RNA–Protein interactions for RNA: ENST00000578995.5

SMARCE1-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 2

Gene SMARCE1, Length 534 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-215ENST00000578995 C9orf116Q5BN46 136 aaPredicted RBP2.37□□□□□ -2.03
SMARCE1-215ENST00000578995 C9orf129Q5T035 196 aaKnown RBP2.37□□□□□ -2.03
SMARCE1-215ENST00000578995 PET117Q6UWS5 81 aa2.37□□□□□ -2.03
SMARCE1-215ENST00000578995 KRTAP11-1Q8IUC1 163 aa2.37□□□□□ -2.03
SMARCE1-215ENST00000578995 Q8NDZ9 215 aa2.37□□□□□ -2.03
SMARCE1-215ENST00000578995 COX7B2Q8TF08 81 aa2.37□□□□□ -2.03
SMARCE1-215ENST00000578995 CAMK2N2Q96S95 79 aa2.37□□□□□ -2.03
SMARCE1-215ENST00000578995 GEMIN7Q9H840 131 aaKnown RBP2.37□□□□□ -2.03
SMARCE1-215ENST00000578995 PLAC8Q9NZF1 115 aa2.37□□□□□ -2.03
SMARCE1-215ENST00000578995 HSPB8Q9UJY1 196 aa2.37□□□□□ -2.03
SMARCE1-215ENST00000578995 A0A087WYN8 130 aa2.36□□□□□ -2.03
SMARCE1-215ENST00000578995 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.36□□□□□ -2.03
SMARCE1-215ENST00000578995 A0A1W2PNN7 141 aa2.36□□□□□ -2.03
SMARCE1-215ENST00000578995 FAM168BA1KXE4 195 aa2.36□□□□□ -2.03
SMARCE1-215ENST00000578995 NDUFC2-KCTD14E9PQ53 114 aa2.36□□□□□ -2.03
SMARCE1-215ENST00000578995 ZNF561-AS1K7EIQ3 104 aa2.36□□□□□ -2.03
SMARCE1-215ENST00000578995 NDUFA1O15239 70 aa2.36□□□□□ -2.03
SMARCE1-215ENST00000578995 DPM2O94777 84 aa2.36□□□□□ -2.03
SMARCE1-215ENST00000578995 IGKCP01834 107 aa2.36□□□□□ -2.03
SMARCE1-215ENST00000578995 PLNP26678 52 aa2.36□□□□□ -2.03
SMARCE1-215ENST00000578995 SNRPEP62304 92 aaKnown RBP2.36□□□□□ -2.03
SMARCE1-215ENST00000578995 LITAFQ99732 161 aa2.36□□□□□ -2.03
SMARCE1-215ENST00000578995 TNXBP22105 4242 aa2.36□□□□□ -2.03
SMARCE1-215ENST00000578995 FLG2Q5D862 2391 aaPredicted RBP2.36□□□□□ -2.03
SMARCE1-215ENST00000578995 LOC107984640A0A0U1RRK4 108 aa2.35□□□□□ -2.03
SMARCE1-215ENST00000578995 E9PLD3 99 aa2.35□□□□□ -2.03
SMARCE1-215ENST00000578995 H0Y8G0 127 aa2.35□□□□□ -2.03
SMARCE1-215ENST00000578995 H3BRM9 83 aa2.35□□□□□ -2.03
SMARCE1-215ENST00000578995 LEPROTO15243 131 aa2.35□□□□□ -2.03
SMARCE1-215ENST00000578995 CXCL5P42830 114 aa2.35□□□□□ -2.03
SMARCE1-215ENST00000578995 HNRNPA3P51991 378 aaKnown RBP2.35□□□□□ -2.03
SMARCE1-215ENST00000578995 MAJINQ3KP22 176 aa2.35□□□□□ -2.03
SMARCE1-215ENST00000578995 TMEM170BQ5T4T1 132 aa2.35□□□□□ -2.03
SMARCE1-215ENST00000578995 SERTAD4-AS1Q5TG53 156 aa2.35□□□□□ -2.03
SMARCE1-215ENST00000578995 STPG4Q8N801 248 aa2.35□□□□□ -2.03
SMARCE1-215ENST00000578995 MAP1LC3CQ9BXW4 147 aa2.35□□□□□ -2.03
SMARCE1-215ENST00000578995 TTTY13Q9BZ97 58 aa2.35□□□□□ -2.03
SMARCE1-215ENST00000578995 TOMM7Q9P0U1 55 aa2.35□□□□□ -2.03
SMARCE1-215ENST00000578995 IGLV5-37A0A075B6J1 123 aa2.34□□□□□ -2.03
SMARCE1-215ENST00000578995 IGKV2-24A0A0C4DH68 120 aa2.34□□□□□ -2.03
SMARCE1-215ENST00000578995 LOC107984156A0A0G2JMH3 177 aa2.34□□□□□ -2.03
SMARCE1-215ENST00000578995 J3QQQ9 107 aa2.34□□□□□ -2.03
SMARCE1-215ENST00000578995 SMR3BP02814 79 aaPredicted RBP2.34□□□□□ -2.03
SMARCE1-215ENST00000578995 KRTDAPP60985 99 aa2.34□□□□□ -2.03
SMARCE1-215ENST00000578995 C6orf226Q5I0X4 101 aa2.34□□□□□ -2.03
SMARCE1-215ENST00000578995 SOSTDC1Q6X4U4 206 aa2.34□□□□□ -2.03
SMARCE1-215ENST00000578995 ARL17AQ8IVW1 177 aa2.34□□□□□ -2.03
SMARCE1-215ENST00000578995 TP73-AS1Q9UF72 201 aa2.34□□□□□ -2.03
SMARCE1-215ENST00000578995 ERG28Q9UKR5 140 aa2.34□□□□□ -2.03
SMARCE1-215ENST00000578995 A0A0J9YXY3 114 aa2.33□□□□□ -2.04
SMARCE1-215ENST00000578995 PRSS2P07478 247 aa2.33□□□□□ -2.04
SMARCE1-215ENST00000578995 VPREB1P12018 145 aa2.33□□□□□ -2.04
SMARCE1-215ENST00000578995 CKS1BP61024 79 aa2.33□□□□□ -2.04
SMARCE1-215ENST00000578995 RPL18AQ02543 176 aaKnown RBP2.33□□□□□ -2.04
SMARCE1-215ENST00000578995 GAGE2BQ13066 116 aa2.33□□□□□ -2.04
SMARCE1-215ENST00000578995 ADAMTSL4-AS1Q5T5F5 129 aa2.33□□□□□ -2.04
SMARCE1-215ENST00000578995 Q5VSD8 79 aa2.33□□□□□ -2.04
SMARCE1-215ENST00000578995 ATOH7Q8N100 152 aa2.33□□□□□ -2.04
SMARCE1-215ENST00000578995 PLEKHB2Q96CS7 222 aa2.33□□□□□ -2.04
SMARCE1-215ENST00000578995 SND1-IT1Q9HBX3 110 aa2.33□□□□□ -2.04
SMARCE1-215ENST00000578995 XAGE1AQ9HD64 81 aa2.33□□□□□ -2.04
SMARCE1-215ENST00000578995 NDUFA12Q9UI09 145 aa2.33□□□□□ -2.04
SMARCE1-215ENST00000578995 S100A6P06703 90 aa2.32□□□□□ -2.04
SMARCE1-215ENST00000578995 SMIM13P0DJ93 91 aa2.32□□□□□ -2.04
SMARCE1-215ENST00000578995 NMUP48645 174 aa2.32□□□□□ -2.04
SMARCE1-215ENST00000578995 HERV-K104P63124 156 aa2.32□□□□□ -2.04
SMARCE1-215ENST00000578995 PRR3P79522 188 aaKnown RBP2.32□□□□□ -2.04
SMARCE1-215ENST00000578995 SRSF9Q13242 221 aaKnown RBP eCLIP2.32□□□□□ -2.04
SMARCE1-215ENST00000578995 COX17Q14061 63 aa2.32□□□□□ -2.04
SMARCE1-215ENST00000578995 JOSD1Q15040 202 aaPredicted RBP2.32□□□□□ -2.04
SMARCE1-215ENST00000578995 GAGE2EQ4V326 116 aa2.32□□□□□ -2.04
SMARCE1-215ENST00000578995 PYY3Q5JQD4 70 aa2.32□□□□□ -2.04
SMARCE1-215ENST00000578995 SFTA2Q6UW10 78 aa2.32□□□□□ -2.04
SMARCE1-215ENST00000578995 PHF5AQ7RTV0 110 aaKnown RBP2.32□□□□□ -2.04
SMARCE1-215ENST00000578995 KRTAP13-1Q8IUC0 172 aa2.32□□□□□ -2.04
SMARCE1-215ENST00000578995 PCP2Q8IVA1 136 aa2.32□□□□□ -2.04
SMARCE1-215ENST00000578995 LINC00474Q9P2X8 69 aa2.32□□□□□ -2.04
SMARCE1-215ENST00000578995 GAGE2DQ9UEU5 116 aa2.32□□□□□ -2.04
SMARCE1-215ENST00000578995 PKIGQ9Y2B9 76 aa2.32□□□□□ -2.04
SMARCE1-215ENST00000578995 MYMXA0A1B0GTQ4 84 aa2.31□□□□□ -2.04
SMARCE1-215ENST00000578995 M0QXV9 152 aa2.31□□□□□ -2.04
SMARCE1-215ENST00000578995 TIMM17BO60830 172 aa2.31□□□□□ -2.04
SMARCE1-215ENST00000578995 S100A2P29034 98 aa2.31□□□□□ -2.04
SMARCE1-215ENST00000578995 PFN2P35080 140 aa2.31□□□□□ -2.04
SMARCE1-215ENST00000578995 HERVK_113P61574 105 aa2.31□□□□□ -2.04
SMARCE1-215ENST00000578995 FAM19A5Q7Z5A7 132 aaPredicted RBP2.31□□□□□ -2.04
SMARCE1-215ENST00000578995 MIR7-3HGQ8N6C7 128 aa2.31□□□□□ -2.04
SMARCE1-215ENST00000578995 DAND5Q8N907 189 aa2.31□□□□□ -2.04
SMARCE1-215ENST00000578995 C7orf33Q8WU49 177 aa2.31□□□□□ -2.04
SMARCE1-215ENST00000578995 PPDPFQ9H3Y8 114 aa2.31□□□□□ -2.04
SMARCE1-215ENST00000578995 PSORS1C2Q9UIG4 136 aa2.31□□□□□ -2.04
SMARCE1-215ENST00000578995 TMA7Q9Y2S6 64 aaKnown RBP2.31□□□□□ -2.04
SMARCE1-215ENST00000578995 C22orf24Q9Y442 160 aa2.31□□□□□ -2.04
SMARCE1-215ENST00000578995 HERC1Q15751 4861 aa2.31□□□□□ -2.04
SMARCE1-215ENST00000578995 IGKV2-28A0A075B6P5 120 aa2.3□□□□□ -2.04
SMARCE1-215ENST00000578995 A0A0U1RRA0 63 aa2.3□□□□□ -2.04
SMARCE1-215ENST00000578995 LOC105371267A0A1B0GV96 52 aa2.3□□□□□ -2.04
SMARCE1-215ENST00000578995 C20orf202A1L168 122 aa2.3□□□□□ -2.04
SMARCE1-215ENST00000578995 KRTAP4-16G5E9R7 235 aaPredicted RBP2.3□□□□□ -2.04
SMARCE1-215ENST00000578995 IGKV2D-28P01615 120 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms