RNA–Protein interactions for RNA: ENST00000588542.5

DDX39A-207, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 1,297 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-207ENST00000588542 SMIM13P0DJ93 91 aa12.43□□□□□ -0.42
DDX39A-207ENST00000588542 LINC00158P58513 81 aa12.43□□□□□ -0.42
DDX39A-207ENST00000588542 UBE2BP63146 152 aa12.42□□□□□ -0.42
DDX39A-207ENST00000588542 SRSF9Q13242 221 aaKnown RBP eCLIP12.42□□□□□ -0.42
DDX39A-207ENST00000588542 MEIG1Q5JSS6 88 aa12.41□□□□□ -0.42
DDX39A-207ENST00000588542 C1orf137Q5JT78 98 aa12.41□□□□□ -0.42
DDX39A-207ENST00000588542 MRPL55Q7Z7F7 128 aaKnown RBP12.41□□□□□ -0.42
DDX39A-207ENST00000588542 Q8NDZ9 215 aa12.41□□□□□ -0.42
DDX39A-207ENST00000588542 KRTAP29-1A8MX34 341 aaPredicted RBP12.4□□□□□ -0.42
DDX39A-207ENST00000588542 NMUP48645 174 aa12.4□□□□□ -0.42
DDX39A-207ENST00000588542 LBHQ53QV2 105 aaPredicted RBP12.4□□□□□ -0.42
DDX39A-207ENST00000588542 HIST1H2BLQ99880 126 aa12.4□□□□□ -0.42
DDX39A-207ENST00000588542 S100A6P06703 90 aa12.39□□□□□ -0.43
DDX39A-207ENST00000588542 VPREB1P12018 145 aa12.39□□□□□ -0.43
DDX39A-207ENST00000588542 LGALS3P17931 250 aaKnown RBP12.39□□□□□ -0.43
DDX39A-207ENST00000588542 LINC00167Q96N53 147 aa12.39□□□□□ -0.43
DDX39A-207ENST00000588542 DMBT1Q9UGM3 2413 aaPredicted RBP12.39□□□□□ -0.43
DDX39A-207ENST00000588542 LINC00587B1AMM8 73 aa12.37□□□□□ -0.43
DDX39A-207ENST00000588542 SPINK6Q6UWN8 80 aa12.37□□□□□ -0.43
DDX39A-207ENST00000588542 MIR7-3HGQ8N6C7 128 aa12.37□□□□□ -0.43
DDX39A-207ENST00000588542 NKAPP1Q8N9T2 125 aa12.37□□□□□ -0.43
DDX39A-207ENST00000588542 C20orf202A1L168 122 aa12.36□□□□□ -0.43
DDX39A-207ENST00000588542 OXTP01178 125 aa12.36□□□□□ -0.43
DDX39A-207ENST00000588542 IGLV7-43P04211 117 aa12.36□□□□□ -0.43
DDX39A-207ENST00000588542 S100A2P29034 98 aa12.36□□□□□ -0.43
DDX39A-207ENST00000588542 SNRPEP62304 92 aaKnown RBP12.36□□□□□ -0.43
DDX39A-207ENST00000588542 IGKV2D-26A0A0A0MRZ7 120 aa12.35□□□□□ -0.43
DDX39A-207ENST00000588542 GAGE10A6NGK3 116 aa12.35□□□□□ -0.43
DDX39A-207ENST00000588542 RPL37AP8A6NKH3 93 aa12.34□□□□□ -0.43
DDX39A-207ENST00000588542 RPL24P83731 157 aaKnown RBP12.34□□□□□ -0.43
DDX39A-207ENST00000588542 HERC1Q15751 4861 aa12.33□□□□□ -0.44
DDX39A-207ENST00000588542 C5orf52A6NGY3 159 aa12.33□□□□□ -0.44
DDX39A-207ENST00000588542 ATOH7Q8N100 152 aa12.33□□□□□ -0.44
DDX39A-207ENST00000588542 A0A0J9YXY3 114 aa12.32□□□□□ -0.44
DDX39A-207ENST00000588542 DAND5Q8N907 189 aa12.32□□□□□ -0.44
DDX39A-207ENST00000588542 LOC107984156A0A0G2JMH3 177 aa12.3□□□□□ -0.44
DDX39A-207ENST00000588542 J3QL48 77 aa12.3□□□□□ -0.44
DDX39A-207ENST00000588542 ANKRD39Q53RE8 183 aa12.3□□□□□ -0.44
DDX39A-207ENST00000588542 ARL17AQ8IVW1 177 aa12.3□□□□□ -0.44
DDX39A-207ENST00000588542 TTTY13Q9BZ97 58 aa12.3□□□□□ -0.44
DDX39A-207ENST00000588542 BOD1L2Q8IYS8 172 aa12.29□□□□□ -0.44
DDX39A-207ENST00000588542 TNXBP22105 4242 aa12.29□□□□□ -0.44
DDX39A-207ENST00000588542 IGLV1-50A0A075B6I6 118 aa12.28□□□□□ -0.44
DDX39A-207ENST00000588542 IGKV2-28A0A075B6P5 120 aa12.28□□□□□ -0.44
DDX39A-207ENST00000588542 IGKV2D-28P01615 120 aa12.28□□□□□ -0.44
DDX39A-207ENST00000588542 AKR1D1P51857 326 aa12.28□□□□□ -0.44
DDX39A-207ENST00000588542 ADAMTSL4-AS1Q5T5F5 129 aa12.28□□□□□ -0.44
DDX39A-207ENST00000588542 ZNF815PA8K554 130 aa12.26□□□□□ -0.45
DDX39A-207ENST00000588542 BCE1O60756 84 aa12.26□□□□□ -0.45
DDX39A-207ENST00000588542 MT1HL1P0DM35 61 aa12.26□□□□□ -0.45
DDX39A-207ENST00000588542 LITAFQ99732 161 aa12.26□□□□□ -0.45
DDX39A-207ENST00000588542 M0R378 163 aa12.25□□□□□ -0.45
DDX39A-207ENST00000588542 REG3GQ6UW15 175 aa12.25□□□□□ -0.45
DDX39A-207ENST00000588542 DIRC1Q969H9 104 aa12.25□□□□□ -0.45
DDX39A-207ENST00000588542 H0Y9J4 135 aa12.24□□□□□ -0.45
DDX39A-207ENST00000588542 ZNF861PO60384 105 aa12.24□□□□□ -0.45
DDX39A-207ENST00000588542 EIF4EBP3O60516 100 aaPredicted RBP12.24□□□□□ -0.45
DDX39A-207ENST00000588542 SOSTDC1Q6X4U4 206 aa12.24□□□□□ -0.45
DDX39A-207ENST00000588542 LINC01600Q96MT4 127 aa12.24□□□□□ -0.45
DDX39A-207ENST00000588542 NCR3O14931 201 aa12.23□□□□□ -0.45
DDX39A-207ENST00000588542 TIMM17BO60830 172 aa12.23□□□□□ -0.45
DDX39A-207ENST00000588542 TMEM238C9JI98 176 aa12.22□□□□□ -0.45
DDX39A-207ENST00000588542 NPC2P61916 151 aa12.21□□□□□ -0.45
DDX39A-207ENST00000588542 TMEM126AQ9H061 195 aa12.21□□□□□ -0.45
DDX39A-207ENST00000588542 KRTAP13-1Q8IUC0 172 aa12.2□□□□□ -0.46
DDX39A-207ENST00000588542 PCP2Q8IVA1 136 aa12.2□□□□□ -0.46
DDX39A-207ENST00000588542 MIEN1Q9BRT3 115 aa12.2□□□□□ -0.46
DDX39A-207ENST00000588542 NDUFC2O95298 119 aa12.18□□□□□ -0.46
DDX39A-207ENST00000588542 RPL28P46779 137 aaKnown RBP12.18□□□□□ -0.46
DDX39A-207ENST00000588542 LINC00308Q8TCZ7 52 aa12.17□□□□□ -0.46
DDX39A-207ENST00000588542 TRBV10-3A0A0K0K1G6 114 aa12.16□□□□□ -0.46
DDX39A-207ENST00000588542 TRBV10-2A0A0K0K1G8 114 aa12.16□□□□□ -0.46
DDX39A-207ENST00000588542 SCGB1D1O95968 90 aa12.16□□□□□ -0.46
DDX39A-207ENST00000588542 KRTAP1-4P0C5Y4 121 aa12.16□□□□□ -0.46
DDX39A-207ENST00000588542 KRTAP10-8P60410 259 aa12.16□□□□□ -0.46
DDX39A-207ENST00000588542 SPANXB1Q9NS25 103 aaPredicted RBP12.16□□□□□ -0.46
DDX39A-207ENST00000588542 UBE2AP49459 152 aa12.15□□□□□ -0.46
DDX39A-207ENST00000588542 KCNQ1DNQ9H478 68 aa12.15□□□□□ -0.46
DDX39A-207ENST00000588542 PRYO14603 147 aa12.14□□□□□ -0.47
DDX39A-207ENST00000588542 SCGB1D4Q6XE38 83 aa12.14□□□□□ -0.47
DDX39A-207ENST00000588542 SPANXDQ9BXN6 97 aa12.14□□□□□ -0.47
DDX39A-207ENST00000588542 SPANXCQ9NY87 97 aa12.14□□□□□ -0.47
DDX39A-207ENST00000588542 HSBP1L1C9JCN9 74 aa12.13□□□□□ -0.47
DDX39A-207ENST00000588542 PRLHP81277 87 aa12.13□□□□□ -0.47
DDX39A-207ENST00000588542 FAM19A1Q7Z5A9 133 aa12.13□□□□□ -0.47
DDX39A-207ENST00000588542 SPRR1AP35321 89 aa12.12□□□□□ -0.47
DDX39A-207ENST00000588542 DDTP30046 118 aa12.11□□□□□ -0.47
DDX39A-207ENST00000588542 KRTAP4-16G5E9R7 235 aaPredicted RBP12.1□□□□□ -0.47
DDX39A-207ENST00000588542 IGLV6-57P01721 117 aa12.1□□□□□ -0.47
DDX39A-207ENST00000588542 LINC00337Q8N6G1 96 aa12.08□□□□□ -0.48
DDX39A-207ENST00000588542 PRR26Q8N8Z3 221 aa12.08□□□□□ -0.48
DDX39A-207ENST00000588542 TMA7Q9Y2S6 64 aaKnown RBP12.08□□□□□ -0.48
DDX39A-207ENST00000588542 S100A7L2Q5SY68 101 aa12.06□□□□□ -0.48
DDX39A-207ENST00000588542 Q6ZVH6 145 aa12.06□□□□□ -0.48
DDX39A-207ENST00000588542 IFITM1P13164 125 aa12.05□□□□□ -0.48
DDX39A-207ENST00000588542 JOSD1Q15040 202 aaPredicted RBP12.05□□□□□ -0.48
DDX39A-207ENST00000588542 PPDPFQ9H3Y8 114 aa12.05□□□□□ -0.48
DDX39A-207ENST00000588542 MUSTN1Q8IVN3 82 aa12.04□□□□□ -0.48
DDX39A-207ENST00000588542 ETDCA0A1B0GVM5 59 aa12.03□□□□□ -0.48
DDX39A-207ENST00000588542 S100A12P80511 92 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms