RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 GAGE2DQ9UEU5 116 aa6.84□□□□□ -1.31
VPS53-220ENST00000576149 KRTAP10-11P60412 298 aa6.84□□□□□ -1.32
VPS53-220ENST00000576149 C9orf116Q5BN46 136 aaPredicted RBP6.84□□□□□ -1.32
VPS53-220ENST00000576149 Q6Q795 121 aa6.84□□□□□ -1.32
VPS53-220ENST00000576149 LYPD5Q6UWN5 251 aa6.84□□□□□ -1.32
VPS53-220ENST00000576149 KLK12Q9UKR0 248 aa6.84□□□□□ -1.32
VPS53-220ENST00000576149 NANOS2P60321 138 aaKnown RBP6.82□□□□□ -1.32
VPS53-220ENST00000576149 PRR3P79522 188 aaKnown RBP6.82□□□□□ -1.32
VPS53-220ENST00000576149 TTC32Q5I0X7 151 aa6.82□□□□□ -1.32
VPS53-220ENST00000576149 ENHOQ6UWT2 76 aa6.82□□□□□ -1.32
VPS53-220ENST00000576149 LECT2O14960 151 aa6.82□□□□□ -1.32
VPS53-220ENST00000576149 INAFM2P0DMQ5 153 aa6.82□□□□□ -1.32
VPS53-220ENST00000576149 SPAG11BQ08648 103 aa6.82□□□□□ -1.32
VPS53-220ENST00000576149 H3BNG1 76 aa6.81□□□□□ -1.32
VPS53-220ENST00000576149 C10orf25Q5T742 122 aa6.81□□□□□ -1.32
VPS53-220ENST00000576149 Q5XG85 94 aa6.81□□□□□ -1.32
VPS53-220ENST00000576149 C6orf223Q8N319 242 aa6.81□□□□□ -1.32
VPS53-220ENST00000576149 A0A0J9YWU9 116 aa6.81□□□□□ -1.32
VPS53-220ENST00000576149 UNQ6190/PRO20217Q6UXQ8 127 aa6.81□□□□□ -1.32
VPS53-220ENST00000576149 LINC00528Q8N1L1 170 aa6.81□□□□□ -1.32
VPS53-220ENST00000576149 MUC7Q8TAX7 377 aa6.81□□□□□ -1.32
VPS53-220ENST00000576149 EGFEM1PQ0D2K5 195 aa6.8□□□□□ -1.32
VPS53-220ENST00000576149 CYSRT1A8MQ03 144 aa6.8□□□□□ -1.32
VPS53-220ENST00000576149 Q8NDZ9 215 aa6.8□□□□□ -1.32
VPS53-220ENST00000576149 A0A0A0MQY5 61 aa6.79□□□□□ -1.32
VPS53-220ENST00000576149 KRTAP24-1Q3LI83 254 aa6.79□□□□□ -1.32
VPS53-220ENST00000576149 KPRPQ5T749 579 aaPredicted RBP6.79□□□□□ -1.32
VPS53-220ENST00000576149 LINC00526Q96FQ7 95 aa6.79□□□□□ -1.32
VPS53-220ENST00000576149 C9orf129Q5T035 196 aaKnown RBP6.79□□□□□ -1.32
VPS53-220ENST00000576149 SDIM1Q6ZPB5 146 aa6.79□□□□□ -1.32
VPS53-220ENST00000576149 OBSCN-AS1Q96MR7 158 aa6.79□□□□□ -1.32
VPS53-220ENST00000576149 Q6ZTC4 211 aa6.78□□□□□ -1.32
VPS53-220ENST00000576149 LINC00167Q96N53 147 aa6.78□□□□□ -1.32
VPS53-220ENST00000576149 GVQW2A0A096LPI5 108 aaPredicted RBP6.78□□□□□ -1.32
VPS53-220ENST00000576149 TRBV7-7A0A0K0K1E9 115 aa6.78□□□□□ -1.32
VPS53-220ENST00000576149 SLPIP03973 132 aa6.78□□□□□ -1.32
VPS53-220ENST00000576149 NDUFV3P56181 108 aaKnown RBP6.78□□□□□ -1.32
VPS53-220ENST00000576149 WFDC10BQ8IUB3 73 aa6.78□□□□□ -1.32
VPS53-220ENST00000576149 SMCR5Q8TEV8 140 aa6.78□□□□□ -1.32
VPS53-220ENST00000576149 NCR3O14931 201 aa6.77□□□□□ -1.33
VPS53-220ENST00000576149 ORMDL1Q9P0S3 153 aa6.77□□□□□ -1.33
VPS53-220ENST00000576149 GAGE2AQ6NT46 116 aa6.77□□□□□ -1.33
VPS53-220ENST00000576149 LINC00643Q86TS7 51 aa6.77□□□□□ -1.33
VPS53-220ENST00000576149 Q8N814 137 aa6.77□□□□□ -1.33
VPS53-220ENST00000576149 S100A7L2Q5SY68 101 aa6.76□□□□□ -1.33
VPS53-220ENST00000576149 C3orf56Q8N813 242 aa6.76□□□□□ -1.33
VPS53-220ENST00000576149 C14orf132Q9NPU4 83 aa6.76□□□□□ -1.33
VPS53-220ENST00000576149 C6orf99Q4VX62 202 aa6.75□□□□□ -1.33
VPS53-220ENST00000576149 KRTAP26-1Q6PEX3 210 aa6.75□□□□□ -1.33
VPS53-220ENST00000576149 IMUPQ9GZP8 106 aa6.75□□□□□ -1.33
VPS53-220ENST00000576149 C6orf48Q9UBA6 75 aa6.75□□□□□ -1.33
VPS53-220ENST00000576149 F8P00451 2351 aa6.75□□□□□ -1.33
VPS53-220ENST00000576149 PMAIP1Q13794 54 aa6.75□□□□□ -1.33
VPS53-220ENST00000576149 ESRGQ1W209 222 aa6.75□□□□□ -1.33
VPS53-220ENST00000576149 IGLV6-57P01721 117 aa6.74□□□□□ -1.33
VPS53-220ENST00000576149 TMEM256-PLSCR3K7ERE1 68 aa6.72□□□□□ -1.33
VPS53-220ENST00000576149 RPL18AQ02543 176 aaKnown RBP6.72□□□□□ -1.33
VPS53-220ENST00000576149 ANK2Q01484 3957 aa6.72□□□□□ -1.33
VPS53-220ENST00000576149 FAM236AA0A1B0GUQ0 79 aa6.72□□□□□ -1.33
VPS53-220ENST00000576149 FAM236BA0A1B0GV22 79 aa6.72□□□□□ -1.33
VPS53-220ENST00000576149 LINC00575Q6W349 94 aa6.72□□□□□ -1.33
VPS53-220ENST00000576149 DEFB131BA0A096LNP1 70 aa6.71□□□□□ -1.33
VPS53-220ENST00000576149 HIGD2BQ4VC39 106 aa6.71□□□□□ -1.33
VPS53-220ENST00000576149 JMJD7-PLA2G4BH0Y9G9 81 aa6.71□□□□□ -1.34
VPS53-220ENST00000576149 CAMK2N2Q96S95 79 aa6.71□□□□□ -1.34
VPS53-220ENST00000576149 XAGE1AQ9HD64 81 aa6.71□□□□□ -1.34
VPS53-220ENST00000576149 CMYA5Q8N3K9 4069 aa6.71□□□□□ -1.34
VPS53-220ENST00000576149 TNP2Q05952 138 aa6.7□□□□□ -1.34
VPS53-220ENST00000576149 LINC01556Q5JQF7 62 aa6.7□□□□□ -1.34
VPS53-220ENST00000576149 C15orf56Q8N910 161 aa6.7□□□□□ -1.34
VPS53-220ENST00000576149 TRBV10-3A0A0K0K1G6 114 aa6.69□□□□□ -1.34
VPS53-220ENST00000576149 CCKP06307 115 aa6.69□□□□□ -1.34
VPS53-220ENST00000576149 LINC00846Q9NV44 126 aa6.69□□□□□ -1.34
VPS53-220ENST00000576149 A0A0U1RQV1 116 aa6.69□□□□□ -1.34
VPS53-220ENST00000576149 hADV29S1A0JD25 119 aa6.69□□□□□ -1.34
VPS53-220ENST00000576149 Q6ZRU5 148 aa6.69□□□□□ -1.34
VPS53-220ENST00000576149 FBN1P35555 2871 aaKnown RBP6.68□□□□□ -1.34
VPS53-220ENST00000576149 TRAV23DV6A0A075B6W5 121 aa6.68□□□□□ -1.34
VPS53-220ENST00000576149 DNAH3Q8TD57 4116 aa6.67□□□□□ -1.34
VPS53-220ENST00000576149 NDUFC2-KCTD14E9PQ53 114 aa6.67□□□□□ -1.34
VPS53-220ENST00000576149 MRPL55Q7Z7F7 128 aaKnown RBP6.67□□□□□ -1.34
VPS53-220ENST00000576149 IGKV2D-24A0A075B6R9 120 aa6.66□□□□□ -1.34
VPS53-220ENST00000576149 GHRHP01286 108 aa6.66□□□□□ -1.34
VPS53-220ENST00000576149 DNAH10OSP0CZ25 163 aa6.66□□□□□ -1.34
VPS53-220ENST00000576149 DIRC1Q969H9 104 aa6.66□□□□□ -1.34
VPS53-220ENST00000576149 Q6JHZ5 121 aa6.66□□□□□ -1.34
VPS53-220ENST00000576149 ZNF73O43830 326 aaPredicted RBP6.65□□□□□ -1.34
VPS53-220ENST00000576149 TENM3Q9P273 2699 aa6.65□□□□□ -1.34
VPS53-220ENST00000576149 M0R378 163 aa6.65□□□□□ -1.35
VPS53-220ENST00000576149 STAB1Q9NY15 2570 aa6.64□□□□□ -1.35
VPS53-220ENST00000576149 Q6ZQY7 126 aa6.64□□□□□ -1.35
VPS53-220ENST00000576149 PKD1L1Q8TDX9 2849 aa6.64□□□□□ -1.35
VPS53-220ENST00000576149 TRAV10A0A0B4J240 114 aa6.64□□□□□ -1.35
VPS53-220ENST00000576149 TRBV7-6A0A0J9YX20 115 aa6.64□□□□□ -1.35
VPS53-220ENST00000576149 Q6ZRP5 223 aa6.64□□□□□ -1.35
VPS53-220ENST00000576149 H3BQ85 93 aa6.63□□□□□ -1.35
VPS53-220ENST00000576149 COX7BP24311 80 aa6.63□□□□□ -1.35
VPS53-220ENST00000576149 ELOF1P60002 83 aaKnown RBP6.63□□□□□ -1.35
VPS53-220ENST00000576149 RBM3P98179 157 aaKnown RBP6.63□□□□□ -1.35
VPS53-220ENST00000576149 SYCNQ0VAF6 134 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms