RNA–Protein interactions for RNA: ENST00000600286.1

USHBP1-210, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 598 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-210ENST00000600286 VPS13BQ7Z7G8 4022 aa10.53□□□□□ -0.72
USHBP1-210ENST00000600286 TIMM17BO60830 172 aa10.53□□□□□ -0.72
USHBP1-210ENST00000600286 Q8N1X5 172 aa10.53□□□□□ -0.72
USHBP1-210ENST00000600286 NKAPP1Q8N9T2 125 aa10.53□□□□□ -0.72
USHBP1-210ENST00000600286 PLA2G2DQ9UNK4 145 aa10.53□□□□□ -0.72
USHBP1-210ENST00000600286 LINC00528Q8N1L1 170 aa10.52□□□□□ -0.73
USHBP1-210ENST00000600286 FAM168BA1KXE4 195 aa10.51□□□□□ -0.73
USHBP1-210ENST00000600286 TMEM238C9JI98 176 aa10.51□□□□□ -0.73
USHBP1-210ENST00000600286 M0QXV9 152 aa10.51□□□□□ -0.73
USHBP1-210ENST00000600286 COPS9Q8WXC6 57 aa10.51□□□□□ -0.73
USHBP1-210ENST00000600286 TTTY13Q9BZ97 58 aa10.51□□□□□ -0.73
USHBP1-210ENST00000600286 EPM2AB3EWF7 344 aa10.5□□□□□ -0.73
USHBP1-210ENST00000600286 PLA2G1BP04054 148 aaKnown RBP10.5□□□□□ -0.73
USHBP1-210ENST00000600286 UBE2BP63146 152 aa10.5□□□□□ -0.73
USHBP1-210ENST00000600286 PCP2Q8IVA1 136 aa10.5□□□□□ -0.73
USHBP1-210ENST00000600286 S100A12P80511 92 aa10.49□□□□□ -0.73
USHBP1-210ENST00000600286 SPATA45Q537H7 98 aa10.49□□□□□ -0.73
USHBP1-210ENST00000600286 BOD1L2Q8IYS8 172 aa10.49□□□□□ -0.73
USHBP1-210ENST00000600286 TP73-AS1Q9UF72 201 aa10.49□□□□□ -0.73
USHBP1-210ENST00000600286 PAM16Q9Y3D7 125 aa10.49□□□□□ -0.73
USHBP1-210ENST00000600286 C22orf24Q9Y442 160 aa10.49□□□□□ -0.73
USHBP1-210ENST00000600286 PYY3Q5JQD4 70 aa10.48□□□□□ -0.73
USHBP1-210ENST00000600286 SERTAD4-AS1Q5TG53 156 aa10.48□□□□□ -0.73
USHBP1-210ENST00000600286 PHF5AQ7RTV0 110 aaKnown RBP10.48□□□□□ -0.73
USHBP1-210ENST00000600286 DAND5Q8N907 189 aa10.48□□□□□ -0.73
USHBP1-210ENST00000600286 Q6ZVH6 145 aa10.47□□□□□ -0.73
USHBP1-210ENST00000600286 MRPL55Q7Z7F7 128 aaKnown RBP10.47□□□□□ -0.73
USHBP1-210ENST00000600286 IGLV5-37A0A075B6J1 123 aa10.46□□□□□ -0.73
USHBP1-210ENST00000600286 COX8AP10176 69 aa10.46□□□□□ -0.73
USHBP1-210ENST00000600286 RPL37AP61513 92 aaKnown RBP10.46□□□□□ -0.73
USHBP1-210ENST00000600286 LOC107984156A0A0G2JMH3 177 aa10.45□□□□□ -0.74
USHBP1-210ENST00000600286 ADAMTSL4-AS1Q5T5F5 129 aa10.45□□□□□ -0.74
USHBP1-210ENST00000600286 Q5VSD8 79 aa10.45□□□□□ -0.74
USHBP1-210ENST00000600286 ARL17AQ8IVW1 177 aa10.45□□□□□ -0.74
USHBP1-210ENST00000600286 HERC1Q15751 4861 aa10.44□□□□□ -0.74
USHBP1-210ENST00000600286 VPREB1P12018 145 aa10.44□□□□□ -0.74
USHBP1-210ENST00000600286 IFITM1P13164 125 aa10.44□□□□□ -0.74
USHBP1-210ENST00000600286 SRSF9Q13242 221 aaKnown RBP eCLIP10.44□□□□□ -0.74
USHBP1-210ENST00000600286 M0R378 163 aa10.43□□□□□ -0.74
USHBP1-210ENST00000600286 DLEU1O43261 78 aa10.43□□□□□ -0.74
USHBP1-210ENST00000600286 NPC2P61916 151 aa10.43□□□□□ -0.74
USHBP1-210ENST00000600286 SLC25A34Q6PIV7 304 aa10.43□□□□□ -0.74
USHBP1-210ENST00000600286 LINC00308Q8TCZ7 52 aa10.43□□□□□ -0.74
USHBP1-210ENST00000600286 C14orf144Q96I85 54 aa10.43□□□□□ -0.74
USHBP1-210ENST00000600286 SPANXDQ9BXN6 97 aa10.43□□□□□ -0.74
USHBP1-210ENST00000600286 SPANXCQ9NY87 97 aa10.43□□□□□ -0.74
USHBP1-210ENST00000600286 GAGE10A6NGK3 116 aa10.42□□□□□ -0.74
USHBP1-210ENST00000600286 KRTAP7-1Q8IUC3 87 aa10.42□□□□□ -0.74
USHBP1-210ENST00000600286 LINC00167Q96N53 147 aa10.42□□□□□ -0.74
USHBP1-210ENST00000600286 LITAFQ99732 161 aa10.42□□□□□ -0.74
USHBP1-210ENST00000600286 NDUFC2O95298 119 aa10.41□□□□□ -0.74
USHBP1-210ENST00000600286 SPANXB1Q9NS25 103 aaPredicted RBP10.4□□□□□ -0.74
USHBP1-210ENST00000600286 LINC00518Q8N0U6 118 aa10.39□□□□□ -0.75
USHBP1-210ENST00000600286 MYCBP2O75592 4640 aa10.38□□□□□ -0.75
USHBP1-210ENST00000600286 TRBV10-2A0A0K0K1G8 114 aa10.38□□□□□ -0.75
USHBP1-210ENST00000600286 RPL37AP8A6NKH3 93 aa10.38□□□□□ -0.75
USHBP1-210ENST00000600286 NCR3O14931 201 aa10.38□□□□□ -0.75
USHBP1-210ENST00000600286 C1orf137Q5JT78 98 aa10.38□□□□□ -0.75
USHBP1-210ENST00000600286 PSORS1C2Q9UIG4 136 aa10.38□□□□□ -0.75
USHBP1-210ENST00000600286 PRR3P79522 188 aaKnown RBP10.37□□□□□ -0.75
USHBP1-210ENST00000600286 S100A7L2Q5SY68 101 aa10.37□□□□□ -0.75
USHBP1-210ENST00000600286 HIST1H4GQ99525 98 aa10.37□□□□□ -0.75
USHBP1-210ENST00000600286 PPDPFQ9H3Y8 114 aa10.37□□□□□ -0.75
USHBP1-210ENST00000600286 CBY1Q9Y3M2 126 aa10.37□□□□□ -0.75
USHBP1-210ENST00000600286 IGKV2-28A0A075B6P5 120 aa10.36□□□□□ -0.75
USHBP1-210ENST00000600286 IGKV2D-28P01615 120 aa10.36□□□□□ -0.75
USHBP1-210ENST00000600286 SMIM6P0DI80 62 aa10.36□□□□□ -0.75
USHBP1-210ENST00000600286 SOSTDC1Q6X4U4 206 aa10.36□□□□□ -0.75
USHBP1-210ENST00000600286 MUSTN1Q8IVN3 82 aa10.36□□□□□ -0.75
USHBP1-210ENST00000600286 IGLV1-50A0A075B6I6 118 aa10.35□□□□□ -0.75
USHBP1-210ENST00000600286 Q8NDZ9 215 aa10.35□□□□□ -0.75
USHBP1-210ENST00000600286 HIGD1BQ9P298 99 aa10.35□□□□□ -0.75
USHBP1-210ENST00000600286 LOC105371267A0A1B0GV96 52 aa10.33□□□□□ -0.76
USHBP1-210ENST00000600286 DDTP30046 118 aa10.33□□□□□ -0.76
USHBP1-210ENST00000600286 OR13C6PQ8NH95 151 aa10.33□□□□□ -0.76
USHBP1-210ENST00000600286 UQCR10Q9UDW1 63 aa10.32□□□□□ -0.76
USHBP1-210ENST00000600286 SRRM2Q9UQ35 2752 aaKnown RBP10.32□□□□□ -0.76
USHBP1-210ENST00000600286 EIF4EBP3O60516 100 aaPredicted RBP10.31□□□□□ -0.76
USHBP1-210ENST00000600286 INAFM2P0DMQ5 153 aa10.31□□□□□ -0.76
USHBP1-210ENST00000600286 REG3GQ6UW15 175 aa10.31□□□□□ -0.76
USHBP1-210ENST00000600286 TMEM126AQ9H061 195 aa10.31□□□□□ -0.76
USHBP1-210ENST00000600286 TRBV10-3A0A0K0K1G6 114 aa10.3□□□□□ -0.76
USHBP1-210ENST00000600286 PRYO14603 147 aa10.3□□□□□ -0.76
USHBP1-210ENST00000600286 BCE1O60756 84 aa10.3□□□□□ -0.76
USHBP1-210ENST00000600286 IGLV7-43P04211 117 aa10.3□□□□□ -0.76
USHBP1-210ENST00000600286 KRTAP11-1Q8IUC1 163 aa10.3□□□□□ -0.76
USHBP1-210ENST00000600286 UBE2AP49459 152 aa10.29□□□□□ -0.76
USHBP1-210ENST00000600286 TAL2Q16559 108 aa10.29□□□□□ -0.76
USHBP1-210ENST00000600286 TRAV13-2A0A0B4J235 113 aa10.28□□□□□ -0.76
USHBP1-210ENST00000600286 RPL28P46779 137 aaKnown RBP10.28□□□□□ -0.76
USHBP1-210ENST00000600286 KCNQ1DNQ9H478 68 aa10.28□□□□□ -0.76
USHBP1-210ENST00000600286 A6NDN8 102 aa10.27□□□□□ -0.77
USHBP1-210ENST00000600286 IGLV6-57P01721 117 aa10.27□□□□□ -0.77
USHBP1-210ENST00000600286 HINT1P49773 126 aaPredicted RBP10.27□□□□□ -0.77
USHBP1-210ENST00000600286 SPINK6Q6UWN8 80 aa10.27□□□□□ -0.77
USHBP1-210ENST00000600286 ETDCA0A1B0GVM5 59 aa10.26□□□□□ -0.77
USHBP1-210ENST00000600286 KRTAP10-4P60372 401 aaPredicted RBP10.26□□□□□ -0.77
USHBP1-210ENST00000600286 FAM19A1Q7Z5A9 133 aa10.26□□□□□ -0.77
USHBP1-210ENST00000600286 FLG2Q5D862 2391 aaPredicted RBP10.25□□□□□ -0.77
USHBP1-210ENST00000600286 TRAV23DV6A0A075B6W5 121 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms