RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 LINC00158P58513 81 aa11.35□□□□□ -0.59
LIG1-216ENST00000598938 KRTAP10-4P60372 401 aaPredicted RBP11.35□□□□□ -0.59
LIG1-216ENST00000598938 MEIG1Q5JSS6 88 aa11.35□□□□□ -0.59
LIG1-216ENST00000598938 SND1-IT1Q9HBX3 110 aa11.35□□□□□ -0.59
LIG1-216ENST00000598938 PKHD1L1Q86WI1 4243 aa11.34□□□□□ -0.59
LIG1-216ENST00000598938 UBR4Q5T4S7 5183 aa11.34□□□□□ -0.59
LIG1-216ENST00000598938 LINC00587B1AMM8 73 aa11.34□□□□□ -0.59
LIG1-216ENST00000598938 PHF5AQ7RTV0 110 aaKnown RBP11.34□□□□□ -0.59
LIG1-216ENST00000598938 PLA2G2DQ9UNK4 145 aa11.34□□□□□ -0.59
LIG1-216ENST00000598938 TMA7Q9Y2S6 64 aaKnown RBP11.34□□□□□ -0.59
LIG1-216ENST00000598938 A0A0U1RRA0 63 aa11.33□□□□□ -0.6
LIG1-216ENST00000598938 RPL37AP61513 92 aaKnown RBP11.33□□□□□ -0.6
LIG1-216ENST00000598938 ANKRD39Q53RE8 183 aa11.33□□□□□ -0.6
LIG1-216ENST00000598938 M0QXV9 152 aa11.32□□□□□ -0.6
LIG1-216ENST00000598938 IGLV5-37A0A075B6J1 123 aa11.3□□□□□ -0.6
LIG1-216ENST00000598938 A0A0J9YXY3 114 aa11.3□□□□□ -0.6
LIG1-216ENST00000598938 MIR7-3HGQ8N6C7 128 aa11.3□□□□□ -0.6
LIG1-216ENST00000598938 C22orf24Q9Y442 160 aa11.3□□□□□ -0.6
LIG1-216ENST00000598938 SCGB1D1O95968 90 aa11.29□□□□□ -0.6
LIG1-216ENST00000598938 OXTP01178 125 aa11.29□□□□□ -0.6
LIG1-216ENST00000598938 TTTY13Q9BZ97 58 aa11.29□□□□□ -0.6
LIG1-216ENST00000598938 TP73-AS1Q9UF72 201 aa11.29□□□□□ -0.6
LIG1-216ENST00000598938 ZNF815PA8K554 130 aa11.28□□□□□ -0.6
LIG1-216ENST00000598938 VPREB1P12018 145 aa11.27□□□□□ -0.61
LIG1-216ENST00000598938 PRR3P79522 188 aaKnown RBP11.26□□□□□ -0.61
LIG1-216ENST00000598938 LBHQ53QV2 105 aaPredicted RBP11.26□□□□□ -0.61
LIG1-216ENST00000598938 KRTAP11-1Q8IUC1 163 aa11.26□□□□□ -0.61
LIG1-216ENST00000598938 Q8NDZ9 215 aa11.26□□□□□ -0.61
LIG1-216ENST00000598938 HSBP1L1C9JCN9 74 aa11.25□□□□□ -0.61
LIG1-216ENST00000598938 MRPL55Q7Z7F7 128 aaKnown RBP11.25□□□□□ -0.61
LIG1-216ENST00000598938 DAND5Q8N907 189 aa11.25□□□□□ -0.61
LIG1-216ENST00000598938 LOC107984156A0A0G2JMH3 177 aa11.24□□□□□ -0.61
LIG1-216ENST00000598938 TIMM17BO60830 172 aa11.24□□□□□ -0.61
LIG1-216ENST00000598938 RPL24P83731 157 aaKnown RBP11.24□□□□□ -0.61
LIG1-216ENST00000598938 ADAMTSL4-AS1Q5T5F5 129 aa11.24□□□□□ -0.61
LIG1-216ENST00000598938 ARL17AQ8IVW1 177 aa11.24□□□□□ -0.61
LIG1-216ENST00000598938 NKAPP1Q8N9T2 125 aa11.24□□□□□ -0.61
LIG1-216ENST00000598938 LITAFQ99732 161 aa11.24□□□□□ -0.61
LIG1-216ENST00000598938 PSORS1C2Q9UIG4 136 aa11.24□□□□□ -0.61
LIG1-216ENST00000598938 LRP1Q07954 4544 aaKnown RBP11.24□□□□□ -0.61
LIG1-216ENST00000598938 UBE2BP63146 152 aa11.23□□□□□ -0.61
LIG1-216ENST00000598938 JOSD1Q15040 202 aaPredicted RBP11.23□□□□□ -0.61
LIG1-216ENST00000598938 PCP2Q8IVA1 136 aa11.23□□□□□ -0.61
LIG1-216ENST00000598938 LINC00167Q96N53 147 aa11.22□□□□□ -0.61
LIG1-216ENST00000598938 BOD1L2Q8IYS8 172 aa11.21□□□□□ -0.61
LIG1-216ENST00000598938 HNRNPA3P51991 378 aaKnown RBP11.2□□□□□ -0.62
LIG1-216ENST00000598938 GAGE10A6NGK3 116 aa11.19□□□□□ -0.62
LIG1-216ENST00000598938 SOSTDC1Q6X4U4 206 aa11.18□□□□□ -0.62
LIG1-216ENST00000598938 SCGB1D4Q6XE38 83 aa11.18□□□□□ -0.62
LIG1-216ENST00000598938 RPL37AP8A6NKH3 93 aa11.17□□□□□ -0.62
LIG1-216ENST00000598938 EIF4EBP3O60516 100 aaPredicted RBP11.17□□□□□ -0.62
LIG1-216ENST00000598938 C1orf137Q5JT78 98 aa11.17□□□□□ -0.62
LIG1-216ENST00000598938 MIEN1Q9BRT3 115 aa11.17□□□□□ -0.62
LIG1-216ENST00000598938 TMEM238C9JI98 176 aa11.16□□□□□ -0.62
LIG1-216ENST00000598938 M0R378 163 aa11.16□□□□□ -0.62
LIG1-216ENST00000598938 NPC2P61916 151 aa11.16□□□□□ -0.62
LIG1-216ENST00000598938 LINC00308Q8TCZ7 52 aa11.16□□□□□ -0.62
LIG1-216ENST00000598938 SPANXDQ9BXN6 97 aa11.16□□□□□ -0.62
LIG1-216ENST00000598938 SPANXCQ9NY87 97 aa11.16□□□□□ -0.62
LIG1-216ENST00000598938 FAT3Q8TDW7 4589 aa11.15□□□□□ -0.62
LIG1-216ENST00000598938 IGLV1-50A0A075B6I6 118 aa11.15□□□□□ -0.62
LIG1-216ENST00000598938 NDUFC2O95298 119 aa11.15□□□□□ -0.62
LIG1-216ENST00000598938 PYY3Q5JQD4 70 aa11.15□□□□□ -0.62
LIG1-216ENST00000598938 NCR3O14931 201 aa11.14□□□□□ -0.63
LIG1-216ENST00000598938 IGKV2-28A0A075B6P5 120 aa11.13□□□□□ -0.63
LIG1-216ENST00000598938 IGKV2D-28P01615 120 aa11.13□□□□□ -0.63
LIG1-216ENST00000598938 IGLV7-43P04211 117 aa11.13□□□□□ -0.63
LIG1-216ENST00000598938 SRSF9Q13242 221 aaKnown RBP eCLIP11.13□□□□□ -0.63
LIG1-216ENST00000598938 VAMP8Q9BV40 100 aa11.13□□□□□ -0.63
LIG1-216ENST00000598938 PAM16Q9Y3D7 125 aa11.13□□□□□ -0.63
LIG1-216ENST00000598938 TRBV10-2A0A0K0K1G8 114 aa11.12□□□□□ -0.63
LIG1-216ENST00000598938 COX8AP10176 69 aa11.12□□□□□ -0.63
LIG1-216ENST00000598938 SPATA45Q537H7 98 aa11.12□□□□□ -0.63
LIG1-216ENST00000598938 SPANXB1Q9NS25 103 aaPredicted RBP11.12□□□□□ -0.63
LIG1-216ENST00000598938 Q6ZVH6 145 aa11.11□□□□□ -0.63
LIG1-216ENST00000598938 SPINK6Q6UWN8 80 aa11.1□□□□□ -0.63
LIG1-216ENST00000598938 PPDPFQ9H3Y8 114 aa11.1□□□□□ -0.63
LIG1-216ENST00000598938 DLEU1O43261 78 aa11.09□□□□□ -0.63
LIG1-216ENST00000598938 BCE1O60756 84 aa11.09□□□□□ -0.63
LIG1-216ENST00000598938 IFITM1P13164 125 aa11.09□□□□□ -0.63
LIG1-216ENST00000598938 TMEM126AQ9H061 195 aa11.08□□□□□ -0.64
LIG1-216ENST00000598938 TRBV10-3A0A0K0K1G6 114 aa11.07□□□□□ -0.64
LIG1-216ENST00000598938 REG3GQ6UW15 175 aa11.07□□□□□ -0.64
LIG1-216ENST00000598938 COPS9Q8WXC6 57 aa11.07□□□□□ -0.64
LIG1-216ENST00000598938 C14orf144Q96I85 54 aa11.07□□□□□ -0.64
LIG1-216ENST00000598938 PRYO14603 147 aa11.05□□□□□ -0.64
LIG1-216ENST00000598938 DDTP30046 118 aa11.05□□□□□ -0.64
LIG1-216ENST00000598938 MUSTN1Q8IVN3 82 aa11.05□□□□□ -0.64
LIG1-216ENST00000598938 KCNQ1DNQ9H478 68 aa11.05□□□□□ -0.64
LIG1-216ENST00000598938 ZNF861PO60384 105 aa11.04□□□□□ -0.64
LIG1-216ENST00000598938 IGLV6-57P01721 117 aa11.04□□□□□ -0.64
LIG1-216ENST00000598938 SLC25A34Q6PIV7 304 aa11.03□□□□□ -0.64
LIG1-216ENST00000598938 KRTAP13-1Q8IUC0 172 aa11.03□□□□□ -0.64
LIG1-216ENST00000598938 DIRC1Q969H9 104 aa11.03□□□□□ -0.64
LIG1-216ENST00000598938 RPL28P46779 137 aaKnown RBP11.02□□□□□ -0.65
LIG1-216ENST00000598938 S100A7L2Q5SY68 101 aa11.02□□□□□ -0.65
LIG1-216ENST00000598938 H0Y9J4 135 aa11.01□□□□□ -0.65
LIG1-216ENST00000598938 SPRR1AP35321 89 aa11.01□□□□□ -0.65
LIG1-216ENST00000598938 LINC00518Q8N0U6 118 aa11.01□□□□□ -0.65
LIG1-216ENST00000598938 UBE2AP49459 152 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms