RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 UNQ6190/PRO20217Q6UXQ8 127 aa11.88□□□□□ -0.51
SNX1-208ENST00000559844 C6orf223Q8N319 242 aa11.88□□□□□ -0.51
SNX1-208ENST00000559844 C1orf43Q9BWL3 253 aa11.88□□□□□ -0.51
SNX1-208ENST00000559844 LYSTQ99698 3801 aa11.87□□□□□ -0.51
SNX1-208ENST00000559844 C9orf116Q5BN46 136 aaPredicted RBP11.86□□□□□ -0.51
SNX1-208ENST00000559844 C10orf25Q5T742 122 aa11.86□□□□□ -0.51
SNX1-208ENST00000559844 OR13C6PQ8NH95 151 aa11.86□□□□□ -0.51
SNX1-208ENST00000559844 ZNF561-AS1K7EIQ3 104 aa11.85□□□□□ -0.51
SNX1-208ENST00000559844 TRACP01848 142 aa11.85□□□□□ -0.51
SNX1-208ENST00000559844 SMIM11BQ8TCY0 68 aa11.85□□□□□ -0.51
SNX1-208ENST00000559844 CARD19Q96LW7 228 aa11.85□□□□□ -0.51
SNX1-208ENST00000559844 LINC00526Q96FQ7 95 aa11.84□□□□□ -0.51
SNX1-208ENST00000559844 H0YGX0 51 aa11.83□□□□□ -0.52
SNX1-208ENST00000559844 LINC00476Q8WZB0 136 aa11.83□□□□□ -0.52
SNX1-208ENST00000559844 LY6G6CO95867 125 aa11.83□□□□□ -0.52
SNX1-208ENST00000559844 F8WDY8 70 aa11.82□□□□□ -0.52
SNX1-208ENST00000559844 IGKV2D-24A0A075B6R9 120 aa11.81□□□□□ -0.52
SNX1-208ENST00000559844 C2orf48Q96LS8 159 aa11.81□□□□□ -0.52
SNX1-208ENST00000559844 CAMK2N2Q96S95 79 aa11.81□□□□□ -0.52
SNX1-208ENST00000559844 UPK3BQ9BT76 320 aa11.81□□□□□ -0.52
SNX1-208ENST00000559844 C6orf48Q9UBA6 75 aa11.81□□□□□ -0.52
SNX1-208ENST00000559844 HIGD2BQ4VC39 106 aa11.8□□□□□ -0.52
SNX1-208ENST00000559844 C15orf56Q8N910 161 aa11.79□□□□□ -0.52
SNX1-208ENST00000559844 TMEM126AQ9H061 195 aa11.79□□□□□ -0.52
SNX1-208ENST00000559844 FAM218AQ96MZ4 157 aa11.78□□□□□ -0.52
SNX1-208ENST00000559844 RMI2Q96E14 147 aa11.76□□□□□ -0.53
SNX1-208ENST00000559844 ALMS1Q8TCU4 4167 aa11.76□□□□□ -0.53
SNX1-208ENST00000559844 PRR3P79522 188 aaKnown RBP11.76□□□□□ -0.53
SNX1-208ENST00000559844 Q9HAA7 133 aa11.76□□□□□ -0.53
SNX1-208ENST00000559844 NCR3O14931 201 aa11.75□□□□□ -0.53
SNX1-208ENST00000559844 LCE6AA0A183 80 aa11.74□□□□□ -0.53
SNX1-208ENST00000559844 S100A7L2Q5SY68 101 aa11.74□□□□□ -0.53
SNX1-208ENST00000559844 VPS13DQ5THJ4 4388 aa11.74□□□□□ -0.53
SNX1-208ENST00000559844 DNAL4O96015 105 aa11.74□□□□□ -0.53
SNX1-208ENST00000559844 Q6ZRU5 148 aa11.74□□□□□ -0.53
SNX1-208ENST00000559844 TEX49A0A1B0GTD5 131 aa11.73□□□□□ -0.53
SNX1-208ENST00000559844 BAALC-AS2P0C853 105 aa11.72□□□□□ -0.53
SNX1-208ENST00000559844 Q8NDZ9 215 aa11.72□□□□□ -0.53
SNX1-208ENST00000559844 A0A087WYN8 130 aa11.72□□□□□ -0.53
SNX1-208ENST00000559844 A0A1B0GX51 115 aa11.71□□□□□ -0.53
SNX1-208ENST00000559844 DNAH1Q9P2D7 4330 aa11.71□□□□□ -0.53
SNX1-208ENST00000559844 NDUFC2-KCTD14E9PQ53 114 aa11.7□□□□□ -0.54
SNX1-208ENST00000559844 SYCNQ0VAF6 134 aa11.7□□□□□ -0.54
SNX1-208ENST00000559844 NBDYA0A0U1RRE5 68 aa11.69□□□□□ -0.54
SNX1-208ENST00000559844 SIGMAR1Q99720 223 aa11.69□□□□□ -0.54
SNX1-208ENST00000559844 M0R2N4 97 aa11.68□□□□□ -0.54
SNX1-208ENST00000559844 LECT2O14960 151 aa11.68□□□□□ -0.54
SNX1-208ENST00000559844 KRTAP1-5Q9BYS1 174 aa11.68□□□□□ -0.54
SNX1-208ENST00000559844 XAGE1AQ9HD64 81 aa11.68□□□□□ -0.54
SNX1-208ENST00000559844 KMT2AQ03164 3969 aa11.67□□□□□ -0.54
SNX1-208ENST00000559844 SNCGO76070 127 aa11.67□□□□□ -0.54
SNX1-208ENST00000559844 IGLV6-57P01721 117 aa11.67□□□□□ -0.54
SNX1-208ENST00000559844 RPL18AQ02543 176 aaKnown RBP11.67□□□□□ -0.54
SNX1-208ENST00000559844 TTC32Q5I0X7 151 aa11.67□□□□□ -0.54
SNX1-208ENST00000559844 CDIP1Q9H305 208 aa11.67□□□□□ -0.54
SNX1-208ENST00000559844 C6orf99Q4VX62 202 aa11.65□□□□□ -0.54
SNX1-208ENST00000559844 USP17L23D6RBM5 183 aa11.64□□□□□ -0.55
SNX1-208ENST00000559844 KMT2CQ8NEZ4 4911 aaKnown RBP11.64□□□□□ -0.55
SNX1-208ENST00000559844 VPREB1P12018 145 aa11.63□□□□□ -0.55
SNX1-208ENST00000559844 Q6ZR54 194 aa11.63□□□□□ -0.55
SNX1-208ENST00000559844 LINC00167Q96N53 147 aa11.63□□□□□ -0.55
SNX1-208ENST00000559844 HYDINQ4G0P3 5121 aa11.63□□□□□ -0.55
SNX1-208ENST00000559844 Q8N814 137 aa11.63□□□□□ -0.55
SNX1-208ENST00000559844 ORMDL1Q9P0S3 153 aa11.63□□□□□ -0.55
SNX1-208ENST00000559844 SACSQ9NZJ4 4579 aa11.62□□□□□ -0.55
SNX1-208ENST00000559844 TLX1NBP0CAT3 122 aa11.62□□□□□ -0.55
SNX1-208ENST00000559844 GAGE2EQ4V326 116 aa11.62□□□□□ -0.55
SNX1-208ENST00000559844 GAGE2DQ9UEU5 116 aa11.62□□□□□ -0.55
SNX1-208ENST00000559844 C22orf24Q9Y442 160 aa11.62□□□□□ -0.55
SNX1-208ENST00000559844 DNAH6Q9C0G6 4158 aa11.62□□□□□ -0.55
SNX1-208ENST00000559844 FAM240AA0A1B0GVK7 77 aa11.61□□□□□ -0.55
SNX1-208ENST00000559844 M0R378 163 aa11.61□□□□□ -0.55
SNX1-208ENST00000559844 INAFM2P0DMQ5 153 aa11.61□□□□□ -0.55
SNX1-208ENST00000559844 PCP4P48539 62 aa11.61□□□□□ -0.55
SNX1-208ENST00000559844 Q6ZRP5 223 aa11.61□□□□□ -0.55
SNX1-208ENST00000559844 TRBV10-3A0A0K0K1G6 114 aa11.61□□□□□ -0.55
SNX1-208ENST00000559844 TRAV23DV6A0A075B6W5 121 aa11.6□□□□□ -0.55
SNX1-208ENST00000559844 LINC00575Q6W349 94 aa11.59□□□□□ -0.55
SNX1-208ENST00000559844 DIRC1Q969H9 104 aa11.59□□□□□ -0.55
SNX1-208ENST00000559844 ACYP1P07311 99 aa11.58□□□□□ -0.56
SNX1-208ENST00000559844 SLPIP03973 132 aa11.57□□□□□ -0.56
SNX1-208ENST00000559844 SCGB1A1P11684 91 aa11.57□□□□□ -0.56
SNX1-208ENST00000559844 TRBV7-6A0A0J9YX20 115 aa11.56□□□□□ -0.56
SNX1-208ENST00000559844 hADV29S1A0JD25 119 aa11.56□□□□□ -0.56
SNX1-208ENST00000559844 C9orf129Q5T035 196 aaKnown RBP11.56□□□□□ -0.56
SNX1-208ENST00000559844 C1orf134Q5TEV5 83 aa11.56□□□□□ -0.56
SNX1-208ENST00000559844 TMEM256-PLSCR3K7ERE1 68 aa11.55□□□□□ -0.56
SNX1-208ENST00000559844 ZNF73O43830 326 aaPredicted RBP11.55□□□□□ -0.56
SNX1-208ENST00000559844 XGP55808 180 aa11.55□□□□□ -0.56
SNX1-208ENST00000559844 PLA2G2DQ9UNK4 145 aa11.55□□□□□ -0.56
SNX1-208ENST00000559844 OBSCN-AS1Q96MR7 158 aa11.54□□□□□ -0.56
SNX1-208ENST00000559844 RYR2Q92736 4967 aa11.54□□□□□ -0.56
SNX1-208ENST00000559844 NKAPP1Q8N9T2 125 aa11.53□□□□□ -0.56
SNX1-208ENST00000559844 H3BQ85 93 aa11.52□□□□□ -0.57
SNX1-208ENST00000559844 MT-ATP8P03928 68 aa11.52□□□□□ -0.57
SNX1-208ENST00000559844 COX7BP24311 80 aa11.52□□□□□ -0.57
SNX1-208ENST00000559844 LOC107984640A0A0U1RRK4 108 aa11.5□□□□□ -0.57
SNX1-208ENST00000559844 PSCAO43653 123 aa11.5□□□□□ -0.57
SNX1-208ENST00000559844 ELOF1P60002 83 aaKnown RBP11.5□□□□□ -0.57
SNX1-208ENST00000559844 Q6ZRN7 208 aaPredicted RBP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms