RNA–Protein interactions for RNA: ENST00000570484.1

CTDNEP1-204, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 2

Gene CTDNEP1, Length 393 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-204ENST00000570484 SRSF9Q13242 221 aaKnown RBP eCLIP4.27□□□□□ -1.73
CTDNEP1-204ENST00000570484 GAGE2EQ4V326 116 aa4.27□□□□□ -1.73
CTDNEP1-204ENST00000570484 C9orf116Q5BN46 136 aaPredicted RBP4.27□□□□□ -1.73
CTDNEP1-204ENST00000570484 MIR7-3HGQ8N6C7 128 aa4.27□□□□□ -1.73
CTDNEP1-204ENST00000570484 C9orf163Q8N9P6 203 aa4.27□□□□□ -1.73
CTDNEP1-204ENST00000570484 KRTAP9-8Q9BYQ0 159 aa4.27□□□□□ -1.73
CTDNEP1-204ENST00000570484 LINC00474Q9P2X8 69 aa4.27□□□□□ -1.73
CTDNEP1-204ENST00000570484 GAGE2DQ9UEU5 116 aa4.27□□□□□ -1.73
CTDNEP1-204ENST00000570484 TP73-AS1Q9UF72 201 aa4.27□□□□□ -1.73
CTDNEP1-204ENST00000570484 IGKV2-24A0A0C4DH68 120 aa4.26□□□□□ -1.73
CTDNEP1-204ENST00000570484 C16orf90A8MZG2 172 aa4.26□□□□□ -1.73
CTDNEP1-204ENST00000570484 SLPIP03973 132 aa4.26□□□□□ -1.73
CTDNEP1-204ENST00000570484 TLX1NBP0CAT3 122 aa4.26□□□□□ -1.73
CTDNEP1-204ENST00000570484 NPC2P61916 151 aa4.26□□□□□ -1.73
CTDNEP1-204ENST00000570484 Q6ZVH6 145 aa4.26□□□□□ -1.73
CTDNEP1-204ENST00000570484 DAND5Q8N907 189 aa4.26□□□□□ -1.73
CTDNEP1-204ENST00000570484 HIST1H4GQ99525 98 aa4.26□□□□□ -1.73
CTDNEP1-204ENST00000570484 FUSP35637 526 aaKnown RBP eCLIP4.25□□□□□ -1.73
CTDNEP1-204ENST00000570484 LINC01620Q4KN68 170 aa4.25□□□□□ -1.73
CTDNEP1-204ENST00000570484 Q6ZRP5 223 aa4.25□□□□□ -1.73
CTDNEP1-204ENST00000570484 DPH3Q96FX2 82 aa4.25□□□□□ -1.73
CTDNEP1-204ENST00000570484 SPANXDQ9BXN6 97 aa4.25□□□□□ -1.73
CTDNEP1-204ENST00000570484 XAGE1AQ9HD64 81 aa4.25□□□□□ -1.73
CTDNEP1-204ENST00000570484 SPANXB1Q9NS25 103 aaPredicted RBP4.25□□□□□ -1.73
CTDNEP1-204ENST00000570484 SPANXCQ9NY87 97 aa4.25□□□□□ -1.73
CTDNEP1-204ENST00000570484 HIGD1BQ9P298 99 aa4.25□□□□□ -1.73
CTDNEP1-204ENST00000570484 A0A096LNI7 61 aa4.24□□□□□ -1.73
CTDNEP1-204ENST00000570484 IFITM1P13164 125 aa4.24□□□□□ -1.73
CTDNEP1-204ENST00000570484 RPL24P83731 157 aaKnown RBP4.24□□□□□ -1.73
CTDNEP1-204ENST00000570484 HSD52Q0P140 79 aa4.24□□□□□ -1.73
CTDNEP1-204ENST00000570484 NKAPP1Q8N9T2 125 aa4.24□□□□□ -1.73
CTDNEP1-204ENST00000570484 SND1-IT1Q9HBX3 110 aa4.24□□□□□ -1.73
CTDNEP1-204ENST00000570484 TAL2Q16559 108 aa4.23□□□□□ -1.73
CTDNEP1-204ENST00000570484 LCE5AQ5TCM9 118 aa4.23□□□□□ -1.73
CTDNEP1-204ENST00000570484 C2orf91Q6ZV80 131 aa4.23□□□□□ -1.73
CTDNEP1-204ENST00000570484 FAM19A5Q7Z5A7 132 aaPredicted RBP4.23□□□□□ -1.73
CTDNEP1-204ENST00000570484 LINC00308Q8TCZ7 52 aa4.23□□□□□ -1.73
CTDNEP1-204ENST00000570484 LITAFQ99732 161 aa4.23□□□□□ -1.73
CTDNEP1-204ENST00000570484 KRTAP9-3Q9BYQ3 159 aa4.23□□□□□ -1.73
CTDNEP1-204ENST00000570484 A0A1B0GVY2 172 aa4.22□□□□□ -1.73
CTDNEP1-204ENST00000570484 M0R143 59 aa4.22□□□□□ -1.73
CTDNEP1-204ENST00000570484 CHTF8P0CG12 524 aa4.22□□□□□ -1.73
CTDNEP1-204ENST00000570484 DDTP30046 118 aa4.22□□□□□ -1.73
CTDNEP1-204ENST00000570484 ADAMTSL4-AS1Q5T5F5 129 aa4.22□□□□□ -1.73
CTDNEP1-204ENST00000570484 SDIM1Q6ZPB5 146 aa4.22□□□□□ -1.73
CTDNEP1-204ENST00000570484 SPACA4Q8TDM5 124 aa4.22□□□□□ -1.73
CTDNEP1-204ENST00000570484 DNAH6Q9C0G6 4158 aa4.21□□□□□ -1.74
CTDNEP1-204ENST00000570484 M0QXV9 152 aa4.21□□□□□ -1.74
CTDNEP1-204ENST00000570484 NCR3O14931 201 aa4.21□□□□□ -1.74
CTDNEP1-204ENST00000570484 C9orf129Q5T035 196 aaKnown RBP4.21□□□□□ -1.74
CTDNEP1-204ENST00000570484 MUSTN1Q8IVN3 82 aa4.21□□□□□ -1.74
CTDNEP1-204ENST00000570484 SACSQ9NZJ4 4579 aa4.21□□□□□ -1.74
CTDNEP1-204ENST00000570484 RYR2Q92736 4967 aa4.2□□□□□ -1.74
CTDNEP1-204ENST00000570484 PCP4L1A6NKN8 68 aa4.2□□□□□ -1.74
CTDNEP1-204ENST00000570484 KRTAP10-1P60331 282 aa4.2□□□□□ -1.74
CTDNEP1-204ENST00000570484 UBE2BP63146 152 aa4.2□□□□□ -1.74
CTDNEP1-204ENST00000570484 CTAG1AP78358 180 aa4.2□□□□□ -1.74
CTDNEP1-204ENST00000570484 S100A7L2Q5SY68 101 aa4.2□□□□□ -1.74
CTDNEP1-204ENST00000570484 SOSTDC1Q6X4U4 206 aa4.2□□□□□ -1.74
CTDNEP1-204ENST00000570484 CEND1Q8N111 149 aa4.2□□□□□ -1.74
CTDNEP1-204ENST00000570484 RAB37Q96AX2 223 aa4.2□□□□□ -1.74
CTDNEP1-204ENST00000570484 PPDPFQ9H3Y8 114 aa4.2□□□□□ -1.74
CTDNEP1-204ENST00000570484 KMT2CQ8NEZ4 4911 aaKnown RBP4.2□□□□□ -1.74
CTDNEP1-204ENST00000570484 FAM168BA1KXE4 195 aa4.19□□□□□ -1.74
CTDNEP1-204ENST00000570484 A4D1N5 150 aa4.19□□□□□ -1.74
CTDNEP1-204ENST00000570484 NDUFC2O95298 119 aa4.19□□□□□ -1.74
CTDNEP1-204ENST00000570484 VPREB1P12018 145 aa4.19□□□□□ -1.74
CTDNEP1-204ENST00000570484 BATFQ16520 125 aa4.19□□□□□ -1.74
CTDNEP1-204ENST00000570484 LBHQ53QV2 105 aaPredicted RBP4.19□□□□□ -1.74
CTDNEP1-204ENST00000570484 OR13C6PQ8NH95 151 aa4.19□□□□□ -1.74
CTDNEP1-204ENST00000570484 C7orf33Q8WU49 177 aa4.19□□□□□ -1.74
CTDNEP1-204ENST00000570484 CBY1Q9Y3M2 126 aa4.19□□□□□ -1.74
CTDNEP1-204ENST00000570484 KMT2AQ03164 3969 aa4.19□□□□□ -1.74
CTDNEP1-204ENST00000570484 A0A087WYN8 130 aa4.18□□□□□ -1.74
CTDNEP1-204ENST00000570484 TRAV13-2A0A0B4J235 113 aa4.18□□□□□ -1.74
CTDNEP1-204ENST00000570484 LOC107984156A0A0G2JMH3 177 aa4.18□□□□□ -1.74
CTDNEP1-204ENST00000570484 TRBV10-2A0A0K0K1G8 114 aa4.18□□□□□ -1.74
CTDNEP1-204ENST00000570484 A6NDN8 102 aa4.18□□□□□ -1.74
CTDNEP1-204ENST00000570484 GAGE10A6NGK3 116 aa4.18□□□□□ -1.74
CTDNEP1-204ENST00000570484 M0R378 163 aa4.18□□□□□ -1.74
CTDNEP1-204ENST00000570484 HINT1P49773 126 aaPredicted RBP4.18□□□□□ -1.74
CTDNEP1-204ENST00000570484 Q1RN00 199 aa4.18□□□□□ -1.74
CTDNEP1-204ENST00000570484 SERTAD4-AS1Q5TG53 156 aa4.18□□□□□ -1.74
CTDNEP1-204ENST00000570484 SCXQ7RTU7 201 aa4.18□□□□□ -1.74
CTDNEP1-204ENST00000570484 MRPL55Q7Z7F7 128 aaKnown RBP4.18□□□□□ -1.74
CTDNEP1-204ENST00000570484 ARL17AQ8IVW1 177 aa4.18□□□□□ -1.74
CTDNEP1-204ENST00000570484 Q8N1X5 172 aa4.18□□□□□ -1.74
CTDNEP1-204ENST00000570484 NHP2Q9NX24 153 aaKnown RBP4.18□□□□□ -1.74
CTDNEP1-204ENST00000570484 DNAH2Q9P225 4427 aa4.18□□□□□ -1.74
CTDNEP1-204ENST00000570484 HYDINQ4G0P3 5121 aa4.17□□□□□ -1.74
CTDNEP1-204ENST00000570484 IGLV5-37A0A075B6J1 123 aa4.17□□□□□ -1.74
CTDNEP1-204ENST00000570484 A0A0B4J2C4 111 aa4.17□□□□□ -1.74
CTDNEP1-204ENST00000570484 PANO1I0J062 215 aa4.17□□□□□ -1.74
CTDNEP1-204ENST00000570484 RPL13AP40429 203 aaKnown RBP4.17□□□□□ -1.74
CTDNEP1-204ENST00000570484 FXYD2P54710 66 aa4.17□□□□□ -1.74
CTDNEP1-204ENST00000570484 Q6ZSA8 131 aa4.17□□□□□ -1.74
CTDNEP1-204ENST00000570484 SVIPQ8NHG7 77 aa4.17□□□□□ -1.74
CTDNEP1-204ENST00000570484 PLAC8Q9NZF1 115 aa4.17□□□□□ -1.74
CTDNEP1-204ENST00000570484 C22orf24Q9Y442 160 aa4.17□□□□□ -1.74
CTDNEP1-204ENST00000570484 IGKV2-28A0A075B6P5 120 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms