RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 HERV-K104P63124 156 aa8.73□□□□□ -1.01
SHKBP1-218ENST00000598907 ZNF815PA8K554 130 aa8.71□□□□□ -1.02
SHKBP1-218ENST00000598907 DLEU1O43261 78 aa8.71□□□□□ -1.02
SHKBP1-218ENST00000598907 TLX1NBP0CAT3 122 aa8.71□□□□□ -1.02
SHKBP1-218ENST00000598907 COX8AP10176 69 aa8.71□□□□□ -1.02
SHKBP1-218ENST00000598907 C9orf116Q5BN46 136 aaPredicted RBP8.71□□□□□ -1.02
SHKBP1-218ENST00000598907 BOD1L2Q8IYS8 172 aa8.71□□□□□ -1.02
SHKBP1-218ENST00000598907 A0A0J9YXY3 114 aa8.7□□□□□ -1.02
SHKBP1-218ENST00000598907 S100A12P80511 92 aa8.7□□□□□ -1.02
SHKBP1-218ENST00000598907 COX17Q14061 63 aa8.69□□□□□ -1.02
SHKBP1-218ENST00000598907 SDIM1Q6ZPB5 146 aa8.69□□□□□ -1.02
SHKBP1-218ENST00000598907 ERG28Q9UKR5 140 aa8.69□□□□□ -1.02
SHKBP1-218ENST00000598907 LINC00587B1AMM8 73 aa8.68□□□□□ -1.02
SHKBP1-218ENST00000598907 LINC00518Q8N0U6 118 aa8.68□□□□□ -1.02
SHKBP1-218ENST00000598907 C14orf144Q96I85 54 aa8.68□□□□□ -1.02
SHKBP1-218ENST00000598907 LOC107984640A0A0U1RRK4 108 aa8.67□□□□□ -1.02
SHKBP1-218ENST00000598907 NDUFC2-KCTD14E9PQ53 114 aa8.67□□□□□ -1.02
SHKBP1-218ENST00000598907 TIMM17BO60830 172 aa8.67□□□□□ -1.02
SHKBP1-218ENST00000598907 KRTAP10-8P60410 259 aa8.67□□□□□ -1.02
SHKBP1-218ENST00000598907 LCE2AQ5TA79 106 aaPredicted RBP8.67□□□□□ -1.02
SHKBP1-218ENST00000598907 DPH3Q96FX2 82 aa8.67□□□□□ -1.02
SHKBP1-218ENST00000598907 C12orf57Q99622 126 aa8.67□□□□□ -1.02
SHKBP1-218ENST00000598907 LITAFQ99732 161 aa8.67□□□□□ -1.02
SHKBP1-218ENST00000598907 SMIM13P0DJ93 91 aa8.66□□□□□ -1.02
SHKBP1-218ENST00000598907 PFN2P35080 140 aa8.66□□□□□ -1.02
SHKBP1-218ENST00000598907 Q6ZRP5 223 aa8.66□□□□□ -1.02
SHKBP1-218ENST00000598907 TP73-AS1Q9UF72 201 aa8.66□□□□□ -1.02
SHKBP1-218ENST00000598907 CHTF8P0CG12 524 aa8.65□□□□□ -1.02
SHKBP1-218ENST00000598907 MEIG1Q5JSS6 88 aa8.65□□□□□ -1.02
SHKBP1-218ENST00000598907 ADAMTSL4-AS1Q5T5F5 129 aa8.65□□□□□ -1.02
SHKBP1-218ENST00000598907 SLC25A34Q6PIV7 304 aa8.65□□□□□ -1.02
SHKBP1-218ENST00000598907 PKIGQ9Y2B9 76 aa8.65□□□□□ -1.02
SHKBP1-218ENST00000598907 A0A087WYN8 130 aa8.64□□□□□ -1.03
SHKBP1-218ENST00000598907 LINC00158P58513 81 aa8.64□□□□□ -1.03
SHKBP1-218ENST00000598907 A0A096LNI7 61 aa8.63□□□□□ -1.03
SHKBP1-218ENST00000598907 PTTG1IPP53801 180 aa8.63□□□□□ -1.03
SHKBP1-218ENST00000598907 CIRBPQ14011 172 aaKnown RBP8.63□□□□□ -1.03
SHKBP1-218ENST00000598907 REG3GQ6UW15 175 aa8.63□□□□□ -1.03
SHKBP1-218ENST00000598907 SCGB1D4Q6XE38 83 aa8.63□□□□□ -1.03
SHKBP1-218ENST00000598907 C7orf33Q8WU49 177 aa8.63□□□□□ -1.03
SHKBP1-218ENST00000598907 LOC107984156A0A0G2JMH3 177 aa8.62□□□□□ -1.03
SHKBP1-218ENST00000598907 A0A0U1RRA0 63 aa8.62□□□□□ -1.03
SHKBP1-218ENST00000598907 PRR3P79522 188 aaKnown RBP8.62□□□□□ -1.03
SHKBP1-218ENST00000598907 RPL18AQ02543 176 aaKnown RBP8.62□□□□□ -1.03
SHKBP1-218ENST00000598907 C2orf91Q6ZV80 131 aa8.62□□□□□ -1.03
SHKBP1-218ENST00000598907 ARL17AQ8IVW1 177 aa8.62□□□□□ -1.03
SHKBP1-218ENST00000598907 MIR7-3HGQ8N6C7 128 aa8.62□□□□□ -1.03
SHKBP1-218ENST00000598907 SPANXB1Q9NS25 103 aaPredicted RBP8.62□□□□□ -1.03
SHKBP1-218ENST00000598907 HIGD1BQ9P298 99 aa8.62□□□□□ -1.03
SHKBP1-218ENST00000598907 TMEM238C9JI98 176 aa8.61□□□□□ -1.03
SHKBP1-218ENST00000598907 GAGE2BQ13066 116 aa8.61□□□□□ -1.03
SHKBP1-218ENST00000598907 GAGE2EQ4V326 116 aa8.61□□□□□ -1.03
SHKBP1-218ENST00000598907 C9orf129Q5T035 196 aaKnown RBP8.61□□□□□ -1.03
SHKBP1-218ENST00000598907 SPANXDQ9BXN6 97 aa8.61□□□□□ -1.03
SHKBP1-218ENST00000598907 SND1-IT1Q9HBX3 110 aa8.61□□□□□ -1.03
SHKBP1-218ENST00000598907 SPANXCQ9NY87 97 aa8.61□□□□□ -1.03
SHKBP1-218ENST00000598907 UQCR10Q9UDW1 63 aa8.61□□□□□ -1.03
SHKBP1-218ENST00000598907 GAGE2DQ9UEU5 116 aa8.61□□□□□ -1.03
SHKBP1-218ENST00000598907 Q6ZVH6 145 aa8.6□□□□□ -1.03
SHKBP1-218ENST00000598907 DAND5Q8N907 189 aa8.6□□□□□ -1.03
SHKBP1-218ENST00000598907 PRO1933Q9H354 126 aa8.6□□□□□ -1.03
SHKBP1-218ENST00000598907 FSIP2Q5CZC0 6907 aa8.6□□□□□ -1.03
SHKBP1-218ENST00000598907 SPACA4Q8TDM5 124 aa8.59□□□□□ -1.03
SHKBP1-218ENST00000598907 MIEN1Q9BRT3 115 aa8.59□□□□□ -1.03
SHKBP1-218ENST00000598907 PPDPFQ9H3Y8 114 aa8.59□□□□□ -1.03
SHKBP1-218ENST00000598907 XAGE1AQ9HD64 81 aa8.59□□□□□ -1.03
SHKBP1-218ENST00000598907 LINC00474Q9P2X8 69 aa8.59□□□□□ -1.03
SHKBP1-218ENST00000598907 IGKV2-24A0A0C4DH68 120 aa8.58□□□□□ -1.04
SHKBP1-218ENST00000598907 EIF4EBP3O60516 100 aaPredicted RBP8.58□□□□□ -1.04
SHKBP1-218ENST00000598907 SOSTDC1Q6X4U4 206 aa8.58□□□□□ -1.04
SHKBP1-218ENST00000598907 LINC00308Q8TCZ7 52 aa8.58□□□□□ -1.04
SHKBP1-218ENST00000598907 KRTAP7-1Q8IUC3 87 aa8.57□□□□□ -1.04
SHKBP1-218ENST00000598907 IFITM1P13164 125 aa8.56□□□□□ -1.04
SHKBP1-218ENST00000598907 A0A1W2PNN7 141 aa8.55□□□□□ -1.04
SHKBP1-218ENST00000598907 MUSTN1Q8IVN3 82 aa8.55□□□□□ -1.04
SHKBP1-218ENST00000598907 Q8NDZ9 215 aa8.55□□□□□ -1.04
SHKBP1-218ENST00000598907 PLAC8Q9NZF1 115 aa8.55□□□□□ -1.04
SHKBP1-218ENST00000598907 IGLV5-37A0A075B6J1 123 aa8.54□□□□□ -1.04
SHKBP1-218ENST00000598907 FAM168BA1KXE4 195 aa8.54□□□□□ -1.04
SHKBP1-218ENST00000598907 TSTD3H0UI37 97 aa8.54□□□□□ -1.04
SHKBP1-218ENST00000598907 SRSF9Q13242 221 aaKnown RBP eCLIP8.54□□□□□ -1.04
SHKBP1-218ENST00000598907 TAL2Q16559 108 aa8.54□□□□□ -1.04
SHKBP1-218ENST00000598907 SPINK6Q6UWN8 80 aa8.54□□□□□ -1.04
SHKBP1-218ENST00000598907 CRCT1Q9UGL9 99 aa8.54□□□□□ -1.04
SHKBP1-218ENST00000598907 NDUFC2O95298 119 aa8.53□□□□□ -1.04
SHKBP1-218ENST00000598907 VPREB1P12018 145 aa8.53□□□□□ -1.04
SHKBP1-218ENST00000598907 NPC2P61916 151 aa8.53□□□□□ -1.04
SHKBP1-218ENST00000598907 COPS9Q8WXC6 57 aa8.53□□□□□ -1.04
SHKBP1-218ENST00000598907 HIST1H4GQ99525 98 aa8.53□□□□□ -1.04
SHKBP1-218ENST00000598907 RPL24P83731 157 aaKnown RBP8.51□□□□□ -1.05
SHKBP1-218ENST00000598907 HSD52Q0P140 79 aa8.5□□□□□ -1.05
SHKBP1-218ENST00000598907 PRR4Q16378 134 aa8.5□□□□□ -1.05
SHKBP1-218ENST00000598907 FAM19A5Q7Z5A7 132 aaPredicted RBP8.49□□□□□ -1.05
SHKBP1-218ENST00000598907 CEND1Q8N111 149 aa8.49□□□□□ -1.05
SHKBP1-218ENST00000598907 C22orf24Q9Y442 160 aa8.49□□□□□ -1.05
SHKBP1-218ENST00000598907 IGKV2-28A0A075B6P5 120 aa8.48□□□□□ -1.05
SHKBP1-218ENST00000598907 TRBV10-2A0A0K0K1G8 114 aa8.48□□□□□ -1.05
SHKBP1-218ENST00000598907 IGKV2D-28P01615 120 aa8.48□□□□□ -1.05
SHKBP1-218ENST00000598907 A4D1N5 150 aa8.47□□□□□ -1.05
SHKBP1-218ENST00000598907 DDTP30046 118 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 119 ms