RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 SDHAF1A6NFY7 115 aa5.78□□□□□ -1.48
USP3-208ENST00000558285 COX7CP15954 63 aa5.78□□□□□ -1.48
USP3-208ENST00000558285 LINC00643Q86TS7 51 aa5.78□□□□□ -1.48
USP3-208ENST00000558285 TRBV6-5A0A0K0K1A5 114 aa5.77□□□□□ -1.49
USP3-208ENST00000558285 VCYO14598 125 aa5.77□□□□□ -1.49
USP3-208ENST00000558285 KRTAP10-2P60368 255 aa5.77□□□□□ -1.49
USP3-208ENST00000558285 NRACQ8N912 160 aa5.77□□□□□ -1.49
USP3-208ENST00000558285 SCGB3A1Q96QR1 104 aa5.77□□□□□ -1.49
USP3-208ENST00000558285 SMIM2Q9BVW6 85 aa5.77□□□□□ -1.49
USP3-208ENST00000558285 PKIGQ9Y2B9 76 aa5.77□□□□□ -1.49
USP3-208ENST00000558285 LRCOL1A6NCL2 159 aa5.77□□□□□ -1.49
USP3-208ENST00000558285 C11orf86A6NJI1 115 aa5.77□□□□□ -1.49
USP3-208ENST00000558285 ATOX1O00244 68 aa5.77□□□□□ -1.49
USP3-208ENST00000558285 COX6CP09669 75 aa5.77□□□□□ -1.49
USP3-208ENST00000558285 REG3AQ06141 175 aa5.77□□□□□ -1.49
USP3-208ENST00000558285 LINC00269Q8N2A0 174 aa5.77□□□□□ -1.49
USP3-208ENST00000558285 EPPK1P58107 5090 aaKnown RBP5.76□□□□□ -1.49
USP3-208ENST00000558285 DNAH10Q8IVF4 4471 aa5.76□□□□□ -1.49
USP3-208ENST00000558285 TRAV26-2A0A0B4J265 109 aa5.76□□□□□ -1.49
USP3-208ENST00000558285 FAM236AA0A1B0GUQ0 79 aa5.76□□□□□ -1.49
USP3-208ENST00000558285 FAM236BA0A1B0GV22 79 aa5.76□□□□□ -1.49
USP3-208ENST00000558285 GAGE2AQ6NT46 116 aa5.76□□□□□ -1.49
USP3-208ENST00000558285 C2orf82Q6UX34 121 aa5.76□□□□□ -1.49
USP3-208ENST00000558285 NTM-AS1Q6ZSK4 140 aa5.76□□□□□ -1.49
USP3-208ENST00000558285 PRR34Q9NV39 138 aa5.76□□□□□ -1.49
USP3-208ENST00000558285 F8WDY8 70 aa5.75□□□□□ -1.49
USP3-208ENST00000558285 PLEKHB2Q96CS7 222 aa5.75□□□□□ -1.49
USP3-208ENST00000558285 TEX49A0A1B0GTD5 131 aa5.74□□□□□ -1.49
USP3-208ENST00000558285 SUMO2P61956 95 aaKnown RBP5.74□□□□□ -1.49
USP3-208ENST00000558285 ENHOQ6UWT2 76 aa5.74□□□□□ -1.49
USP3-208ENST00000558285 SDIM1Q6ZPB5 146 aa5.74□□□□□ -1.49
USP3-208ENST00000558285 RPL39LQ96EH5 51 aaKnown RBP5.74□□□□□ -1.49
USP3-208ENST00000558285 TMEM141Q96I45 108 aa5.74□□□□□ -1.49
USP3-208ENST00000558285 TRBV27A0A0K0K1C4 114 aa5.74□□□□□ -1.49
USP3-208ENST00000558285 TRIAP1O43715 76 aa5.74□□□□□ -1.49
USP3-208ENST00000558285 TRACP01848 142 aa5.74□□□□□ -1.49
USP3-208ENST00000558285 C5orf38Q86SI9 138 aa5.74□□□□□ -1.49
USP3-208ENST00000558285 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.73□□□□□ -1.49
USP3-208ENST00000558285 NDUFC2-KCTD14E9PQ53 114 aa5.73□□□□□ -1.49
USP3-208ENST00000558285 LECT2O14960 151 aa5.73□□□□□ -1.49
USP3-208ENST00000558285 HIST1H4AP62805 103 aaKnown RBP5.73□□□□□ -1.49
USP3-208ENST00000558285 SS18Q15532 418 aa5.73□□□□□ -1.49
USP3-208ENST00000558285 CLPSL2Q6UWE3 100 aa5.73□□□□□ -1.49
USP3-208ENST00000558285 Q8N1X5 172 aa5.73□□□□□ -1.49
USP3-208ENST00000558285 LOC107984640A0A0U1RRK4 108 aa5.72□□□□□ -1.49
USP3-208ENST00000558285 EPM2AB3EWF7 344 aa5.72□□□□□ -1.49
USP3-208ENST00000558285 USP17L23D6RBM5 183 aa5.72□□□□□ -1.49
USP3-208ENST00000558285 LGALS3P17931 250 aaKnown RBP5.72□□□□□ -1.49
USP3-208ENST00000558285 SERTAD4-AS1Q5TG53 156 aa5.72□□□□□ -1.49
USP3-208ENST00000558285 SFTA2Q6UW10 78 aa5.72□□□□□ -1.49
USP3-208ENST00000558285 LST1O00453 97 aa5.71□□□□□ -1.49
USP3-208ENST00000558285 LEPROTO15243 131 aa5.71□□□□□ -1.49
USP3-208ENST00000558285 Q1RN00 199 aa5.71□□□□□ -1.49
USP3-208ENST00000558285 C2orf66Q6UXQ4 117 aa5.71□□□□□ -1.49
USP3-208ENST00000558285 C20orf203Q8NBC4 194 aa5.71□□□□□ -1.49
USP3-208ENST00000558285 TIMM17AQ99595 171 aa5.71□□□□□ -1.49
USP3-208ENST00000558285 HECTD4Q9Y4D8 3996 aa5.71□□□□□ -1.5
USP3-208ENST00000558285 IGLV10-54A0A075B6I4 117 aa5.71□□□□□ -1.5
USP3-208ENST00000558285 J3QQQ9 107 aa5.71□□□□□ -1.5
USP3-208ENST00000558285 POLR2KP53803 58 aaKnown RBP5.71□□□□□ -1.5
USP3-208ENST00000558285 DAND5Q8N907 189 aa5.71□□□□□ -1.5
USP3-208ENST00000558285 AMELXQ99217 191 aa5.71□□□□□ -1.5
USP3-208ENST00000558285 IGLV4-69A0A075B6H9 119 aa5.7□□□□□ -1.5
USP3-208ENST00000558285 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.7□□□□□ -1.5
USP3-208ENST00000558285 IGKV3OR2-268A0A0C4DH90 116 aa5.7□□□□□ -1.5
USP3-208ENST00000558285 IGKV2-29A2NJV5 120 aaPredicted RBP5.7□□□□□ -1.5
USP3-208ENST00000558285 GAS8-AS1O95177 125 aa5.7□□□□□ -1.5
USP3-208ENST00000558285 PLA2G1BP04054 148 aaKnown RBP5.7□□□□□ -1.5
USP3-208ENST00000558285 KRTAP10-1P60331 282 aa5.7□□□□□ -1.5
USP3-208ENST00000558285 DPH3Q96FX2 82 aa5.7□□□□□ -1.5
USP3-208ENST00000558285 C2orf48Q96LS8 159 aa5.7□□□□□ -1.5
USP3-208ENST00000558285 DNAH17Q9UFH2 4485 aa5.69□□□□□ -1.5
USP3-208ENST00000558285 IGLV4-60A0A075B6I1 120 aa5.69□□□□□ -1.5
USP3-208ENST00000558285 TMEM223A0PJW6 202 aa5.69□□□□□ -1.5
USP3-208ENST00000558285 TSHBP01222 138 aa5.69□□□□□ -1.5
USP3-208ENST00000558285 CHCHD10Q8WYQ3 142 aaPredicted RBP5.69□□□□□ -1.5
USP3-208ENST00000558285 TIMM21Q9BVV7 248 aa5.69□□□□□ -1.5
USP3-208ENST00000558285 PRO0628Q9UI54 55 aa5.69□□□□□ -1.5
USP3-208ENST00000558285 INAFM2P0DMQ5 153 aa5.68□□□□□ -1.5
USP3-208ENST00000558285 FRAS1Q86XX4 4008 aa5.68□□□□□ -1.5
USP3-208ENST00000558285 IGHV3-64A0A075B6Q5 118 aa5.68□□□□□ -1.5
USP3-208ENST00000558285 CNBPP62633 177 aaKnown RBP5.68□□□□□ -1.5
USP3-208ENST00000558285 DNAH2Q9P225 4427 aa5.68□□□□□ -1.5
USP3-208ENST00000558285 FAT2Q9NYQ8 4349 aa5.67□□□□□ -1.5
USP3-208ENST00000558285 DNAH11Q96DT5 4516 aa5.67□□□□□ -1.5
USP3-208ENST00000558285 IGHV1-58A0A0C4DH39 117 aa5.67□□□□□ -1.5
USP3-208ENST00000558285 IGIPA6NJ69 53 aa5.67□□□□□ -1.5
USP3-208ENST00000558285 RPL18AQ02543 176 aaKnown RBP5.67□□□□□ -1.5
USP3-208ENST00000558285 SERP2Q8N6R1 65 aa5.67□□□□□ -1.5
USP3-208ENST00000558285 DEFB104AQ8WTQ1 72 aa5.67□□□□□ -1.5
USP3-208ENST00000558285 NDUFC2O95298 119 aa5.66□□□□□ -1.5
USP3-208ENST00000558285 FUSP35637 526 aaKnown RBP eCLIP5.66□□□□□ -1.5
USP3-208ENST00000558285 XCL1P47992 114 aa5.66□□□□□ -1.5
USP3-208ENST00000558285 CD164L2Q6UWJ8 174 aa5.66□□□□□ -1.5
USP3-208ENST00000558285 MUSTN1Q8IVN3 82 aa5.66□□□□□ -1.5
USP3-208ENST00000558285 C9orf163Q8N9P6 203 aa5.66□□□□□ -1.5
USP3-208ENST00000558285 CDC42SE2Q9NRR3 84 aa5.66□□□□□ -1.5
USP3-208ENST00000558285 LINC00474Q9P2X8 69 aa5.66□□□□□ -1.5
USP3-208ENST00000558285 A0A0J9YXY3 114 aa5.65□□□□□ -1.5
USP3-208ENST00000558285 LINC00959A0A1B0GUT2 108 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms