RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 SRRM2Q9UQ35 2752 aaKnown RBP10.38□□□□□ -0.75
CCDC28A-202ENST00000611852 TP73-AS1Q9UF72 201 aa10.37□□□□□ -0.75
CCDC28A-202ENST00000611852 PCLOQ9Y6V0 5065 aa10.36□□□□□ -0.75
CCDC28A-202ENST00000611852 RPL37AP61513 92 aaKnown RBP10.36□□□□□ -0.75
CCDC28A-202ENST00000611852 C7orf33Q8WU49 177 aa10.36□□□□□ -0.75
CCDC28A-202ENST00000611852 XAGE1AQ9HD64 81 aa10.36□□□□□ -0.75
CCDC28A-202ENST00000611852 CTAG1AP78358 180 aa10.35□□□□□ -0.75
CCDC28A-202ENST00000611852 PLEKHB2Q96CS7 222 aa10.35□□□□□ -0.75
CCDC28A-202ENST00000611852 LEPROTO15243 131 aa10.34□□□□□ -0.75
CCDC28A-202ENST00000611852 LGALS3P17931 250 aaKnown RBP10.34□□□□□ -0.75
CCDC28A-202ENST00000611852 KRTAP7-1Q8IUC3 87 aa10.34□□□□□ -0.75
CCDC28A-202ENST00000611852 ERG28Q9UKR5 140 aa10.34□□□□□ -0.75
CCDC28A-202ENST00000611852 MYMXA0A1B0GTQ4 84 aa10.33□□□□□ -0.76
CCDC28A-202ENST00000611852 J3QQQ9 107 aa10.33□□□□□ -0.76
CCDC28A-202ENST00000611852 PFN2P35080 140 aa10.33□□□□□ -0.76
CCDC28A-202ENST00000611852 FAM19A5Q7Z5A7 132 aaPredicted RBP10.33□□□□□ -0.76
CCDC28A-202ENST00000611852 TTTY13Q9BZ97 58 aa10.33□□□□□ -0.76
CCDC28A-202ENST00000611852 ZNF815PA8K554 130 aa10.33□□□□□ -0.76
CCDC28A-202ENST00000611852 TSPEAR-AS2P59090 65 aa10.33□□□□□ -0.76
CCDC28A-202ENST00000611852 COX17Q14061 63 aa10.33□□□□□ -0.76
CCDC28A-202ENST00000611852 C2orf91Q6ZV80 131 aa10.33□□□□□ -0.76
CCDC28A-202ENST00000611852 VPS13BQ7Z7G8 4022 aa10.32□□□□□ -0.76
CCDC28A-202ENST00000611852 PHF5AQ7RTV0 110 aaKnown RBP10.32□□□□□ -0.76
CCDC28A-202ENST00000611852 NDUFA12Q9UI09 145 aa10.32□□□□□ -0.76
CCDC28A-202ENST00000611852 M0R143 59 aa10.31□□□□□ -0.76
CCDC28A-202ENST00000611852 INAFM2P0DMQ5 153 aa10.31□□□□□ -0.76
CCDC28A-202ENST00000611852 HIGD1BQ9P298 99 aa10.31□□□□□ -0.76
CCDC28A-202ENST00000611852 SERTAD4-AS1Q5TG53 156 aa10.3□□□□□ -0.76
CCDC28A-202ENST00000611852 M0QXV9 152 aa10.29□□□□□ -0.76
CCDC28A-202ENST00000611852 HERV-K104P63124 156 aa10.29□□□□□ -0.76
CCDC28A-202ENST00000611852 SCGB1D4Q6XE38 83 aa10.29□□□□□ -0.76
CCDC28A-202ENST00000611852 PRR3P79522 188 aaKnown RBP10.28□□□□□ -0.76
CCDC28A-202ENST00000611852 HSD52Q0P140 79 aa10.28□□□□□ -0.76
CCDC28A-202ENST00000611852 SND1-IT1Q9HBX3 110 aa10.28□□□□□ -0.76
CCDC28A-202ENST00000611852 LINC00158P58513 81 aa10.27□□□□□ -0.77
CCDC28A-202ENST00000611852 SNHG12Q9BXW3 62 aa10.27□□□□□ -0.77
CCDC28A-202ENST00000611852 PLA2G2DQ9UNK4 145 aa10.27□□□□□ -0.77
CCDC28A-202ENST00000611852 A0A0U1RRA0 63 aa10.26□□□□□ -0.77
CCDC28A-202ENST00000611852 SMIM13P0DJ93 91 aa10.26□□□□□ -0.77
CCDC28A-202ENST00000611852 BATFQ16520 125 aa10.26□□□□□ -0.77
CCDC28A-202ENST00000611852 MEIG1Q5JSS6 88 aa10.26□□□□□ -0.77
CCDC28A-202ENST00000611852 C22orf24Q9Y442 160 aa10.26□□□□□ -0.77
CCDC28A-202ENST00000611852 FLG2Q5D862 2391 aaPredicted RBP10.26□□□□□ -0.77
CCDC28A-202ENST00000611852 HINT1P49773 126 aaPredicted RBP10.25□□□□□ -0.77
CCDC28A-202ENST00000611852 LBHQ53QV2 105 aaPredicted RBP10.25□□□□□ -0.77
CCDC28A-202ENST00000611852 KRTAP11-1Q8IUC1 163 aa10.25□□□□□ -0.77
CCDC28A-202ENST00000611852 PSORS1C2Q9UIG4 136 aa10.24□□□□□ -0.77
CCDC28A-202ENST00000611852 TAL2Q16559 108 aa10.23□□□□□ -0.77
CCDC28A-202ENST00000611852 BVES-AS1Q5T3Y7 98 aa10.23□□□□□ -0.77
CCDC28A-202ENST00000611852 IGLV5-37A0A075B6J1 123 aa10.22□□□□□ -0.77
CCDC28A-202ENST00000611852 UBE2BP63146 152 aa10.22□□□□□ -0.77
CCDC28A-202ENST00000611852 MRPL55Q7Z7F7 128 aaKnown RBP10.22□□□□□ -0.77
CCDC28A-202ENST00000611852 MIR7-3HGQ8N6C7 128 aa10.22□□□□□ -0.77
CCDC28A-202ENST00000611852 HIST1H4GQ99525 98 aa10.22□□□□□ -0.77
CCDC28A-202ENST00000611852 A0A0J9YXY3 114 aa10.2□□□□□ -0.78
CCDC28A-202ENST00000611852 TMEM238C9JI98 176 aa10.2□□□□□ -0.78
CCDC28A-202ENST00000611852 VPREB1P12018 145 aa10.2□□□□□ -0.78
CCDC28A-202ENST00000611852 SRSF9Q13242 221 aaKnown RBP eCLIP10.19□□□□□ -0.78
CCDC28A-202ENST00000611852 COL5A1-AS1Q5SY13 56 aa10.19□□□□□ -0.78
CCDC28A-202ENST00000611852 NKAPP1Q8N9T2 125 aa10.19□□□□□ -0.78
CCDC28A-202ENST00000611852 Q8NDZ9 215 aa10.19□□□□□ -0.78
CCDC28A-202ENST00000611852 SPANXB1Q9NS25 103 aaPredicted RBP10.19□□□□□ -0.78
CCDC28A-202ENST00000611852 RPL24P83731 157 aaKnown RBP10.18□□□□□ -0.78
CCDC28A-202ENST00000611852 C1orf137Q5JT78 98 aa10.18□□□□□ -0.78
CCDC28A-202ENST00000611852 CEND1Q8N111 149 aa10.18□□□□□ -0.78
CCDC28A-202ENST00000611852 LINC00167Q96N53 147 aa10.18□□□□□ -0.78
CCDC28A-202ENST00000611852 DAND5Q8N907 189 aa10.17□□□□□ -0.78
CCDC28A-202ENST00000611852 A6NDN8 102 aa10.17□□□□□ -0.78
CCDC28A-202ENST00000611852 GAGE10A6NGK3 116 aa10.17□□□□□ -0.78
CCDC28A-202ENST00000611852 MYCBP2O75592 4640 aa10.16□□□□□ -0.78
CCDC28A-202ENST00000611852 TIMM17BO60830 172 aa10.16□□□□□ -0.78
CCDC28A-202ENST00000611852 RPL37AP8A6NKH3 93 aa10.15□□□□□ -0.78
CCDC28A-202ENST00000611852 LOC107984156A0A0G2JMH3 177 aa10.14□□□□□ -0.79
CCDC28A-202ENST00000611852 TMEM238LA0A1B0GVL6 79 aa10.14□□□□□ -0.79
CCDC28A-202ENST00000611852 A6NJY4 79 aa10.14□□□□□ -0.79
CCDC28A-202ENST00000611852 IGLV7-43P04211 117 aa10.14□□□□□ -0.79
CCDC28A-202ENST00000611852 ADAMTSL4-AS1Q5T5F5 129 aa10.14□□□□□ -0.79
CCDC28A-202ENST00000611852 ARL17AQ8IVW1 177 aa10.14□□□□□ -0.79
CCDC28A-202ENST00000611852 FXYD2P54710 66 aa10.13□□□□□ -0.79
CCDC28A-202ENST00000611852 SPINK6Q6UWN8 80 aa10.13□□□□□ -0.79
CCDC28A-202ENST00000611852 Q6ZVH6 145 aa10.13□□□□□ -0.79
CCDC28A-202ENST00000611852 LITAFQ99732 161 aa10.12□□□□□ -0.79
CCDC28A-202ENST00000611852 SPANXDQ9BXN6 97 aa10.12□□□□□ -0.79
CCDC28A-202ENST00000611852 SPANXCQ9NY87 97 aa10.12□□□□□ -0.79
CCDC28A-202ENST00000611852 IGKV2-28A0A075B6P5 120 aa10.12□□□□□ -0.79
CCDC28A-202ENST00000611852 IGKV2D-28P01615 120 aa10.12□□□□□ -0.79
CCDC28A-202ENST00000611852 IGLV1-50A0A075B6I6 118 aa10.11□□□□□ -0.79
CCDC28A-202ENST00000611852 PKHD1L1Q86WI1 4243 aa10.1□□□□□ -0.79
CCDC28A-202ENST00000611852 M0R378 163 aa10.1□□□□□ -0.79
CCDC28A-202ENST00000611852 COPS9Q8WXC6 57 aa10.1□□□□□ -0.79
CCDC28A-202ENST00000611852 KRTAP29-1A8MX34 341 aaPredicted RBP10.09□□□□□ -0.79
CCDC28A-202ENST00000611852 EIF4EBP3O60516 100 aaPredicted RBP10.09□□□□□ -0.79
CCDC28A-202ENST00000611852 SOSTDC1Q6X4U4 206 aa10.09□□□□□ -0.79
CCDC28A-202ENST00000611852 NHP2Q9NX24 153 aaKnown RBP10.09□□□□□ -0.79
CCDC28A-202ENST00000611852 NCR3O14931 201 aa10.08□□□□□ -0.8
CCDC28A-202ENST00000611852 IFITM1P13164 125 aa10.08□□□□□ -0.8
CCDC28A-202ENST00000611852 NPC2P61916 151 aa10.08□□□□□ -0.8
CCDC28A-202ENST00000611852 LRP1Q07954 4544 aaKnown RBP10.08□□□□□ -0.8
CCDC28A-202ENST00000611852 BCE1O60756 84 aa10.07□□□□□ -0.8
CCDC28A-202ENST00000611852 OXTP01178 125 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms