RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 MSMBP08118 114 aa1.56□□□□□ -2.16
VPS4B-203ENST00000588323 CTSGP08311 255 aa1.56□□□□□ -2.16
VPS4B-203ENST00000588323 ASAH2BP0C7U1 165 aa1.56□□□□□ -2.16
VPS4B-203ENST00000588323 SUPT4H1P63272 117 aaKnown RBP1.56□□□□□ -2.16
VPS4B-203ENST00000588323 LINC00269Q8N2A0 174 aa1.56□□□□□ -2.16
VPS4B-203ENST00000588323 Q8N2B8 174 aa1.56□□□□□ -2.16
VPS4B-203ENST00000588323 AQP3Q92482 292 aa1.56□□□□□ -2.16
VPS4B-203ENST00000588323 TMEM141Q96I45 108 aa1.56□□□□□ -2.16
VPS4B-203ENST00000588323 Q96M85 177 aa1.56□□□□□ -2.16
VPS4B-203ENST00000588323 AMELYQ99218 206 aa1.56□□□□□ -2.16
VPS4B-203ENST00000588323 RETNLBQ9BQ08 111 aa1.56□□□□□ -2.16
VPS4B-203ENST00000588323 LINC00467Q9BRT7 94 aa1.56□□□□□ -2.16
VPS4B-203ENST00000588323 BPESC1Q9GZL8 116 aa1.56□□□□□ -2.16
VPS4B-203ENST00000588323 HEATR5AQ86XA9 2040 aa1.56□□□□□ -2.16
VPS4B-203ENST00000588323 DNAH9Q9NYC9 4486 aa1.55□□□□□ -2.16
VPS4B-203ENST00000588323 STARD9Q9P2P6 4700 aa1.55□□□□□ -2.16
VPS4B-203ENST00000588323 IGLV10-54A0A075B6I4 117 aa1.55□□□□□ -2.16
VPS4B-203ENST00000588323 TRAV7A0A075B6U4 112 aa1.55□□□□□ -2.16
VPS4B-203ENST00000588323 hDV103S1A0JD37 113 aa1.55□□□□□ -2.16
VPS4B-203ENST00000588323 SNRPGP15A8MWD9 76 aa1.55□□□□□ -2.16
VPS4B-203ENST00000588323 PRB4P10163 310 aaPredicted RBP1.55□□□□□ -2.16
VPS4B-203ENST00000588323 RPL28P46779 137 aaKnown RBP1.55□□□□□ -2.16
VPS4B-203ENST00000588323 ASB16-AS1Q495Z4 193 aa1.55□□□□□ -2.16
VPS4B-203ENST00000588323 LYZL1Q6UWQ5 148 aa1.55□□□□□ -2.16
VPS4B-203ENST00000588323 CYP2G1PQ6ZSU1 146 aa1.55□□□□□ -2.16
VPS4B-203ENST00000588323 FP248Q71RG6 208 aaPredicted RBP1.55□□□□□ -2.16
VPS4B-203ENST00000588323 LINC00643Q86TS7 51 aa1.55□□□□□ -2.16
VPS4B-203ENST00000588323 DYNAPQ8N1N2 210 aa1.55□□□□□ -2.16
VPS4B-203ENST00000588323 Q8N8P6 123 aa1.55□□□□□ -2.16
VPS4B-203ENST00000588323 MRPL35Q9NZE8 188 aaKnown RBP1.55□□□□□ -2.16
VPS4B-203ENST00000588323 FRAS1Q86XX4 4008 aa1.55□□□□□ -2.16
VPS4B-203ENST00000588323 EML6Q6ZMW3 1958 aa1.54□□□□□ -2.16
VPS4B-203ENST00000588323 TRAV14DV4A0A0A6YYC5 116 aa1.54□□□□□ -2.16
VPS4B-203ENST00000588323 TRAV3A0A0B4J244 114 aa1.54□□□□□ -2.16
VPS4B-203ENST00000588323 A0A0G2JND7 137 aa1.54□□□□□ -2.16
VPS4B-203ENST00000588323 CLPSL1A2RUU4 121 aa1.54□□□□□ -2.16
VPS4B-203ENST00000588323 ODF3BA8MYP8 253 aa1.54□□□□□ -2.16
VPS4B-203ENST00000588323 E7EQL1 145 aa1.54□□□□□ -2.16
VPS4B-203ENST00000588323 H3BVH4 76 aa1.54□□□□□ -2.16
VPS4B-203ENST00000588323 K7EIL1 84 aa1.54□□□□□ -2.16
VPS4B-203ENST00000588323 CRPP02741 224 aa1.54□□□□□ -2.16
VPS4B-203ENST00000588323 MGST1P10620 155 aaKnown RBP1.54□□□□□ -2.16
VPS4B-203ENST00000588323 RHOHQ15669 191 aa1.54□□□□□ -2.16
VPS4B-203ENST00000588323 ESRGQ1W209 222 aa1.54□□□□□ -2.16
VPS4B-203ENST00000588323 TMEM170BQ5T4T1 132 aa1.54□□□□□ -2.16
VPS4B-203ENST00000588323 NCBP2-AS2Q69YL0 99 aa1.54□□□□□ -2.16
VPS4B-203ENST00000588323 XAF1Q6GPH4 301 aa1.54□□□□□ -2.16
VPS4B-203ENST00000588323 PATE2Q6UY27 113 aa1.54□□□□□ -2.16
VPS4B-203ENST00000588323 PFN4Q8NHR9 129 aa1.54□□□□□ -2.16
VPS4B-203ENST00000588323 FAM103A1Q9BTL3 118 aaKnown RBP1.54□□□□□ -2.16
VPS4B-203ENST00000588323 DYNLRB1Q9NP97 96 aa1.54□□□□□ -2.16
VPS4B-203ENST00000588323 NDUFA12Q9UI09 145 aa1.54□□□□□ -2.16
VPS4B-203ENST00000588323 CSMD3Q7Z407 3707 aa1.53□□□□□ -2.16
VPS4B-203ENST00000588323 TRAV13-2A0A0B4J235 113 aa1.53□□□□□ -2.16
VPS4B-203ENST00000588323 A0A1B0GWA3 101 aa1.53□□□□□ -2.16
VPS4B-203ENST00000588323 F2Z2F3 143 aa1.53□□□□□ -2.16
VPS4B-203ENST00000588323 H7C2G1 150 aa1.53□□□□□ -2.16
VPS4B-203ENST00000588323 FXYD1O00168 92 aa1.53□□□□□ -2.16
VPS4B-203ENST00000588323 NUPR1O60356 82 aa1.53□□□□□ -2.16
VPS4B-203ENST00000588323 SNRNP200O75643 2136 aaKnown RBP1.53□□□□□ -2.16
VPS4B-203ENST00000588323 DEFA4P12838 97 aa1.53□□□□□ -2.16
VPS4B-203ENST00000588323 FXYD2P54710 66 aa1.53□□□□□ -2.16
VPS4B-203ENST00000588323 KRTAP12-3P60328 96 aa1.53□□□□□ -2.16
VPS4B-203ENST00000588323 Q1T7F1 81 aa1.53□□□□□ -2.16
VPS4B-203ENST00000588323 CFAP126Q5VTH2 177 aa1.53□□□□□ -2.16
VPS4B-203ENST00000588323 CASC2Q6XLA1 102 aa1.53□□□□□ -2.16
VPS4B-203ENST00000588323 LINC00304Q8N9R0 145 aa1.53□□□□□ -2.16
VPS4B-203ENST00000588323 PSORS1C2Q9UIG4 136 aa1.53□□□□□ -2.16
VPS4B-203ENST00000588323 WNK2Q9Y3S1 2297 aa1.53□□□□□ -2.16
VPS4B-203ENST00000588323 PLXNB1O43157 2135 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 NINQ8N4C6 2090 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 IGKV2D-26A0A0A0MRZ7 120 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 A6NN06 94 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 ZNF815PA8K554 130 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 IBA57-AS1B1ANH7 110 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 BCE1O60756 84 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 PRH1P02810 166 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 COX8AP10176 69 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 C9orf116Q5BN46 136 aaPredicted RBP1.52□□□□□ -2.17
VPS4B-203ENST00000588323 DEFB121Q5J5C9 76 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 C10orf128Q5T292 105 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 FAM27BQ5VT28 67 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 SLC48A1Q6P1K1 146 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 SFTA2Q6UW10 78 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 ZNF818PQ6ZRF7 136 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 DEFB107AQ8IZN7 70 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 TOMM5Q8N4H5 51 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 Q8NDZ9 215 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 WFDC9Q8NEX5 89 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 TIMM21Q9BVV7 248 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 CYP4F30PQ9H0H9 118 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 C14orf132Q9NPU4 83 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 HIGD1BQ9P298 99 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 LINC00474Q9P2X8 69 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 PRO1854Q9UHT4 67 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 V9GYH0 126 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 MED12LQ86YW9 2145 aa1.52□□□□□ -2.17
VPS4B-203ENST00000588323 KMT2AQ03164 3969 aa1.51□□□□□ -2.17
VPS4B-203ENST00000588323 IGLV3-9A0A075B6K5 115 aa1.51□□□□□ -2.17
VPS4B-203ENST00000588323 IGHV3-64A0A075B6Q5 118 aa1.51□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms