RNA–Protein interactions for RNA: ENST00000557657.5

TMEM260-216, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,572 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-216ENST00000557657 KRTAP24-1Q3LI83 254 aa14.25□□□□□ -0.13
TMEM260-216ENST00000557657 CCDC179H3BU77 68 aa14.24□□□□□ -0.13
TMEM260-216ENST00000557657 NDUFC2O95298 119 aa14.24□□□□□ -0.13
TMEM260-216ENST00000557657 TMEM126AQ9H061 195 aa14.24□□□□□ -0.13
TMEM260-216ENST00000557657 RPL18AQ02543 176 aaKnown RBP14.23□□□□□ -0.13
TMEM260-216ENST00000557657 Q8N814 137 aa14.23□□□□□ -0.13
TMEM260-216ENST00000557657 ORMDL1Q9P0S3 153 aa14.23□□□□□ -0.13
TMEM260-216ENST00000557657 TRBV7-7A0A0K0K1E9 115 aa14.22□□□□□ -0.13
TMEM260-216ENST00000557657 S100A7L2Q5SY68 101 aa14.22□□□□□ -0.13
TMEM260-216ENST00000557657 C6orf48Q9UBA6 75 aa14.22□□□□□ -0.13
TMEM260-216ENST00000557657 COL6A5A8TX70 2615 aa14.21□□□□□ -0.13
TMEM260-216ENST00000557657 NBEAL1Q6ZS30 2694 aa14.21□□□□□ -0.14
TMEM260-216ENST00000557657 OBSCN-AS1Q96MR7 158 aa14.2□□□□□ -0.14
TMEM260-216ENST00000557657 SDIM1Q6ZPB5 146 aa14.2□□□□□ -0.14
TMEM260-216ENST00000557657 LINC00643Q86TS7 51 aa14.19□□□□□ -0.14
TMEM260-216ENST00000557657 A0A0J9YWU9 116 aa14.19□□□□□ -0.14
TMEM260-216ENST00000557657 FAM236AA0A1B0GUQ0 79 aa14.19□□□□□ -0.14
TMEM260-216ENST00000557657 FAM236BA0A1B0GV22 79 aa14.19□□□□□ -0.14
TMEM260-216ENST00000557657 B5MCH6 92 aa14.19□□□□□ -0.14
TMEM260-216ENST00000557657 ESRGQ1W209 222 aa14.19□□□□□ -0.14
TMEM260-216ENST00000557657 LINC00846Q9NV44 126 aa14.18□□□□□ -0.14
TMEM260-216ENST00000557657 PRB2P02812 416 aaPredicted RBP14.16□□□□□ -0.14
TMEM260-216ENST00000557657 DNAH3Q8TD57 4116 aa14.16□□□□□ -0.14
TMEM260-216ENST00000557657 LINC00167Q96N53 147 aa14.15□□□□□ -0.14
TMEM260-216ENST00000557657 KRTAP26-1Q6PEX3 210 aa14.14□□□□□ -0.15
TMEM260-216ENST00000557657 IGKV3D-7A0A0C4DH55 119 aa14.13□□□□□ -0.15
TMEM260-216ENST00000557657 C3orf56Q8N813 242 aa14.13□□□□□ -0.15
TMEM260-216ENST00000557657 TRBV10-3A0A0K0K1G6 114 aa14.12□□□□□ -0.15
TMEM260-216ENST00000557657 LINC00575Q6W349 94 aa14.11□□□□□ -0.15
TMEM260-216ENST00000557657 ZNF561-AS1K7EIQ3 104 aa14.11□□□□□ -0.15
TMEM260-216ENST00000557657 CAMK2N2Q96S95 79 aa14.11□□□□□ -0.15
TMEM260-216ENST00000557657 SS18L2Q9UHA2 77 aa14.11□□□□□ -0.15
TMEM260-216ENST00000557657 IGLV6-57P01721 117 aa14.1□□□□□ -0.15
TMEM260-216ENST00000557657 Q6ZRU5 148 aa14.1□□□□□ -0.15
TMEM260-216ENST00000557657 EGFEM1PQ0D2K5 195 aa14.1□□□□□ -0.15
TMEM260-216ENST00000557657 C15orf56Q8N910 161 aa14.09□□□□□ -0.15
TMEM260-216ENST00000557657 DEFB131BA0A096LNP1 70 aa14.09□□□□□ -0.15
TMEM260-216ENST00000557657 GVQW2A0A096LPI5 108 aaPredicted RBP14.07□□□□□ -0.16
TMEM260-216ENST00000557657 TMEM256-PLSCR3K7ERE1 68 aa14.06□□□□□ -0.16
TMEM260-216ENST00000557657 hADV29S1A0JD25 119 aa14.06□□□□□ -0.16
TMEM260-216ENST00000557657 C11orf45Q8TAV5 145 aa14.06□□□□□ -0.16
TMEM260-216ENST00000557657 IMUPQ9GZP8 106 aa14.06□□□□□ -0.16
TMEM260-216ENST00000557657 BAHCC1Q9P281 2608 aa14.05□□□□□ -0.16
TMEM260-216ENST00000557657 IGKV2D-24A0A075B6R9 120 aa14.05□□□□□ -0.16
TMEM260-216ENST00000557657 A0A1B0GX51 115 aa14.05□□□□□ -0.16
TMEM260-216ENST00000557657 H3BNG1 76 aa14.05□□□□□ -0.16
TMEM260-216ENST00000557657 A0A087WVE0 104 aa14.05□□□□□ -0.16
TMEM260-216ENST00000557657 CCKP06307 115 aa14.04□□□□□ -0.16
TMEM260-216ENST00000557657 Q6ZQY7 126 aa14.03□□□□□ -0.16
TMEM260-216ENST00000557657 TRAV23DV6A0A075B6W5 121 aa14.02□□□□□ -0.16
TMEM260-216ENST00000557657 M0R2N4 97 aa14.02□□□□□ -0.17
TMEM260-216ENST00000557657 C1orf43Q9BWL3 253 aa14.01□□□□□ -0.17
TMEM260-216ENST00000557657 HUWE1Q7Z6Z7 4374 aaKnown RBP14.01□□□□□ -0.17
TMEM260-216ENST00000557657 LYSTQ99698 3801 aa14.01□□□□□ -0.17
TMEM260-216ENST00000557657 VPREB1P12018 145 aa14□□□□□ -0.17
TMEM260-216ENST00000557657 MGAM2Q2M2H8 2515 aa14□□□□□ -0.17
TMEM260-216ENST00000557657 JMJD7-PLA2G4BH0Y9G9 81 aa13.99□□□□□ -0.17
TMEM260-216ENST00000557657 Q6ZRP5 223 aa13.99□□□□□ -0.17
TMEM260-216ENST00000557657 MRAPQ8TCY5 172 aa13.99□□□□□ -0.17
TMEM260-216ENST00000557657 LAMTOR3Q9UHA4 124 aa13.99□□□□□ -0.17
TMEM260-216ENST00000557657 MUC7Q8TAX7 377 aa13.98□□□□□ -0.17
TMEM260-216ENST00000557657 ZNF73O43830 326 aaPredicted RBP13.98□□□□□ -0.17
TMEM260-216ENST00000557657 DIRC1Q969H9 104 aa13.97□□□□□ -0.17
TMEM260-216ENST00000557657 LINC01556Q5JQF7 62 aa13.96□□□□□ -0.17
TMEM260-216ENST00000557657 CASC10Q5T4H9 136 aa13.95□□□□□ -0.18
TMEM260-216ENST00000557657 Q6JHZ5 121 aa13.95□□□□□ -0.18
TMEM260-216ENST00000557657 NDUFC2-KCTD14E9PQ53 114 aa13.94□□□□□ -0.18
TMEM260-216ENST00000557657 DNAH1Q9P2D7 4330 aa13.94□□□□□ -0.18
TMEM260-216ENST00000557657 RBM3P98179 157 aaKnown RBP13.93□□□□□ -0.18
TMEM260-216ENST00000557657 COX7BP24311 80 aa13.91□□□□□ -0.18
TMEM260-216ENST00000557657 HIST1H4AP62805 103 aaKnown RBP13.91□□□□□ -0.18
TMEM260-216ENST00000557657 Q6ZQT0 140 aa13.91□□□□□ -0.18
TMEM260-216ENST00000557657 LINC00588Q9Y4M8 146 aa13.9□□□□□ -0.18
TMEM260-216ENST00000557657 DNAH10Q8IVF4 4471 aa13.9□□□□□ -0.18
TMEM260-216ENST00000557657 SYCNQ0VAF6 134 aa13.89□□□□□ -0.19
TMEM260-216ENST00000557657 C2orf48Q96LS8 159 aa13.89□□□□□ -0.19
TMEM260-216ENST00000557657 COL7A1Q02388 2944 aa13.89□□□□□ -0.19
TMEM260-216ENST00000557657 ELOF1P60002 83 aaKnown RBP13.89□□□□□ -0.19
TMEM260-216ENST00000557657 M0R378 163 aa13.88□□□□□ -0.19
TMEM260-216ENST00000557657 SERTAD4-AS1Q5TG53 156 aa13.88□□□□□ -0.19
TMEM260-216ENST00000557657 STAB2Q8WWQ8 2551 aa13.88□□□□□ -0.19
TMEM260-216ENST00000557657 FAM19A1Q7Z5A9 133 aa13.88□□□□□ -0.19
TMEM260-216ENST00000557657 DNAH10OSP0CZ25 163 aa13.86□□□□□ -0.19
TMEM260-216ENST00000557657 FAM168BA1KXE4 195 aa13.84□□□□□ -0.19
TMEM260-216ENST00000557657 C3orf22Q8N5N4 141 aa13.84□□□□□ -0.19
TMEM260-216ENST00000557657 K7EIL1 84 aa13.83□□□□□ -0.2
TMEM260-216ENST00000557657 C9orf153Q5TBE3 101 aa13.83□□□□□ -0.2
TMEM260-216ENST00000557657 DSCR8Q96T75 97 aa13.82□□□□□ -0.2
TMEM260-216ENST00000557657 LINC00528Q8N1L1 170 aa13.81□□□□□ -0.2
TMEM260-216ENST00000557657 TENM2Q9NT68 2774 aa13.81□□□□□ -0.2
TMEM260-216ENST00000557657 LOC110117498A0A087WWA1 95 aa13.81□□□□□ -0.2
TMEM260-216ENST00000557657 TRAV10A0A0B4J240 114 aa13.81□□□□□ -0.2
TMEM260-216ENST00000557657 UBL5Q9BZL1 73 aa13.81□□□□□ -0.2
TMEM260-216ENST00000557657 USP17L23D6RBM5 183 aa13.8□□□□□ -0.2
TMEM260-216ENST00000557657 CYSTM1Q9H1C7 97 aa13.8□□□□□ -0.2
TMEM260-216ENST00000557657 CSMD3Q7Z407 3707 aa13.8□□□□□ -0.2
TMEM260-216ENST00000557657 RPL37AP8A6NKH3 93 aa13.79□□□□□ -0.2
TMEM260-216ENST00000557657 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.79□□□□□ -0.2
TMEM260-216ENST00000557657 C7orf33Q8WU49 177 aa13.79□□□□□ -0.2
TMEM260-216ENST00000557657 UQCRQO14949 82 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms