618700 IGKV2-28A0A075B6P5 120 aa12.15□□□□□ -0.46
UPF3A-211ENST00000618700 IGKV2D-28P01615 120 aa12.15□□□□□ -0.46
UPF3A-211ENST00000618700 SRSF9Q13242 221 aaKnown RBP eCLIP12.15□□□□□ -0.46
UPF3A-211ENST00000618700 PKHD1L1Q86WI1 4243 aa12.15□□□□□ -0.46
UPF3A-211ENST00000618700 C1orf137Q5JT78 98 aa12.12□□□□□ -0.47
UPF3A-211ENST00000618700 TRBV10-3A0A0K0K1G6 114 aa12.11□□□□□ -0.47
UPF3A-211ENST00000618700 HIST1H4GQ99525 98 aa12.11□□□□□ -0.47
UPF3A-211ENST00000618700 IGLV6-57P01721 117 aa12.1□□□□□ -0.47
UPF3A-211ENST00000618700 KRTAP19-1Q8IUB9 90 aa12.1□□□□□ -0.47
UPF3A-211ENST00000618700 UQCR10Q9UDW1 63 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 119.6 ms