RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 ANKRD39Q53RE8 183 aa12.06□□□□□ -0.48
UPF1-209ENST00000600310 TMA7Q9Y2S6 64 aaKnown RBP12.06□□□□□ -0.48
UPF1-209ENST00000600310 MIR7-3HGQ8N6C7 128 aa12.04□□□□□ -0.48
UPF1-209ENST00000600310 C22orf24Q9Y442 160 aa12.04□□□□□ -0.48
UPF1-209ENST00000600310 IGLV5-37A0A075B6J1 123 aa12.03□□□□□ -0.48
UPF1-209ENST00000600310 A0A0J9YXY3 114 aa12.03□□□□□ -0.48
UPF1-209ENST00000600310 SCGB1D1O95968 90 aa12.03□□□□□ -0.48
UPF1-209ENST00000600310 TP73-AS1Q9UF72 201 aa12.03□□□□□ -0.48
UPF1-209ENST00000600310 ZNF815PA8K554 130 aa12.02□□□□□ -0.49
UPF1-209ENST00000600310 LBHQ53QV2 105 aaPredicted RBP12.01□□□□□ -0.49
UPF1-209ENST00000600310 TTTY13Q9BZ97 58 aa12.01□□□□□ -0.49
UPF1-209ENST00000600310 HSBP1L1C9JCN9 74 aa12□□□□□ -0.49
UPF1-209ENST00000600310 VPREB1P12018 145 aa12□□□□□ -0.49
UPF1-209ENST00000600310 PRR3P79522 188 aaKnown RBP12□□□□□ -0.49
UPF1-209ENST00000600310 RPL24P83731 157 aaKnown RBP12□□□□□ -0.49
UPF1-209ENST00000600310 MRPL55Q7Z7F7 128 aaKnown RBP11.99□□□□□ -0.49
UPF1-209ENST00000600310 TIMM17BO60830 172 aa11.98□□□□□ -0.49
UPF1-209ENST00000600310 KRTAP11-1Q8IUC1 163 aa11.98□□□□□ -0.49
UPF1-209ENST00000600310 NKAPP1Q8N9T2 125 aa11.98□□□□□ -0.49
UPF1-209ENST00000600310 LOC107984156A0A0G2JMH3 177 aa11.97□□□□□ -0.49
UPF1-209ENST00000600310 UBE2BP63146 152 aa11.97□□□□□ -0.49
UPF1-209ENST00000600310 ARL17AQ8IVW1 177 aa11.97□□□□□ -0.49
UPF1-209ENST00000600310 DAND5Q8N907 189 aa11.97□□□□□ -0.49
UPF1-209ENST00000600310 Q8NDZ9 215 aa11.97□□□□□ -0.49
UPF1-209ENST00000600310 PSORS1C2Q9UIG4 136 aa11.97□□□□□ -0.49
UPF1-209ENST00000600310 INAFM2P0DMQ5 153 aa11.96□□□□□ -0.49
UPF1-209ENST00000600310 JOSD1Q15040 202 aaPredicted RBP11.96□□□□□ -0.49
UPF1-209ENST00000600310 ADAMTSL4-AS1Q5T5F5 129 aa11.96□□□□□ -0.49
UPF1-209ENST00000600310 PCP2Q8IVA1 136 aa11.96□□□□□ -0.49
UPF1-209ENST00000600310 LITAFQ99732 161 aa11.96□□□□□ -0.49
UPF1-209ENST00000600310 BOD1L2Q8IYS8 172 aa11.95□□□□□ -0.5
UPF1-209ENST00000600310 LINC00167Q96N53 147 aa11.95□□□□□ -0.5
UPF1-209ENST00000600310 GAGE10A6NGK3 116 aa11.92□□□□□ -0.5
UPF1-209ENST00000600310 HNRNPA3P51991 378 aaKnown RBP11.92□□□□□ -0.5
UPF1-209ENST00000600310 SCGB1D4Q6XE38 83 aa11.92□□□□□ -0.5
UPF1-209ENST00000600310 MIEN1Q9BRT3 115 aa11.92□□□□□ -0.5
UPF1-209ENST00000600310 C1orf137Q5JT78 98 aa11.91□□□□□ -0.5
UPF1-209ENST00000600310 SOSTDC1Q6X4U4 206 aa11.91□□□□□ -0.5
UPF1-209ENST00000600310 VPS13BQ7Z7G8 4022 aa11.9□□□□□ -0.5
UPF1-209ENST00000600310 RPL37AP8A6NKH3 93 aa11.9□□□□□ -0.5
UPF1-209ENST00000600310 M0R378 163 aa11.89□□□□□ -0.51
UPF1-209ENST00000600310 EIF4EBP3O60516 100 aaPredicted RBP11.89□□□□□ -0.51
UPF1-209ENST00000600310 HERC1Q15751 4861 aa11.89□□□□□ -0.51
UPF1-209ENST00000600310 TMEM238C9JI98 176 aa11.88□□□□□ -0.51
UPF1-209ENST00000600310 LINC00308Q8TCZ7 52 aa11.88□□□□□ -0.51
UPF1-209ENST00000600310 IGLV1-50A0A075B6I6 118 aa11.87□□□□□ -0.51
UPF1-209ENST00000600310 NDUFC2O95298 119 aa11.87□□□□□ -0.51
UPF1-209ENST00000600310 NPC2P61916 151 aa11.87□□□□□ -0.51
UPF1-209ENST00000600310 SRSF9Q13242 221 aaKnown RBP eCLIP11.87□□□□□ -0.51
UPF1-209ENST00000600310 PYY3Q5JQD4 70 aa11.87□□□□□ -0.51
UPF1-209ENST00000600310 SPANXDQ9BXN6 97 aa11.87□□□□□ -0.51
UPF1-209ENST00000600310 SPANXCQ9NY87 97 aa11.87□□□□□ -0.51
UPF1-209ENST00000600310 IGLV7-43P04211 117 aa11.86□□□□□ -0.51
UPF1-209ENST00000600310 IGKV2-28A0A075B6P5 120 aa11.85□□□□□ -0.51
UPF1-209ENST00000600310 NCR3O14931 201 aa11.85□□□□□ -0.51
UPF1-209ENST00000600310 IGKV2D-28P01615 120 aa11.85□□□□□ -0.51
UPF1-209ENST00000600310 VAMP8Q9BV40 100 aa11.85□□□□□ -0.51
UPF1-209ENST00000600310 PAM16Q9Y3D7 125 aa11.85□□□□□ -0.51
UPF1-209ENST00000600310 TRBV10-2A0A0K0K1G8 114 aa11.84□□□□□ -0.51
UPF1-209ENST00000600310 COX8AP10176 69 aa11.84□□□□□ -0.51
UPF1-209ENST00000600310 SPINK6Q6UWN8 80 aa11.84□□□□□ -0.51
UPF1-209ENST00000600310 Q6ZVH6 145 aa11.84□□□□□ -0.51
UPF1-209ENST00000600310 SPANXB1Q9NS25 103 aaPredicted RBP11.84□□□□□ -0.51
UPF1-209ENST00000600310 SPATA45Q537H7 98 aa11.83□□□□□ -0.52
UPF1-209ENST00000600310 DLEU1O43261 78 aa11.82□□□□□ -0.52
UPF1-209ENST00000600310 BCE1O60756 84 aa11.82□□□□□ -0.52
UPF1-209ENST00000600310 IFITM1P13164 125 aa11.82□□□□□ -0.52
UPF1-209ENST00000600310 PPDPFQ9H3Y8 114 aa11.82□□□□□ -0.52
UPF1-209ENST00000600310 COPS9Q8WXC6 57 aa11.81□□□□□ -0.52
UPF1-209ENST00000600310 SRRM2Q9UQ35 2752 aaKnown RBP11.81□□□□□ -0.52
UPF1-209ENST00000600310 REG3GQ6UW15 175 aa11.8□□□□□ -0.52
UPF1-209ENST00000600310 DMBT1Q9UGM3 2413 aaPredicted RBP11.79□□□□□ -0.52
UPF1-209ENST00000600310 TRBV10-3A0A0K0K1G6 114 aa11.79□□□□□ -0.52
UPF1-209ENST00000600310 C14orf144Q96I85 54 aa11.79□□□□□ -0.52
UPF1-209ENST00000600310 TMEM126AQ9H061 195 aa11.79□□□□□ -0.52
UPF1-209ENST00000600310 ZNF861PO60384 105 aa11.78□□□□□ -0.52
UPF1-209ENST00000600310 KCNQ1DNQ9H478 68 aa11.78□□□□□ -0.52
UPF1-209ENST00000600310 FLG2Q5D862 2391 aaPredicted RBP11.78□□□□□ -0.52
UPF1-209ENST00000600310 PRYO14603 147 aa11.77□□□□□ -0.53
UPF1-209ENST00000600310 DDTP30046 118 aa11.77□□□□□ -0.53
UPF1-209ENST00000600310 MUSTN1Q8IVN3 82 aa11.77□□□□□ -0.53
UPF1-209ENST00000600310 IGLV6-57P01721 117 aa11.76□□□□□ -0.53
UPF1-209ENST00000600310 DIRC1Q969H9 104 aa11.76□□□□□ -0.53
UPF1-209ENST00000600310 RPL28P46779 137 aaKnown RBP11.75□□□□□ -0.53
UPF1-209ENST00000600310 S100A7L2Q5SY68 101 aa11.75□□□□□ -0.53
UPF1-209ENST00000600310 LINC00518Q8N0U6 118 aa11.75□□□□□ -0.53
UPF1-209ENST00000600310 MYCBP2O75592 4640 aa11.74□□□□□ -0.53
UPF1-209ENST00000600310 SPRR1AP35321 89 aa11.74□□□□□ -0.53
UPF1-209ENST00000600310 S100A12P80511 92 aa11.74□□□□□ -0.53
UPF1-209ENST00000600310 SLC25A34Q6PIV7 304 aa11.74□□□□□ -0.53
UPF1-209ENST00000600310 KRTAP13-1Q8IUC0 172 aa11.74□□□□□ -0.53
UPF1-209ENST00000600310 KRTAP29-1A8MX34 341 aaPredicted RBP11.73□□□□□ -0.53
UPF1-209ENST00000600310 UBE2AP49459 152 aa11.73□□□□□ -0.53
UPF1-209ENST00000600310 H0Y9J4 135 aa11.72□□□□□ -0.53
UPF1-209ENST00000600310 OXTP01178 125 aa11.72□□□□□ -0.53
UPF1-209ENST00000600310 FAM19A1Q7Z5A9 133 aa11.72□□□□□ -0.53
UPF1-209ENST00000600310 PKHD1L1Q86WI1 4243 aa11.71□□□□□ -0.53
UPF1-209ENST00000600310 LINC00337Q8N6G1 96 aa11.71□□□□□ -0.53
UPF1-209ENST00000600310 HIGD1BQ9P298 99 aa11.71□□□□□ -0.53
UPF1-209ENST00000600310 KRTAP4-16G5E9R7 235 aaPredicted RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms