RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 IGLV5-37A0A075B6J1 123 aa13.66□□□□□ -0.22
CLN3-234ENST00000568472 PRR3P79522 188 aaKnown RBP13.66□□□□□ -0.22
CLN3-234ENST00000568472 RPL24P83731 157 aaKnown RBP13.66□□□□□ -0.22
CLN3-234ENST00000568472 SRRM2Q9UQ35 2752 aaKnown RBP13.66□□□□□ -0.22
CLN3-234ENST00000568472 ABCA13Q86UQ4 5058 aa13.64□□□□□ -0.23
CLN3-234ENST00000568472 A0A0U1RRA0 63 aa13.64□□□□□ -0.23
CLN3-234ENST00000568472 UBE2BP63146 152 aa13.64□□□□□ -0.23
CLN3-234ENST00000568472 MRPL55Q7Z7F7 128 aaKnown RBP13.63□□□□□ -0.23
CLN3-234ENST00000568472 MIR7-3HGQ8N6C7 128 aa13.63□□□□□ -0.23
CLN3-234ENST00000568472 NKAPP1Q8N9T2 125 aa13.63□□□□□ -0.23
CLN3-234ENST00000568472 ATOH7Q8N100 152 aa13.62□□□□□ -0.23
CLN3-234ENST00000568472 PSORS1C2Q9UIG4 136 aa13.62□□□□□ -0.23
CLN3-234ENST00000568472 PCLOQ9Y6V0 5065 aa13.61□□□□□ -0.23
CLN3-234ENST00000568472 IGKV2D-26A0A0A0MRZ7 120 aa13.6□□□□□ -0.23
CLN3-234ENST00000568472 A0A0J9YXY3 114 aa13.6□□□□□ -0.23
CLN3-234ENST00000568472 ZNF815PA8K554 130 aa13.59□□□□□ -0.23
CLN3-234ENST00000568472 VPREB1P12018 145 aa13.59□□□□□ -0.23
CLN3-234ENST00000568472 LOC107984156A0A0G2JMH3 177 aa13.58□□□□□ -0.24
CLN3-234ENST00000568472 HSBP1L1C9JCN9 74 aa13.58□□□□□ -0.24
CLN3-234ENST00000568472 ARL17AQ8IVW1 177 aa13.58□□□□□ -0.24
CLN3-234ENST00000568472 TIMM17BO60830 172 aa13.57□□□□□ -0.24
CLN3-234ENST00000568472 SCGB1D1O95968 90 aa13.57□□□□□ -0.24
CLN3-234ENST00000568472 ANKRD39Q53RE8 183 aa13.57□□□□□ -0.24
CLN3-234ENST00000568472 LINC00167Q96N53 147 aa13.57□□□□□ -0.24
CLN3-234ENST00000568472 C1orf137Q5JT78 98 aa13.56□□□□□ -0.24
CLN3-234ENST00000568472 BOD1L2Q8IYS8 172 aa13.56□□□□□ -0.24
CLN3-234ENST00000568472 MIEN1Q9BRT3 115 aa13.55□□□□□ -0.24
CLN3-234ENST00000568472 KRTAP11-1Q8IUC1 163 aa13.54□□□□□ -0.24
CLN3-234ENST00000568472 SPINK6Q6UWN8 80 aa13.53□□□□□ -0.24
CLN3-234ENST00000568472 M0R378 163 aa13.52□□□□□ -0.25
CLN3-234ENST00000568472 HNRNPA3P51991 378 aaKnown RBP13.52□□□□□ -0.25
CLN3-234ENST00000568472 DAND5Q8N907 189 aa13.52□□□□□ -0.25
CLN3-234ENST00000568472 GAGE10A6NGK3 116 aa13.51□□□□□ -0.25
CLN3-234ENST00000568472 SRSF9Q13242 221 aaKnown RBP eCLIP13.51□□□□□ -0.25
CLN3-234ENST00000568472 TTTY13Q9BZ97 58 aa13.51□□□□□ -0.25
CLN3-234ENST00000568472 RPL37AP8A6NKH3 93 aa13.5□□□□□ -0.25
CLN3-234ENST00000568472 IGLV7-43P04211 117 aa13.5□□□□□ -0.25
CLN3-234ENST00000568472 ADAMTSL4-AS1Q5T5F5 129 aa13.5□□□□□ -0.25
CLN3-234ENST00000568472 SCGB1D4Q6XE38 83 aa13.5□□□□□ -0.25
CLN3-234ENST00000568472 Q8NDZ9 215 aa13.5□□□□□ -0.25
CLN3-234ENST00000568472 LITAFQ99732 161 aa13.49□□□□□ -0.25
CLN3-234ENST00000568472 TMA7Q9Y2S6 64 aaKnown RBP13.49□□□□□ -0.25
CLN3-234ENST00000568472 IGLV1-50A0A075B6I6 118 aa13.48□□□□□ -0.25
CLN3-234ENST00000568472 NDUFC2O95298 119 aa13.48□□□□□ -0.25
CLN3-234ENST00000568472 TMEM238C9JI98 176 aa13.47□□□□□ -0.25
CLN3-234ENST00000568472 PCP2Q8IVA1 136 aa13.47□□□□□ -0.25
CLN3-234ENST00000568472 TRBV10-2A0A0K0K1G8 114 aa13.46□□□□□ -0.25
CLN3-234ENST00000568472 BCE1O60756 84 aa13.46□□□□□ -0.25
CLN3-234ENST00000568472 COPS9Q8WXC6 57 aa13.46□□□□□ -0.25
CLN3-234ENST00000568472 IGKV2-28A0A075B6P5 120 aa13.45□□□□□ -0.26
CLN3-234ENST00000568472 OXTP01178 125 aa13.45□□□□□ -0.26
CLN3-234ENST00000568472 IGKV2D-28P01615 120 aa13.45□□□□□ -0.26
CLN3-234ENST00000568472 JOSD1Q15040 202 aaPredicted RBP13.45□□□□□ -0.26
CLN3-234ENST00000568472 Q6ZVH6 145 aa13.45□□□□□ -0.26
CLN3-234ENST00000568472 LINC00308Q8TCZ7 52 aa13.44□□□□□ -0.26
CLN3-234ENST00000568472 DIRC1Q969H9 104 aa13.44□□□□□ -0.26
CLN3-234ENST00000568472 SPANXB1Q9NS25 103 aaPredicted RBP13.44□□□□□ -0.26
CLN3-234ENST00000568472 KRTAP29-1A8MX34 341 aaPredicted RBP13.43□□□□□ -0.26
CLN3-234ENST00000568472 SPANXDQ9BXN6 97 aa13.43□□□□□ -0.26
CLN3-234ENST00000568472 SPANXCQ9NY87 97 aa13.43□□□□□ -0.26
CLN3-234ENST00000568472 S100A12P80511 92 aa13.42□□□□□ -0.26
CLN3-234ENST00000568472 REG3GQ6UW15 175 aa13.42□□□□□ -0.26
CLN3-234ENST00000568472 SOSTDC1Q6X4U4 206 aa13.42□□□□□ -0.26
CLN3-234ENST00000568472 NCR3O14931 201 aa13.41□□□□□ -0.26
CLN3-234ENST00000568472 ZNF861PO60384 105 aa13.41□□□□□ -0.26
CLN3-234ENST00000568472 IFITM1P13164 125 aa13.41□□□□□ -0.26
CLN3-234ENST00000568472 PPDPFQ9H3Y8 114 aa13.41□□□□□ -0.26
CLN3-234ENST00000568472 RPL28P46779 137 aaKnown RBP13.4□□□□□ -0.26
CLN3-234ENST00000568472 NPC2P61916 151 aa13.4□□□□□ -0.26
CLN3-234ENST00000568472 PKHD1L1Q86WI1 4243 aa13.4□□□□□ -0.26
CLN3-234ENST00000568472 TMEM126AQ9H061 195 aa13.39□□□□□ -0.27
CLN3-234ENST00000568472 FLG2Q5D862 2391 aaPredicted RBP13.38□□□□□ -0.27
CLN3-234ENST00000568472 PRYO14603 147 aa13.37□□□□□ -0.27
CLN3-234ENST00000568472 EIF4EBP3O60516 100 aaPredicted RBP13.37□□□□□ -0.27
CLN3-234ENST00000568472 VAMP8Q9BV40 100 aa13.37□□□□□ -0.27
CLN3-234ENST00000568472 KCNQ1DNQ9H478 68 aa13.37□□□□□ -0.27
CLN3-234ENST00000568472 H0Y9J4 135 aa13.36□□□□□ -0.27
CLN3-234ENST00000568472 COX8AP10176 69 aa13.36□□□□□ -0.27
CLN3-234ENST00000568472 S100A7L2Q5SY68 101 aa13.36□□□□□ -0.27
CLN3-234ENST00000568472 LINC00518Q8N0U6 118 aa13.36□□□□□ -0.27
CLN3-234ENST00000568472 CBY1Q9Y3M2 126 aa13.36□□□□□ -0.27
CLN3-234ENST00000568472 MYCBP2O75592 4640 aa13.35□□□□□ -0.27
CLN3-234ENST00000568472 TRBV10-3A0A0K0K1G6 114 aa13.35□□□□□ -0.27
CLN3-234ENST00000568472 DLEU1O43261 78 aa13.35□□□□□ -0.27
CLN3-234ENST00000568472 DDTP30046 118 aa13.35□□□□□ -0.27
CLN3-234ENST00000568472 UBE2AP49459 152 aa13.35□□□□□ -0.27
CLN3-234ENST00000568472 J3QL48 77 aa13.34□□□□□ -0.27
CLN3-234ENST00000568472 IGLV6-57P01721 117 aa13.33□□□□□ -0.28
CLN3-234ENST00000568472 SPATA45Q537H7 98 aa13.33□□□□□ -0.28
CLN3-234ENST00000568472 PAM16Q9Y3D7 125 aa13.33□□□□□ -0.28
CLN3-234ENST00000568472 FAM19A1Q7Z5A9 133 aa13.32□□□□□ -0.28
CLN3-234ENST00000568472 KRTAP13-1Q8IUC0 172 aa13.32□□□□□ -0.28
CLN3-234ENST00000568472 SPRR1AP35321 89 aa13.31□□□□□ -0.28
CLN3-234ENST00000568472 LINC00337Q8N6G1 96 aa13.31□□□□□ -0.28
CLN3-234ENST00000568472 LINC01600Q96MT4 127 aa13.31□□□□□ -0.28
CLN3-234ENST00000568472 PYY3Q5JQD4 70 aa13.3□□□□□ -0.28
CLN3-234ENST00000568472 MUSTN1Q8IVN3 82 aa13.3□□□□□ -0.28
CLN3-234ENST00000568472 ETDCA0A1B0GVM5 59 aa13.27□□□□□ -0.29
CLN3-234ENST00000568472 SLC25A34Q6PIV7 304 aa13.26□□□□□ -0.29
CLN3-234ENST00000568472 OR13C6PQ8NH95 151 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 226.3 ms