RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 PANO1I0J062 215 aa6.13□□□□□ -1.43
CUX1-216ENST00000558469 DLEU1O43261 78 aa6.13□□□□□ -1.43
CUX1-216ENST00000558469 TIMM17BO60830 172 aa6.13□□□□□ -1.43
CUX1-216ENST00000558469 ADAMTSL4-AS1Q5T5F5 129 aa6.13□□□□□ -1.43
CUX1-216ENST00000558469 LITAFQ99732 161 aa6.13□□□□□ -1.43
CUX1-216ENST00000558469 SND1-IT1Q9HBX3 110 aa6.13□□□□□ -1.43
CUX1-216ENST00000558469 FAM30AQ9NZY2 134 aa6.13□□□□□ -1.43
CUX1-216ENST00000558469 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.13□□□□□ -1.43
CUX1-216ENST00000558469 TMEM238C9JI98 176 aa6.12□□□□□ -1.43
CUX1-216ENST00000558469 NPC2P61916 151 aa6.12□□□□□ -1.43
CUX1-216ENST00000558469 C9orf129Q5T035 196 aaKnown RBP6.12□□□□□ -1.43
CUX1-216ENST00000558469 LINC00518Q8N0U6 118 aa6.12□□□□□ -1.43
CUX1-216ENST00000558469 SPACA4Q8TDM5 124 aa6.12□□□□□ -1.43
CUX1-216ENST00000558469 PRO1933Q9H354 126 aa6.12□□□□□ -1.43
CUX1-216ENST00000558469 LINC00474Q9P2X8 69 aa6.12□□□□□ -1.43
CUX1-216ENST00000558469 DNAH5Q8TE73 4624 aa6.11□□□□□ -1.43
CUX1-216ENST00000558469 KRTAP19-1Q8IUB9 90 aa6.11□□□□□ -1.43
CUX1-216ENST00000558469 FAM168BA1KXE4 195 aa6.1□□□□□ -1.43
CUX1-216ENST00000558469 SRSF9Q13242 221 aaKnown RBP eCLIP6.1□□□□□ -1.43
CUX1-216ENST00000558469 LCE3BQ5TA77 95 aa6.1□□□□□ -1.43
CUX1-216ENST00000558469 Q6ZSA8 131 aa6.1□□□□□ -1.43
CUX1-216ENST00000558469 SPANXDQ9BXN6 97 aa6.1□□□□□ -1.43
CUX1-216ENST00000558469 SPANXCQ9NY87 97 aa6.1□□□□□ -1.43
CUX1-216ENST00000558469 UQCR10Q9UDW1 63 aa6.1□□□□□ -1.43
CUX1-216ENST00000558469 A0A087WYN8 130 aa6.09□□□□□ -1.43
CUX1-216ENST00000558469 A0A1W2PNN7 141 aa6.09□□□□□ -1.43
CUX1-216ENST00000558469 C2orf91Q6ZV80 131 aa6.09□□□□□ -1.43
CUX1-216ENST00000558469 FAM19A5Q7Z5A7 132 aaPredicted RBP6.09□□□□□ -1.43
CUX1-216ENST00000558469 LINC00308Q8TCZ7 52 aa6.09□□□□□ -1.43
CUX1-216ENST00000558469 MIEN1Q9BRT3 115 aa6.09□□□□□ -1.43
CUX1-216ENST00000558469 SPANXB1Q9NS25 103 aaPredicted RBP6.09□□□□□ -1.43
CUX1-216ENST00000558469 HIGD1BQ9P298 99 aa6.09□□□□□ -1.43
CUX1-216ENST00000558469 HAMPP81172 84 aa6.08□□□□□ -1.44
CUX1-216ENST00000558469 SERTAD4-AS1Q5TG53 156 aa6.08□□□□□ -1.44
CUX1-216ENST00000558469 SOSTDC1Q6X4U4 206 aa6.08□□□□□ -1.44
CUX1-216ENST00000558469 Q6ZVH6 145 aa6.08□□□□□ -1.44
CUX1-216ENST00000558469 HIST1H4GQ99525 98 aa6.08□□□□□ -1.44
CUX1-216ENST00000558469 LOC107984156A0A0G2JMH3 177 aa6.07□□□□□ -1.44
CUX1-216ENST00000558469 IFITM1P13164 125 aa6.07□□□□□ -1.44
CUX1-216ENST00000558469 SCXQ7RTU7 201 aa6.07□□□□□ -1.44
CUX1-216ENST00000558469 KRTAP7-1Q8IUC3 87 aa6.07□□□□□ -1.44
CUX1-216ENST00000558469 MUSTN1Q8IVN3 82 aa6.07□□□□□ -1.44
CUX1-216ENST00000558469 ARL17AQ8IVW1 177 aa6.07□□□□□ -1.44
CUX1-216ENST00000558469 Q8NDZ9 215 aa6.07□□□□□ -1.44
CUX1-216ENST00000558469 CIRBP-AS1Q8TBR5 109 aa6.07□□□□□ -1.44
CUX1-216ENST00000558469 TSTD3H0UI37 97 aa6.06□□□□□ -1.44
CUX1-216ENST00000558469 HNRNPA3P51991 378 aaKnown RBP6.06□□□□□ -1.44
CUX1-216ENST00000558469 PRR3P79522 188 aaKnown RBP6.06□□□□□ -1.44
CUX1-216ENST00000558469 RPL24P83731 157 aaKnown RBP6.06□□□□□ -1.44
CUX1-216ENST00000558469 NKAPP1Q8N9T2 125 aa6.06□□□□□ -1.44
CUX1-216ENST00000558469 COPS9Q8WXC6 57 aa6.06□□□□□ -1.44
CUX1-216ENST00000558469 PLAC8Q9NZF1 115 aa6.06□□□□□ -1.44
CUX1-216ENST00000558469 PLA2G2DQ9UNK4 145 aa6.06□□□□□ -1.44
CUX1-216ENST00000558469 M0QXV9 152 aa6.05□□□□□ -1.44
CUX1-216ENST00000558469 VPREB1P12018 145 aa6.05□□□□□ -1.44
CUX1-216ENST00000558469 XGP55808 180 aa6.05□□□□□ -1.44
CUX1-216ENST00000558469 C22orf24Q9Y442 160 aa6.05□□□□□ -1.44
CUX1-216ENST00000558469 IGLV5-37A0A075B6J1 123 aa6.04□□□□□ -1.44
CUX1-216ENST00000558469 EPM2AB3EWF7 344 aa6.04□□□□□ -1.44
CUX1-216ENST00000558469 NCR3O14931 201 aa6.04□□□□□ -1.44
CUX1-216ENST00000558469 PHF5AQ7RTV0 110 aaKnown RBP6.04□□□□□ -1.44
CUX1-216ENST00000558469 EPPK1P58107 5090 aaKnown RBP6.04□□□□□ -1.44
CUX1-216ENST00000558469 DNAH8Q96JB1 4490 aa6.03□□□□□ -1.44
CUX1-216ENST00000558469 GAGE10A6NGK3 116 aa6.03□□□□□ -1.44
CUX1-216ENST00000558469 NDUFC2O95298 119 aa6.03□□□□□ -1.44
CUX1-216ENST00000558469 TAL2Q16559 108 aa6.03□□□□□ -1.44
CUX1-216ENST00000558469 MRPL55Q7Z7F7 128 aaKnown RBP6.03□□□□□ -1.44
CUX1-216ENST00000558469 PPDPFQ9H3Y8 114 aa6.03□□□□□ -1.44
CUX1-216ENST00000558469 A4D1N5 150 aa6.02□□□□□ -1.45
CUX1-216ENST00000558469 M0R378 163 aa6.02□□□□□ -1.45
CUX1-216ENST00000558469 CDK2AP2O75956 126 aa6.02□□□□□ -1.45
CUX1-216ENST00000558469 HSD52Q0P140 79 aa6.02□□□□□ -1.45
CUX1-216ENST00000558469 LBHQ53QV2 105 aaPredicted RBP6.02□□□□□ -1.45
CUX1-216ENST00000558469 CEND1Q8N111 149 aa6.02□□□□□ -1.45
CUX1-216ENST00000558469 C7orf33Q8WU49 177 aa6.02□□□□□ -1.45
CUX1-216ENST00000558469 LINC00167Q96N53 147 aa6.02□□□□□ -1.45
CUX1-216ENST00000558469 DYNC1H1Q14204 4646 aaKnown RBP6.02□□□□□ -1.45
CUX1-216ENST00000558469 LRP1BQ9NZR2 4599 aa6.02□□□□□ -1.45
CUX1-216ENST00000558469 IGKV2-28A0A075B6P5 120 aa6.01□□□□□ -1.45
CUX1-216ENST00000558469 RPL37AP8A6NKH3 93 aa6.01□□□□□ -1.45
CUX1-216ENST00000558469 H3BS24 57 aa6.01□□□□□ -1.45
CUX1-216ENST00000558469 IGKV2D-28P01615 120 aa6.01□□□□□ -1.45
CUX1-216ENST00000558469 UBE2BP63146 152 aa6.01□□□□□ -1.45
CUX1-216ENST00000558469 CTAG1AP78358 180 aa6.01□□□□□ -1.45
CUX1-216ENST00000558469 TRBV10-2A0A0K0K1G8 114 aa6□□□□□ -1.45
CUX1-216ENST00000558469 SMR3BP02814 79 aaPredicted RBP6□□□□□ -1.45
CUX1-216ENST00000558469 S100A7L2Q5SY68 101 aa6□□□□□ -1.45
CUX1-216ENST00000558469 OR13C6PQ8NH95 151 aa6□□□□□ -1.45
CUX1-216ENST00000558469 DDTP30046 118 aa5.99□□□□□ -1.45
CUX1-216ENST00000558469 FXYD2P54710 66 aa5.99□□□□□ -1.45
CUX1-216ENST00000558469 LINC00337Q8N6G1 96 aa5.99□□□□□ -1.45
CUX1-216ENST00000558469 IGLV1-50A0A075B6I6 118 aa5.98□□□□□ -1.45
CUX1-216ENST00000558469 TRBV10-3A0A0K0K1G6 114 aa5.98□□□□□ -1.45
CUX1-216ENST00000558469 A6NDN8 102 aa5.98□□□□□ -1.45
CUX1-216ENST00000558469 KRTAP11-1Q8IUC1 163 aa5.98□□□□□ -1.45
CUX1-216ENST00000558469 TRAV13-2A0A0B4J235 113 aa5.97□□□□□ -1.45
CUX1-216ENST00000558469 IGLV6-57P01721 117 aa5.97□□□□□ -1.45
CUX1-216ENST00000558469 CFC1BP0CG36 223 aa5.97□□□□□ -1.45
CUX1-216ENST00000558469 CFC1P0CG37 223 aa5.97□□□□□ -1.45
CUX1-216ENST00000558469 HINT1P49773 126 aaPredicted RBP5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms