RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 HIST1H2BJP06899 126 aa8.73□□□□□ -1.01
CLN3-228ENST00000567804 FABP4P15090 132 aa8.73□□□□□ -1.01
CLN3-228ENST00000567804 HIST1H2BOP23527 126 aa8.73□□□□□ -1.01
CLN3-228ENST00000567804 HIST1H2BBP33778 126 aa8.73□□□□□ -1.01
CLN3-228ENST00000567804 HIST1H2BDP58876 126 aa8.73□□□□□ -1.01
CLN3-228ENST00000567804 HIST1H2BCP62807 126 aa8.73□□□□□ -1.01
CLN3-228ENST00000567804 HIST2H2BEQ16778 126 aa8.73□□□□□ -1.01
CLN3-228ENST00000567804 KRTAP13-2Q52LG2 175 aa8.73□□□□□ -1.01
CLN3-228ENST00000567804 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.73□□□□□ -1.01
CLN3-228ENST00000567804 NKAPP1Q8N9T2 125 aa8.73□□□□□ -1.01
CLN3-228ENST00000567804 HIST1H2BHQ93079 126 aa8.73□□□□□ -1.01
CLN3-228ENST00000567804 HIST1H2BNQ99877 126 aa8.73□□□□□ -1.01
CLN3-228ENST00000567804 HIST1H2BMQ99879 126 aa8.73□□□□□ -1.01
CLN3-228ENST00000567804 ANAPC11Q9NYG5 84 aa8.73□□□□□ -1.01
CLN3-228ENST00000567804 TMEM223A0PJW6 202 aa8.72□□□□□ -1.01
CLN3-228ENST00000567804 UBE2AP49459 152 aa8.72□□□□□ -1.01
CLN3-228ENST00000567804 FAM229BQ4G0N7 80 aa8.71□□□□□ -1.02
CLN3-228ENST00000567804 ZNF625Q96I27 306 aaPredicted RBP8.7□□□□□ -1.02
CLN3-228ENST00000567804 FAT4Q6V0I7 4981 aa8.7□□□□□ -1.02
CLN3-228ENST00000567804 IGKV2-28A0A075B6P5 120 aa8.69□□□□□ -1.02
CLN3-228ENST00000567804 IGKV2D-28P01615 120 aa8.69□□□□□ -1.02
CLN3-228ENST00000567804 HSPB8Q9UJY1 196 aa8.69□□□□□ -1.02
CLN3-228ENST00000567804 PFN2P35080 140 aa8.68□□□□□ -1.02
CLN3-228ENST00000567804 LINC00304Q8N9R0 145 aa8.68□□□□□ -1.02
CLN3-228ENST00000567804 RETNLBQ9BQ08 111 aa8.68□□□□□ -1.02
CLN3-228ENST00000567804 PMCHL2Q9BQD1 86 aa8.68□□□□□ -1.02
CLN3-228ENST00000567804 ERG28Q9UKR5 140 aa8.68□□□□□ -1.02
CLN3-228ENST00000567804 PRLHP81277 87 aa8.66□□□□□ -1.02
CLN3-228ENST00000567804 VPREB1P12018 145 aa8.65□□□□□ -1.02
CLN3-228ENST00000567804 TSPEAR-AS2P59090 65 aa8.65□□□□□ -1.02
CLN3-228ENST00000567804 TMEM126AQ9H061 195 aa8.65□□□□□ -1.02
CLN3-228ENST00000567804 SND1-IT1Q9HBX3 110 aa8.65□□□□□ -1.02
CLN3-228ENST00000567804 IGKV2D-26A0A0A0MRZ7 120 aa8.64□□□□□ -1.03
CLN3-228ENST00000567804 TMEM238C9JI98 176 aa8.64□□□□□ -1.03
CLN3-228ENST00000567804 ATP6V1G1O75348 118 aa8.64□□□□□ -1.03
CLN3-228ENST00000567804 LCE2AQ5TA79 106 aaPredicted RBP8.64□□□□□ -1.03
CLN3-228ENST00000567804 FAM19A1Q7Z5A9 133 aa8.64□□□□□ -1.03
CLN3-228ENST00000567804 DPM2O94777 84 aa8.63□□□□□ -1.03
CLN3-228ENST00000567804 PLNP26678 52 aa8.63□□□□□ -1.03
CLN3-228ENST00000567804 TPRXLQ17RH7 258 aa8.63□□□□□ -1.03
CLN3-228ENST00000567804 Q8NDZ9 215 aa8.63□□□□□ -1.03
CLN3-228ENST00000567804 MAP1LC3CQ9BXW4 147 aa8.63□□□□□ -1.03
CLN3-228ENST00000567804 KRTAP9-2Q9BYQ4 174 aa8.63□□□□□ -1.03
CLN3-228ENST00000567804 A0A0U1RRA0 63 aa8.62□□□□□ -1.03
CLN3-228ENST00000567804 M0R378 163 aa8.62□□□□□ -1.03
CLN3-228ENST00000567804 CTAG1AP78358 180 aa8.62□□□□□ -1.03
CLN3-228ENST00000567804 RPL24P83731 157 aaKnown RBP8.62□□□□□ -1.03
CLN3-228ENST00000567804 COX17Q14061 63 aa8.62□□□□□ -1.03
CLN3-228ENST00000567804 COA6Q5JTJ3 125 aaKnown RBP8.62□□□□□ -1.03
CLN3-228ENST00000567804 SYS1-DBNDD2H3BUS1 97 aa8.61□□□□□ -1.03
CLN3-228ENST00000567804 IGKCP01834 107 aa8.61□□□□□ -1.03
CLN3-228ENST00000567804 SFTA2Q6UW10 78 aa8.61□□□□□ -1.03
CLN3-228ENST00000567804 CDIP1Q9H305 208 aa8.61□□□□□ -1.03
CLN3-228ENST00000567804 IGLV7-46A0A075B6I9 117 aa8.6□□□□□ -1.03
CLN3-228ENST00000567804 SMIM13P0DJ93 91 aa8.6□□□□□ -1.03
CLN3-228ENST00000567804 S100A1P23297 94 aa8.6□□□□□ -1.03
CLN3-228ENST00000567804 LINC00158P58513 81 aa8.6□□□□□ -1.03
CLN3-228ENST00000567804 PLEKHB2Q96CS7 222 aa8.6□□□□□ -1.03
CLN3-228ENST00000567804 NDUFA12Q9UI09 145 aa8.6□□□□□ -1.03
CLN3-228ENST00000567804 LEPROTO15243 131 aa8.59□□□□□ -1.03
CLN3-228ENST00000567804 C3orf22Q8N5N4 141 aa8.59□□□□□ -1.03
CLN3-228ENST00000567804 J3QQQ9 107 aa8.57□□□□□ -1.04
CLN3-228ENST00000567804 C3orf79P0CE67 100 aa8.57□□□□□ -1.04
CLN3-228ENST00000567804 HIGD2AQ9BW72 106 aa8.57□□□□□ -1.04
CLN3-228ENST00000567804 MYMXA0A1B0GTQ4 84 aa8.56□□□□□ -1.04
CLN3-228ENST00000567804 HERVK_113P61574 105 aa8.56□□□□□ -1.04
CLN3-228ENST00000567804 HERV-K104P63124 156 aa8.56□□□□□ -1.04
CLN3-228ENST00000567804 MEIG1Q5JSS6 88 aa8.56□□□□□ -1.04
CLN3-228ENST00000567804 LINC01545Q5VT33 79 aa8.56□□□□□ -1.04
CLN3-228ENST00000567804 MIR7-3HGQ8N6C7 128 aa8.55□□□□□ -1.04
CLN3-228ENST00000567804 KRTDAPP60985 99 aa8.54□□□□□ -1.04
CLN3-228ENST00000567804 PET117Q6UWS5 81 aa8.54□□□□□ -1.04
CLN3-228ENST00000567804 SPRR4Q96PI1 79 aa8.54□□□□□ -1.04
CLN3-228ENST00000567804 PPDPFQ9H3Y8 114 aa8.54□□□□□ -1.04
CLN3-228ENST00000567804 E9PLD3 99 aa8.53□□□□□ -1.04
CLN3-228ENST00000567804 LGALS3P17931 250 aaKnown RBP8.53□□□□□ -1.04
CLN3-228ENST00000567804 SPAG11AQ6PDA7 123 aa8.53□□□□□ -1.04
CLN3-228ENST00000567804 DAND5Q8N907 189 aa8.53□□□□□ -1.04
CLN3-228ENST00000567804 NMUP48645 174 aa8.51□□□□□ -1.05
CLN3-228ENST00000567804 BOD1L2Q8IYS8 172 aa8.51□□□□□ -1.05
CLN3-228ENST00000567804 ZNF706Q9Y5V0 76 aaPredicted RBP8.5□□□□□ -1.05
CLN3-228ENST00000567804 LINC00587B1AMM8 73 aa8.49□□□□□ -1.05
CLN3-228ENST00000567804 NCR3O14931 201 aa8.49□□□□□ -1.05
CLN3-228ENST00000567804 FP248Q71RG6 208 aaPredicted RBP8.49□□□□□ -1.05
CLN3-228ENST00000567804 A0A0J9YXY3 114 aa8.48□□□□□ -1.05
CLN3-228ENST00000567804 PRYO14603 147 aa8.48□□□□□ -1.05
CLN3-228ENST00000567804 ADAMTSL4-AS1Q5T5F5 129 aa8.48□□□□□ -1.05
CLN3-228ENST00000567804 HIST3H2BBQ8N257 126 aa8.48□□□□□ -1.05
CLN3-228ENST00000567804 TTTY13Q9BZ97 58 aa8.48□□□□□ -1.05
CLN3-228ENST00000567804 EIF4EBP3O60516 100 aaPredicted RBP8.47□□□□□ -1.05
CLN3-228ENST00000567804 SPRR1AP35321 89 aa8.47□□□□□ -1.05
CLN3-228ENST00000567804 C4orf48Q5BLP8 95 aa8.47□□□□□ -1.05
CLN3-228ENST00000567804 ATOH7Q8N100 152 aa8.47□□□□□ -1.05
CLN3-228ENST00000567804 LINC00337Q8N6G1 96 aa8.47□□□□□ -1.05
CLN3-228ENST00000567804 SOSTDC1Q6X4U4 206 aa8.46□□□□□ -1.06
CLN3-228ENST00000567804 Q8NBF4 154 aa8.46□□□□□ -1.06
CLN3-228ENST00000567804 HIST1H2BLQ99880 126 aa8.46□□□□□ -1.06
CLN3-228ENST00000567804 LOC107984156A0A0G2JMH3 177 aa8.45□□□□□ -1.06
CLN3-228ENST00000567804 KRTAP4-16G5E9R7 235 aaPredicted RBP8.45□□□□□ -1.06
CLN3-228ENST00000567804 NPC2P61916 151 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms