RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 LINC00337Q8N6G1 96 aa11.25□□□□□ -0.61
LDLR-206ENST00000557958 STAB2Q8WWQ8 2551 aa11.25□□□□□ -0.61
LDLR-206ENST00000557958 C9orf116Q5BN46 136 aaPredicted RBP11.23□□□□□ -0.61
LDLR-206ENST00000557958 C10orf25Q5T742 122 aa11.23□□□□□ -0.61
LDLR-206ENST00000557958 C2orf48Q96LS8 159 aa11.23□□□□□ -0.61
LDLR-206ENST00000557958 CAMK2N2Q96S95 79 aa11.23□□□□□ -0.61
LDLR-206ENST00000557958 LST1O00453 97 aa11.23□□□□□ -0.61
LDLR-206ENST00000557958 RPL28P46779 137 aaKnown RBP11.23□□□□□ -0.61
LDLR-206ENST00000557958 LINC00526Q96FQ7 95 aa11.23□□□□□ -0.61
LDLR-206ENST00000557958 Q9HAA7 133 aa11.23□□□□□ -0.61
LDLR-206ENST00000557958 APLNQ9ULZ1 77 aa11.23□□□□□ -0.61
LDLR-206ENST00000557958 OR13C6PQ8NH95 151 aa11.22□□□□□ -0.61
LDLR-206ENST00000557958 HIGD2BQ4VC39 106 aa11.21□□□□□ -0.61
LDLR-206ENST00000557958 UBE2DNLQ8IWF7 75 aa11.21□□□□□ -0.61
LDLR-206ENST00000557958 FBN3Q75N90 2809 aa11.21□□□□□ -0.62
LDLR-206ENST00000557958 C15orf56Q8N910 161 aa11.21□□□□□ -0.62
LDLR-206ENST00000557958 CLEC2BQ92478 149 aa11.21□□□□□ -0.62
LDLR-206ENST00000557958 C6orf48Q9UBA6 75 aa11.2□□□□□ -0.62
LDLR-206ENST00000557958 TEX49A0A1B0GTD5 131 aa11.17□□□□□ -0.62
LDLR-206ENST00000557958 FAM240AA0A1B0GVK7 77 aa11.17□□□□□ -0.62
LDLR-206ENST00000557958 SMIM11BQ8TCY0 68 aa11.17□□□□□ -0.62
LDLR-206ENST00000557958 TMEM126AQ9H061 195 aa11.17□□□□□ -0.62
LDLR-206ENST00000557958 H0YGX0 51 aa11.17□□□□□ -0.62
LDLR-206ENST00000557958 Q6Q795 121 aa11.17□□□□□ -0.62
LDLR-206ENST00000557958 SNCGO76070 127 aa11.16□□□□□ -0.62
LDLR-206ENST00000557958 TRACP01848 142 aa11.15□□□□□ -0.62
LDLR-206ENST00000557958 Q6ZRU5 148 aa11.15□□□□□ -0.63
LDLR-206ENST00000557958 WWC2-AS2Q96NR7 200 aa11.15□□□□□ -0.63
LDLR-206ENST00000557958 SYCNQ0VAF6 134 aa11.14□□□□□ -0.63
LDLR-206ENST00000557958 S100A7L2Q5SY68 101 aa11.13□□□□□ -0.63
LDLR-206ENST00000557958 NDUFC2-KCTD14E9PQ53 114 aa11.12□□□□□ -0.63
LDLR-206ENST00000557958 NCR3O14931 201 aa11.11□□□□□ -0.63
LDLR-206ENST00000557958 GAGE2BQ13066 116 aa11.11□□□□□ -0.63
LDLR-206ENST00000557958 GAGE2EQ4V326 116 aa11.11□□□□□ -0.63
LDLR-206ENST00000557958 ANAPC13Q9BS18 74 aa11.11□□□□□ -0.63
LDLR-206ENST00000557958 GAGE2DQ9UEU5 116 aa11.11□□□□□ -0.63
LDLR-206ENST00000557958 USP17L23D6RBM5 183 aa11.1□□□□□ -0.63
LDLR-206ENST00000557958 DNAL4O96015 105 aa11.1□□□□□ -0.63
LDLR-206ENST00000557958 PRR3P79522 188 aaKnown RBP11.1□□□□□ -0.63
LDLR-206ENST00000557958 CSMD3Q7Z407 3707 aa11.09□□□□□ -0.63
LDLR-206ENST00000557958 XAGE1AQ9HD64 81 aa11.08□□□□□ -0.64
LDLR-206ENST00000557958 TGP01266 2768 aa11.08□□□□□ -0.64
LDLR-206ENST00000557958 FAM218AQ96MZ4 157 aa11.06□□□□□ -0.64
LDLR-206ENST00000557958 NDUFV3P56181 108 aaKnown RBP11.06□□□□□ -0.64
LDLR-206ENST00000557958 RPL18AQ02543 176 aaKnown RBP11.06□□□□□ -0.64
LDLR-206ENST00000557958 TTC32Q5I0X7 151 aa11.06□□□□□ -0.64
LDLR-206ENST00000557958 Q8NDZ9 215 aa11.06□□□□□ -0.64
LDLR-206ENST00000557958 A0A1B0GX51 115 aa11.05□□□□□ -0.64
LDLR-206ENST00000557958 ACYP1P07311 99 aa11.05□□□□□ -0.64
LDLR-206ENST00000557958 IGLV6-57P01721 117 aa11.04□□□□□ -0.64
LDLR-206ENST00000557958 TLX1NBP0CAT3 122 aa11.04□□□□□ -0.64
LDLR-206ENST00000557958 CASC10Q5T4H9 136 aa11.04□□□□□ -0.64
LDLR-206ENST00000557958 DNAH7Q8WXX0 4024 aa11.04□□□□□ -0.64
LDLR-206ENST00000557958 STARD9Q9P2P6 4700 aa11.03□□□□□ -0.64
LDLR-206ENST00000557958 PSCAO43653 123 aa11.03□□□□□ -0.64
LDLR-206ENST00000557958 Q6ZRP5 223 aa11.03□□□□□ -0.64
LDLR-206ENST00000557958 LYSTQ99698 3801 aa11.03□□□□□ -0.64
LDLR-206ENST00000557958 A0A087WYN8 130 aa11.02□□□□□ -0.64
LDLR-206ENST00000557958 TRBV7-7A0A0K0K1E9 115 aa11.02□□□□□ -0.64
LDLR-206ENST00000557958 BAALC-AS2P0C853 105 aa11.02□□□□□ -0.64
LDLR-206ENST00000557958 M0R2N4 97 aa11.02□□□□□ -0.65
LDLR-206ENST00000557958 M0R378 163 aa11.02□□□□□ -0.65
LDLR-206ENST00000557958 VPREB1P12018 145 aa11.02□□□□□ -0.65
LDLR-206ENST00000557958 KRTAP1-5Q9BYS1 174 aa11.02□□□□□ -0.65
LDLR-206ENST00000557958 DYNC2H1Q8NCM8 4307 aaKnown RBP11.01□□□□□ -0.65
LDLR-206ENST00000557958 LECT2O14960 151 aa11.01□□□□□ -0.65
LDLR-206ENST00000557958 LY6G6CO95867 125 aa11.01□□□□□ -0.65
LDLR-206ENST00000557958 C6orf99Q4VX62 202 aa11.01□□□□□ -0.65
LDLR-206ENST00000557958 C14orf177Q52M58 125 aa11□□□□□ -0.65
LDLR-206ENST00000557958 PLECQ15149 4684 aaKnown RBP10.99□□□□□ -0.65
LDLR-206ENST00000557958 TRAV23DV6A0A075B6W5 121 aa10.99□□□□□ -0.65
LDLR-206ENST00000557958 TRBV10-3A0A0K0K1G6 114 aa10.99□□□□□ -0.65
LDLR-206ENST00000557958 C3orf84H3BNL1 204 aa10.99□□□□□ -0.65
LDLR-206ENST00000557958 TENM2Q9NT68 2774 aa10.99□□□□□ -0.65
LDLR-206ENST00000557958 NBDYA0A0U1RRE5 68 aa10.98□□□□□ -0.65
LDLR-206ENST00000557958 NKAPP1Q8N9T2 125 aa10.98□□□□□ -0.65
LDLR-206ENST00000557958 DIRC1Q969H9 104 aa10.98□□□□□ -0.65
LDLR-206ENST00000557958 IMUPQ9GZP8 106 aa10.97□□□□□ -0.65
LDLR-206ENST00000557958 ORMDL1Q9P0S3 153 aa10.97□□□□□ -0.65
LDLR-206ENST00000557958 LOC107984640A0A0U1RRK4 108 aa10.96□□□□□ -0.65
LDLR-206ENST00000557958 SLPIP03973 132 aa10.96□□□□□ -0.65
LDLR-206ENST00000557958 Q8N814 137 aa10.96□□□□□ -0.65
LDLR-206ENST00000557958 INAFM2P0DMQ5 153 aa10.95□□□□□ -0.66
LDLR-206ENST00000557958 C9orf129Q5T035 196 aaKnown RBP10.95□□□□□ -0.66
LDLR-206ENST00000557958 PLA2G2DQ9UNK4 145 aa10.95□□□□□ -0.66
LDLR-206ENST00000557958 SDIM1Q6ZPB5 146 aa10.95□□□□□ -0.66
LDLR-206ENST00000557958 C22orf24Q9Y442 160 aa10.95□□□□□ -0.66
LDLR-206ENST00000557958 TRBV7-6A0A0J9YX20 115 aa10.94□□□□□ -0.66
LDLR-206ENST00000557958 ZNF73O43830 326 aaPredicted RBP10.94□□□□□ -0.66
LDLR-206ENST00000557958 LINC00167Q96N53 147 aa10.94□□□□□ -0.66
LDLR-206ENST00000557958 LINC00575Q6W349 94 aa10.93□□□□□ -0.66
LDLR-206ENST00000557958 CNBPP62633 177 aaKnown RBP10.93□□□□□ -0.66
LDLR-206ENST00000557958 LINC00643Q86TS7 51 aa10.93□□□□□ -0.66
LDLR-206ENST00000557958 hADV29S1A0JD25 119 aa10.91□□□□□ -0.66
LDLR-206ENST00000557958 LINC00476Q8WZB0 136 aa10.91□□□□□ -0.66
LDLR-206ENST00000557958 PKIGQ9Y2B9 76 aa10.91□□□□□ -0.66
LDLR-206ENST00000557958 IGLV5-37A0A075B6J1 123 aa10.9□□□□□ -0.66
LDLR-206ENST00000557958 H3BQ85 93 aa10.9□□□□□ -0.66
LDLR-206ENST00000557958 TMEM256-PLSCR3K7ERE1 68 aa10.9□□□□□ -0.66
LDLR-206ENST00000557958 COX7BP24311 80 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms