RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 A0A087X002 238 aa6.47□□□□□ -1.37
VPS53-207ENST00000570510 LEPROTL1O95214 131 aa6.47□□□□□ -1.37
VPS53-207ENST00000570510 C11orf86A6NJI1 115 aa6.46□□□□□ -1.38
VPS53-207ENST00000570510 PLNP26678 52 aa6.46□□□□□ -1.38
VPS53-207ENST00000570510 PMCHL1Q16048 86 aa6.46□□□□□ -1.38
VPS53-207ENST00000570510 LCE2CQ5TA81 110 aa6.46□□□□□ -1.38
VPS53-207ENST00000570510 LINC00304Q8N9R0 145 aa6.46□□□□□ -1.38
VPS53-207ENST00000570510 IGLV5-37A0A075B6J1 123 aa6.45□□□□□ -1.38
VPS53-207ENST00000570510 NUPR1O60356 82 aa6.45□□□□□ -1.38
VPS53-207ENST00000570510 SERF1AO75920 110 aa6.45□□□□□ -1.38
VPS53-207ENST00000570510 SPINK8P0C7L1 97 aa6.45□□□□□ -1.38
VPS53-207ENST00000570510 RPL28P46779 137 aaKnown RBP6.45□□□□□ -1.38
VPS53-207ENST00000570510 TMEM170BQ5T4T1 132 aa6.45□□□□□ -1.38
VPS53-207ENST00000570510 PPDPFQ9H3Y8 114 aa6.45□□□□□ -1.38
VPS53-207ENST00000570510 MUC17Q685J3 4493 aa6.44□□□□□ -1.38
VPS53-207ENST00000570510 TMEM223A0PJW6 202 aa6.44□□□□□ -1.38
VPS53-207ENST00000570510 HERV-K104P63124 156 aa6.44□□□□□ -1.38
VPS53-207ENST00000570510 C9orf129Q5T035 196 aaKnown RBP6.44□□□□□ -1.38
VPS53-207ENST00000570510 S100A1P23297 94 aa6.43□□□□□ -1.38
VPS53-207ENST00000570510 AKR1D1P51857 326 aa6.43□□□□□ -1.38
VPS53-207ENST00000570510 COA6Q5JTJ3 125 aaKnown RBP6.43□□□□□ -1.38
VPS53-207ENST00000570510 ZNF625Q96I27 306 aaPredicted RBP6.43□□□□□ -1.38
VPS53-207ENST00000570510 LINC00310P59036 64 aa6.42□□□□□ -1.38
VPS53-207ENST00000570510 FAM19A2Q8N3H0 131 aa6.42□□□□□ -1.38
VPS53-207ENST00000570510 MAP1LC3CQ9BXW4 147 aa6.42□□□□□ -1.38
VPS53-207ENST00000570510 ERG28Q9UKR5 140 aa6.42□□□□□ -1.38
VPS53-207ENST00000570510 IGKV2D-26A0A0A0MRZ7 120 aa6.41□□□□□ -1.38
VPS53-207ENST00000570510 HIST1H2BKO60814 126 aa6.41□□□□□ -1.38
VPS53-207ENST00000570510 HIST1H2BJP06899 126 aa6.41□□□□□ -1.38
VPS53-207ENST00000570510 HIST1H2BOP23527 126 aa6.41□□□□□ -1.38
VPS53-207ENST00000570510 HIST1H2BBP33778 126 aa6.41□□□□□ -1.38
VPS53-207ENST00000570510 NMUP48645 174 aa6.41□□□□□ -1.38
VPS53-207ENST00000570510 HIST1H2BDP58876 126 aa6.41□□□□□ -1.38
VPS53-207ENST00000570510 HERVK_113P61574 105 aa6.41□□□□□ -1.38
VPS53-207ENST00000570510 HIST1H2BCP62807 126 aa6.41□□□□□ -1.38
VPS53-207ENST00000570510 RPL24P83731 157 aaKnown RBP6.41□□□□□ -1.38
VPS53-207ENST00000570510 HIST2H2BEQ16778 126 aa6.41□□□□□ -1.38
VPS53-207ENST00000570510 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.41□□□□□ -1.38
VPS53-207ENST00000570510 MRPL55Q7Z7F7 128 aaKnown RBP6.41□□□□□ -1.38
VPS53-207ENST00000570510 HIST1H2BHQ93079 126 aa6.41□□□□□ -1.38
VPS53-207ENST00000570510 PLEKHB2Q96CS7 222 aa6.41□□□□□ -1.38
VPS53-207ENST00000570510 HIST1H2BNQ99877 126 aa6.41□□□□□ -1.38
VPS53-207ENST00000570510 HIST1H2BMQ99879 126 aa6.41□□□□□ -1.38
VPS53-207ENST00000570510 ANAPC11Q9NYG5 84 aa6.41□□□□□ -1.38
VPS53-207ENST00000570510 C22orf24Q9Y442 160 aa6.41□□□□□ -1.38
VPS53-207ENST00000570510 DPM2O94777 84 aa6.4□□□□□ -1.38
VPS53-207ENST00000570510 SEC61BP60468 96 aaKnown RBP6.4□□□□□ -1.38
VPS53-207ENST00000570510 KRTAP7-1Q8IUC3 87 aa6.4□□□□□ -1.38
VPS53-207ENST00000570510 MYMXA0A1B0GTQ4 84 aa6.39□□□□□ -1.39
VPS53-207ENST00000570510 XAGE1AQ9HD64 81 aa6.39□□□□□ -1.39
VPS53-207ENST00000570510 LEPROTO15243 131 aa6.38□□□□□ -1.39
VPS53-207ENST00000570510 BCE1O60756 84 aa6.38□□□□□ -1.39
VPS53-207ENST00000570510 IGKCP01834 107 aa6.38□□□□□ -1.39
VPS53-207ENST00000570510 ASB16-AS1Q495Z4 193 aa6.38□□□□□ -1.39
VPS53-207ENST00000570510 NKAPP1Q8N9T2 125 aa6.38□□□□□ -1.39
VPS53-207ENST00000570510 LOC107984156A0A0G2JMH3 177 aa6.37□□□□□ -1.39
VPS53-207ENST00000570510 CTAG1AP78358 180 aa6.37□□□□□ -1.39
VPS53-207ENST00000570510 KRTAP13-2Q52LG2 175 aa6.37□□□□□ -1.39
VPS53-207ENST00000570510 PET117Q6UWS5 81 aa6.37□□□□□ -1.39
VPS53-207ENST00000570510 ARL17AQ8IVW1 177 aa6.37□□□□□ -1.39
VPS53-207ENST00000570510 SND1-IT1Q9HBX3 110 aa6.37□□□□□ -1.39
VPS53-207ENST00000570510 SYS1-DBNDD2H3BUS1 97 aa6.36□□□□□ -1.39
VPS53-207ENST00000570510 ATP6V1G1O75348 118 aa6.36□□□□□ -1.39
VPS53-207ENST00000570510 CFC1BP0CG36 223 aa6.36□□□□□ -1.39
VPS53-207ENST00000570510 UBE2AP49459 152 aa6.36□□□□□ -1.39
VPS53-207ENST00000570510 FAM229BQ4G0N7 80 aa6.36□□□□□ -1.39
VPS53-207ENST00000570510 NDUFA12Q9UI09 145 aa6.36□□□□□ -1.39
VPS53-207ENST00000570510 KRTAP9-7A8MTY7 169 aa6.35□□□□□ -1.39
VPS53-207ENST00000570510 VPREB1P12018 145 aa6.35□□□□□ -1.39
VPS53-207ENST00000570510 FABP4P15090 132 aa6.35□□□□□ -1.39
VPS53-207ENST00000570510 PFN2P35080 140 aa6.35□□□□□ -1.39
VPS53-207ENST00000570510 LINC01545Q5VT33 79 aa6.35□□□□□ -1.39
VPS53-207ENST00000570510 LINC00167Q96N53 147 aa6.35□□□□□ -1.39
VPS53-207ENST00000570510 E9PLD3 99 aa6.34□□□□□ -1.39
VPS53-207ENST00000570510 J3QQQ9 107 aa6.34□□□□□ -1.39
VPS53-207ENST00000570510 SCO1O75880 301 aa6.34□□□□□ -1.39
VPS53-207ENST00000570510 LINC00158P58513 81 aa6.34□□□□□ -1.39
VPS53-207ENST00000570510 FP248Q71RG6 208 aaPredicted RBP6.34□□□□□ -1.39
VPS53-207ENST00000570510 LGALS3P17931 250 aaKnown RBP6.33□□□□□ -1.4
VPS53-207ENST00000570510 MEIG1Q5JSS6 88 aa6.33□□□□□ -1.4
VPS53-207ENST00000570510 C20orf202A1L168 122 aa6.32□□□□□ -1.4
VPS53-207ENST00000570510 RPL37AP8A6NKH3 93 aa6.32□□□□□ -1.4
VPS53-207ENST00000570510 H0Y8G0 127 aa6.32□□□□□ -1.4
VPS53-207ENST00000570510 M0R378 163 aa6.32□□□□□ -1.4
VPS53-207ENST00000570510 SNRPEP62304 92 aaKnown RBP6.32□□□□□ -1.4
VPS53-207ENST00000570510 CBY1Q9Y3M2 126 aa6.32□□□□□ -1.4
VPS53-207ENST00000570510 TRBV10-2A0A0K0K1G8 114 aa6.31□□□□□ -1.4
VPS53-207ENST00000570510 NDUFC2O95298 119 aa6.31□□□□□ -1.4
VPS53-207ENST00000570510 S100A12P80511 92 aa6.31□□□□□ -1.4
VPS53-207ENST00000570510 SPAG11AQ6PDA7 123 aa6.31□□□□□ -1.4
VPS53-207ENST00000570510 KRTAP4-1Q9BYQ7 146 aa6.31□□□□□ -1.4
VPS53-207ENST00000570510 TIMM17BO60830 172 aa6.3□□□□□ -1.4
VPS53-207ENST00000570510 MIR7-3HGQ8N6C7 128 aa6.3□□□□□ -1.4
VPS53-207ENST00000570510 SMIM13P0DJ93 91 aa6.29□□□□□ -1.4
VPS53-207ENST00000570510 LORP23490 312 aaPredicted RBP6.29□□□□□ -1.4
VPS53-207ENST00000570510 KRTAP13-3Q3SY46 172 aa6.29□□□□□ -1.4
VPS53-207ENST00000570510 KRTAP13-1Q8IUC0 172 aa6.29□□□□□ -1.4
VPS53-207ENST00000570510 GAGE10A6NGK3 116 aa6.28□□□□□ -1.4
VPS53-207ENST00000570510 PRYO14603 147 aa6.28□□□□□ -1.4
VPS53-207ENST00000570510 C3orf79P0CE67 100 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms