RNA–Protein interactions for RNA: ENST00000610489.1

SYNE1-240, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 1,754 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-240ENST00000610489 HERV-K104P63124 156 aa6.58□□□□□ -1.36
SYNE1-240ENST00000610489 ERG28Q9UKR5 140 aa6.58□□□□□ -1.36
SYNE1-240ENST00000610489 COX8AP10176 69 aa6.57□□□□□ -1.36
SYNE1-240ENST00000610489 XGP55808 180 aa6.57□□□□□ -1.36
SYNE1-240ENST00000610489 HAMPP81172 84 aa6.57□□□□□ -1.36
SYNE1-240ENST00000610489 COX17Q14061 63 aa6.57□□□□□ -1.36
SYNE1-240ENST00000610489 GAGE2EQ4V326 116 aa6.57□□□□□ -1.36
SYNE1-240ENST00000610489 SLC25A34Q6PIV7 304 aa6.57□□□□□ -1.36
SYNE1-240ENST00000610489 SCXQ7RTU7 201 aa6.57□□□□□ -1.36
SYNE1-240ENST00000610489 GAGE2DQ9UEU5 116 aa6.57□□□□□ -1.36
SYNE1-240ENST00000610489 PFN2P35080 140 aa6.57□□□□□ -1.36
SYNE1-240ENST00000610489 RYR1P21817 5038 aa6.56□□□□□ -1.36
SYNE1-240ENST00000610489 DLEU1O43261 78 aa6.56□□□□□ -1.36
SYNE1-240ENST00000610489 HNRNPA3P51991 378 aaKnown RBP6.56□□□□□ -1.36
SYNE1-240ENST00000610489 MEIG1Q5JSS6 88 aa6.56□□□□□ -1.36
SYNE1-240ENST00000610489 CIRBP-AS1Q8TBR5 109 aa6.56□□□□□ -1.36
SYNE1-240ENST00000610489 DPH3Q96FX2 82 aa6.56□□□□□ -1.36
SYNE1-240ENST00000610489 A0A087WYN8 130 aa6.55□□□□□ -1.36
SYNE1-240ENST00000610489 BOD1L2Q8IYS8 172 aa6.55□□□□□ -1.36
SYNE1-240ENST00000610489 TTTY13Q9BZ97 58 aa6.55□□□□□ -1.36
SYNE1-240ENST00000610489 ZNF815PA8K554 130 aa6.54□□□□□ -1.36
SYNE1-240ENST00000610489 M0R143 59 aa6.54□□□□□ -1.36
SYNE1-240ENST00000610489 SMIM13P0DJ93 91 aa6.54□□□□□ -1.36
SYNE1-240ENST00000610489 LINC00158P58513 81 aa6.54□□□□□ -1.36
SYNE1-240ENST00000610489 LBHQ53QV2 105 aaPredicted RBP6.54□□□□□ -1.36
SYNE1-240ENST00000610489 C9orf129Q5T035 196 aaKnown RBP6.54□□□□□ -1.36
SYNE1-240ENST00000610489 XAGE1AQ9HD64 81 aa6.54□□□□□ -1.36
SYNE1-240ENST00000610489 PLAC8Q9NZF1 115 aa6.54□□□□□ -1.36
SYNE1-240ENST00000610489 A0A0J9YXY3 114 aa6.54□□□□□ -1.36
SYNE1-240ENST00000610489 A0A0U1RRA0 63 aa6.54□□□□□ -1.36
SYNE1-240ENST00000610489 CTAG1AP78358 180 aa6.54□□□□□ -1.36
SYNE1-240ENST00000610489 A0A1W2PNN7 141 aa6.53□□□□□ -1.36
SYNE1-240ENST00000610489 PCP2Q8IVA1 136 aa6.53□□□□□ -1.36
SYNE1-240ENST00000610489 SNHG12Q9BXW3 62 aa6.53□□□□□ -1.36
SYNE1-240ENST00000610489 SND1-IT1Q9HBX3 110 aa6.53□□□□□ -1.36
SYNE1-240ENST00000610489 FAT1Q14517 4588 aa6.52□□□□□ -1.37
SYNE1-240ENST00000610489 FAM168BA1KXE4 195 aa6.52□□□□□ -1.37
SYNE1-240ENST00000610489 PCP4P48539 62 aa6.52□□□□□ -1.37
SYNE1-240ENST00000610489 EPM2AB3EWF7 344 aa6.52□□□□□ -1.37
SYNE1-240ENST00000610489 MIR7-3HGQ8N6C7 128 aa6.52□□□□□ -1.37
SYNE1-240ENST00000610489 C2orf91Q6ZV80 131 aa6.51□□□□□ -1.37
SYNE1-240ENST00000610489 FAM19A5Q7Z5A7 132 aaPredicted RBP6.51□□□□□ -1.37
SYNE1-240ENST00000610489 KRTAP7-1Q8IUC3 87 aa6.51□□□□□ -1.37
SYNE1-240ENST00000610489 SERTAD4-AS1Q5TG53 156 aa6.5□□□□□ -1.37
SYNE1-240ENST00000610489 SCGB1D4Q6XE38 83 aa6.5□□□□□ -1.37
SYNE1-240ENST00000610489 DAND5Q8N907 189 aa6.5□□□□□ -1.37
SYNE1-240ENST00000610489 HIGD1BQ9P298 99 aa6.5□□□□□ -1.37
SYNE1-240ENST00000610489 VPS13BQ7Z7G8 4022 aa6.5□□□□□ -1.37
SYNE1-240ENST00000610489 TIMM17BO60830 172 aa6.49□□□□□ -1.37
SYNE1-240ENST00000610489 SMR3BP02814 79 aaPredicted RBP6.49□□□□□ -1.37
SYNE1-240ENST00000610489 ADAMTSL4-AS1Q5T5F5 129 aa6.49□□□□□ -1.37
SYNE1-240ENST00000610489 LITAFQ99732 161 aa6.49□□□□□ -1.37
SYNE1-240ENST00000610489 TP73-AS1Q9UF72 201 aa6.49□□□□□ -1.37
SYNE1-240ENST00000610489 SRRM2Q9UQ35 2752 aaKnown RBP6.48□□□□□ -1.37
SYNE1-240ENST00000610489 HERC2O95714 4834 aa6.48□□□□□ -1.37
SYNE1-240ENST00000610489 GAGE10A6NGK3 116 aa6.48□□□□□ -1.37
SYNE1-240ENST00000610489 M0QXV9 152 aa6.48□□□□□ -1.37
SYNE1-240ENST00000610489 TMEM238C9JI98 176 aa6.47□□□□□ -1.37
SYNE1-240ENST00000610489 PHF5AQ7RTV0 110 aaKnown RBP6.47□□□□□ -1.37
SYNE1-240ENST00000610489 IGLV5-37A0A075B6J1 123 aa6.46□□□□□ -1.37
SYNE1-240ENST00000610489 LOC107984156A0A0G2JMH3 177 aa6.46□□□□□ -1.37
SYNE1-240ENST00000610489 VPREB1P12018 145 aa6.46□□□□□ -1.37
SYNE1-240ENST00000610489 HINT1P49773 126 aaPredicted RBP6.46□□□□□ -1.37
SYNE1-240ENST00000610489 RPL24P83731 157 aaKnown RBP6.46□□□□□ -1.37
SYNE1-240ENST00000610489 ARL17AQ8IVW1 177 aa6.46□□□□□ -1.37
SYNE1-240ENST00000610489 Q8NDZ9 215 aa6.46□□□□□ -1.37
SYNE1-240ENST00000610489 C22orf24Q9Y442 160 aa6.46□□□□□ -1.37
SYNE1-240ENST00000610489 HSD52Q0P140 79 aa6.46□□□□□ -1.38
SYNE1-240ENST00000610489 COL5A1-AS1Q5SY13 56 aa6.46□□□□□ -1.38
SYNE1-240ENST00000610489 SOSTDC1Q6X4U4 206 aa6.46□□□□□ -1.38
SYNE1-240ENST00000610489 Q8N1X5 172 aa6.46□□□□□ -1.38
SYNE1-240ENST00000610489 NKAPP1Q8N9T2 125 aa6.46□□□□□ -1.38
SYNE1-240ENST00000610489 C7orf33Q8WU49 177 aa6.46□□□□□ -1.38
SYNE1-240ENST00000610489 SPANXDQ9BXN6 97 aa6.46□□□□□ -1.38
SYNE1-240ENST00000610489 KRTAP17-1Q9BYP8 105 aa6.46□□□□□ -1.38
SYNE1-240ENST00000610489 SPANXCQ9NY87 97 aa6.46□□□□□ -1.38
SYNE1-240ENST00000610489 NPC2P61916 151 aa6.45□□□□□ -1.38
SYNE1-240ENST00000610489 TAL2Q16559 108 aa6.45□□□□□ -1.38
SYNE1-240ENST00000610489 BVES-AS1Q5T3Y7 98 aa6.45□□□□□ -1.38
SYNE1-240ENST00000610489 MRPL55Q7Z7F7 128 aaKnown RBP6.45□□□□□ -1.38
SYNE1-240ENST00000610489 BATFQ16520 125 aa6.44□□□□□ -1.38
SYNE1-240ENST00000610489 LINC00308Q8TCZ7 52 aa6.44□□□□□ -1.38
SYNE1-240ENST00000610489 Q5VSD8 79 aa6.44□□□□□ -1.38
SYNE1-240ENST00000610489 Q6ZVH6 145 aa6.44□□□□□ -1.38
SYNE1-240ENST00000610489 SPANXB1Q9NS25 103 aaPredicted RBP6.43□□□□□ -1.38
SYNE1-240ENST00000610489 NDUFC2O95298 119 aa6.42□□□□□ -1.38
SYNE1-240ENST00000610489 IFITM1P13164 125 aa6.42□□□□□ -1.38
SYNE1-240ENST00000610489 RPL37AP61513 92 aaKnown RBP6.42□□□□□ -1.38
SYNE1-240ENST00000610489 UBE2BP63146 152 aa6.42□□□□□ -1.38
SYNE1-240ENST00000610489 PRR3P79522 188 aaKnown RBP6.42□□□□□ -1.38
SYNE1-240ENST00000610489 LINC00167Q96N53 147 aa6.42□□□□□ -1.38
SYNE1-240ENST00000610489 NCR3O14931 201 aa6.41□□□□□ -1.38
SYNE1-240ENST00000610489 KRTAP11-1Q8IUC1 163 aa6.41□□□□□ -1.38
SYNE1-240ENST00000610489 COPS9Q8WXC6 57 aa6.41□□□□□ -1.38
SYNE1-240ENST00000610489 PPDPFQ9H3Y8 114 aa6.41□□□□□ -1.38
SYNE1-240ENST00000610489 PKHD1L1Q86WI1 4243 aa6.41□□□□□ -1.38
SYNE1-240ENST00000610489 A0A1B0GV90 55 aa6.41□□□□□ -1.38
SYNE1-240ENST00000610489 M0R378 163 aa6.41□□□□□ -1.38
SYNE1-240ENST00000610489 SRSF9Q13242 221 aaKnown RBP eCLIP6.41□□□□□ -1.38
SYNE1-240ENST00000610489 PSORS1C2Q9UIG4 136 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms