RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 XAGE1AQ9HD64 81 aa5.42□□□□□ -1.54
NUP88-211ENST00000575976 LINC00474Q9P2X8 69 aa5.42□□□□□ -1.54
NUP88-211ENST00000575976 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.41□□□□□ -1.54
NUP88-211ENST00000575976 SMIM13P0DJ93 91 aa5.41□□□□□ -1.54
NUP88-211ENST00000575976 NMUP48645 174 aa5.41□□□□□ -1.54
NUP88-211ENST00000575976 LINC00158P58513 81 aa5.41□□□□□ -1.54
NUP88-211ENST00000575976 COX17Q14061 63 aa5.41□□□□□ -1.54
NUP88-211ENST00000575976 PLAC8Q9NZF1 115 aa5.41□□□□□ -1.54
NUP88-211ENST00000575976 FAM168BA1KXE4 195 aa5.4□□□□□ -1.54
NUP88-211ENST00000575976 SMR3BP02814 79 aaPredicted RBP5.4□□□□□ -1.54
NUP88-211ENST00000575976 S100A12P80511 92 aa5.4□□□□□ -1.54
NUP88-211ENST00000575976 C4orf48Q5BLP8 95 aa5.4□□□□□ -1.54
NUP88-211ENST00000575976 A0A0J9YXY3 114 aa5.39□□□□□ -1.55
NUP88-211ENST00000575976 ZNF815PA8K554 130 aa5.39□□□□□ -1.55
NUP88-211ENST00000575976 LINC00587B1AMM8 73 aa5.39□□□□□ -1.55
NUP88-211ENST00000575976 EPM2AB3EWF7 344 aa5.39□□□□□ -1.55
NUP88-211ENST00000575976 PYY3Q5JQD4 70 aa5.39□□□□□ -1.55
NUP88-211ENST00000575976 KRTAP7-1Q8IUC3 87 aa5.39□□□□□ -1.55
NUP88-211ENST00000575976 PCP2Q8IVA1 136 aa5.39□□□□□ -1.55
NUP88-211ENST00000575976 SND1-IT1Q9HBX3 110 aa5.39□□□□□ -1.55
NUP88-211ENST00000575976 SERTAD4-AS1Q5TG53 156 aa5.38□□□□□ -1.55
NUP88-211ENST00000575976 FAM19A5Q7Z5A7 132 aaPredicted RBP5.38□□□□□ -1.55
NUP88-211ENST00000575976 MIR7-3HGQ8N6C7 128 aa5.38□□□□□ -1.55
NUP88-211ENST00000575976 SRRM2Q9UQ35 2752 aaKnown RBP5.38□□□□□ -1.55
NUP88-211ENST00000575976 INAFM2P0DMQ5 153 aa5.37□□□□□ -1.55
NUP88-211ENST00000575976 PHF5AQ7RTV0 110 aaKnown RBP5.37□□□□□ -1.55
NUP88-211ENST00000575976 DAND5Q8N907 189 aa5.37□□□□□ -1.55
NUP88-211ENST00000575976 PLA2G2DQ9UNK4 145 aa5.37□□□□□ -1.55
NUP88-211ENST00000575976 ADAMTSL4-AS1Q5T5F5 129 aa5.36□□□□□ -1.55
NUP88-211ENST00000575976 LINC00528Q8N1L1 170 aa5.36□□□□□ -1.55
NUP88-211ENST00000575976 LITAFQ99732 161 aa5.36□□□□□ -1.55
NUP88-211ENST00000575976 KRTAP9-2Q9BYQ4 174 aa5.36□□□□□ -1.55
NUP88-211ENST00000575976 PAM16Q9Y3D7 125 aa5.36□□□□□ -1.55
NUP88-211ENST00000575976 C22orf24Q9Y442 160 aa5.36□□□□□ -1.55
NUP88-211ENST00000575976 KRTAP9-6A0A140TA67 174 aa5.35□□□□□ -1.55
NUP88-211ENST00000575976 M0QXV9 152 aa5.35□□□□□ -1.55
NUP88-211ENST00000575976 TIMM17BO60830 172 aa5.35□□□□□ -1.55
NUP88-211ENST00000575976 SPATA45Q537H7 98 aa5.35□□□□□ -1.55
NUP88-211ENST00000575976 SCGB1D4Q6XE38 83 aa5.35□□□□□ -1.55
NUP88-211ENST00000575976 Q8NDZ9 215 aa5.35□□□□□ -1.55
NUP88-211ENST00000575976 VAMP8Q9BV40 100 aa5.35□□□□□ -1.55
NUP88-211ENST00000575976 IGLV5-37A0A075B6J1 123 aa5.34□□□□□ -1.55
NUP88-211ENST00000575976 FAM229AH3BQW9 127 aa5.34□□□□□ -1.55
NUP88-211ENST00000575976 COX8AP10176 69 aa5.34□□□□□ -1.55
NUP88-211ENST00000575976 VPREB1P12018 145 aa5.34□□□□□ -1.55
NUP88-211ENST00000575976 NPC2P61916 151 aa5.34□□□□□ -1.55
NUP88-211ENST00000575976 RPL24P83731 157 aaKnown RBP5.34□□□□□ -1.55
NUP88-211ENST00000575976 SOSTDC1Q6X4U4 206 aa5.34□□□□□ -1.55
NUP88-211ENST00000575976 C7orf33Q8WU49 177 aa5.34□□□□□ -1.55
NUP88-211ENST00000575976 TP73-AS1Q9UF72 201 aa5.34□□□□□ -1.55
NUP88-211ENST00000575976 LOC107984156A0A0G2JMH3 177 aa5.33□□□□□ -1.56
NUP88-211ENST00000575976 LOC105371267A0A1B0GV96 52 aa5.33□□□□□ -1.56
NUP88-211ENST00000575976 EIF4EBP3O60516 100 aaPredicted RBP5.33□□□□□ -1.56
NUP88-211ENST00000575976 Q5VSD8 79 aa5.33□□□□□ -1.56
NUP88-211ENST00000575976 KRTAP11-1Q8IUC1 163 aa5.33□□□□□ -1.56
NUP88-211ENST00000575976 ARL17AQ8IVW1 177 aa5.33□□□□□ -1.56
NUP88-211ENST00000575976 BOD1L2Q8IYS8 172 aa5.33□□□□□ -1.56
NUP88-211ENST00000575976 C14orf144Q96I85 54 aa5.33□□□□□ -1.56
NUP88-211ENST00000575976 FAT1Q14517 4588 aa5.33□□□□□ -1.56
NUP88-211ENST00000575976 TMEM238C9JI98 176 aa5.32□□□□□ -1.56
NUP88-211ENST00000575976 RPL37AP61513 92 aaKnown RBP5.32□□□□□ -1.56
NUP88-211ENST00000575976 PRR3P79522 188 aaKnown RBP5.32□□□□□ -1.56
NUP88-211ENST00000575976 LBHQ53QV2 105 aaPredicted RBP5.32□□□□□ -1.56
NUP88-211ENST00000575976 MRPL55Q7Z7F7 128 aaKnown RBP5.32□□□□□ -1.56
NUP88-211ENST00000575976 NKAPP1Q8N9T2 125 aa5.32□□□□□ -1.56
NUP88-211ENST00000575976 LINC00308Q8TCZ7 52 aa5.32□□□□□ -1.56
NUP88-211ENST00000575976 LINC00167Q96N53 147 aa5.32□□□□□ -1.56
NUP88-211ENST00000575976 MIEN1Q9BRT3 115 aa5.32□□□□□ -1.56
NUP88-211ENST00000575976 SPANXDQ9BXN6 97 aa5.32□□□□□ -1.56
NUP88-211ENST00000575976 SPANXCQ9NY87 97 aa5.32□□□□□ -1.56
NUP88-211ENST00000575976 GAGE10A6NGK3 116 aa5.31□□□□□ -1.56
NUP88-211ENST00000575976 DLEU1O43261 78 aa5.31□□□□□ -1.56
NUP88-211ENST00000575976 LORP23490 312 aaPredicted RBP5.31□□□□□ -1.56
NUP88-211ENST00000575976 KRTAP10-4P60372 401 aaPredicted RBP5.31□□□□□ -1.56
NUP88-211ENST00000575976 UBE2BP63146 152 aa5.31□□□□□ -1.56
NUP88-211ENST00000575976 RPL37AP8A6NKH3 93 aa5.3□□□□□ -1.56
NUP88-211ENST00000575976 M0R378 163 aa5.3□□□□□ -1.56
NUP88-211ENST00000575976 NCR3O14931 201 aa5.3□□□□□ -1.56
NUP88-211ENST00000575976 PLA2G1BP04054 148 aaKnown RBP5.3□□□□□ -1.56
NUP88-211ENST00000575976 XP32Q5T750 250 aa5.3□□□□□ -1.56
NUP88-211ENST00000575976 PSORS1C2Q9UIG4 136 aa5.3□□□□□ -1.56
NUP88-211ENST00000575976 MYCBP2O75592 4640 aa5.29□□□□□ -1.56
NUP88-211ENST00000575976 J3QL48 77 aa5.29□□□□□ -1.56
NUP88-211ENST00000575976 NDUFC2O95298 119 aa5.29□□□□□ -1.56
NUP88-211ENST00000575976 SLC25A34Q6PIV7 304 aa5.29□□□□□ -1.56
NUP88-211ENST00000575976 Q6ZVH6 145 aa5.29□□□□□ -1.56
NUP88-211ENST00000575976 MUSTN1Q8IVN3 82 aa5.29□□□□□ -1.56
NUP88-211ENST00000575976 SPANXB1Q9NS25 103 aaPredicted RBP5.29□□□□□ -1.56
NUP88-211ENST00000575976 IGLV1-50A0A075B6I6 118 aa5.28□□□□□ -1.56
NUP88-211ENST00000575976 IGKV2-28A0A075B6P5 120 aa5.28□□□□□ -1.56
NUP88-211ENST00000575976 IGKV2D-28P01615 120 aa5.28□□□□□ -1.56
NUP88-211ENST00000575976 IFITM1P13164 125 aa5.28□□□□□ -1.56
NUP88-211ENST00000575976 SRSF9Q13242 221 aaKnown RBP eCLIP5.28□□□□□ -1.56
NUP88-211ENST00000575976 C1orf137Q5JT78 98 aa5.28□□□□□ -1.56
NUP88-211ENST00000575976 C2orf91Q6ZV80 131 aa5.28□□□□□ -1.56
NUP88-211ENST00000575976 TRBV10-2A0A0K0K1G8 114 aa5.27□□□□□ -1.57
NUP88-211ENST00000575976 SMIM6P0DI80 62 aa5.27□□□□□ -1.57
NUP88-211ENST00000575976 PPDPFQ9H3Y8 114 aa5.27□□□□□ -1.57
NUP88-211ENST00000575976 TRBV10-3A0A0K0K1G6 114 aa5.26□□□□□ -1.57
NUP88-211ENST00000575976 HNRNPA3P51991 378 aaKnown RBP5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms