RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 C6orf99Q4VX62 202 aa11.14□□□□□ -0.63
SHMT2-232ENST00000557487 CLPSL2Q6UWE3 100 aa11.14□□□□□ -0.63
SHMT2-232ENST00000557487 MDFIQ99750 246 aa11.14□□□□□ -0.63
SHMT2-232ENST00000557487 NOTCH3Q9UM47 2321 aa11.14□□□□□ -0.63
SHMT2-232ENST00000557487 PDE6GP18545 87 aa11.13□□□□□ -0.63
SHMT2-232ENST00000557487 PRR3P79522 188 aaKnown RBP11.13□□□□□ -0.63
SHMT2-232ENST00000557487 WNK1Q9H4A3 2382 aa11.13□□□□□ -0.63
SHMT2-232ENST00000557487 RBM3P98179 157 aaKnown RBP11.12□□□□□ -0.63
SHMT2-232ENST00000557487 ANGP03950 147 aaKnown RBP11.11□□□□□ -0.63
SHMT2-232ENST00000557487 C6orf223Q8N319 242 aa11.11□□□□□ -0.63
SHMT2-232ENST00000557487 A0A0J9YWU9 116 aa11.11□□□□□ -0.63
SHMT2-232ENST00000557487 IGHV4-30-4P0DP06 118 aa11.11□□□□□ -0.63
SHMT2-232ENST00000557487 Q6ZQT0 140 aa11.11□□□□□ -0.63
SHMT2-232ENST00000557487 GHRHP01286 108 aa11.1□□□□□ -0.63
SHMT2-232ENST00000557487 LOC107984640A0A0U1RRK4 108 aa11.09□□□□□ -0.63
SHMT2-232ENST00000557487 DPH3Q96FX2 82 aa11.09□□□□□ -0.63
SHMT2-232ENST00000557487 IGLV6-57P01721 117 aa11.09□□□□□ -0.63
SHMT2-232ENST00000557487 FAM19A5Q7Z5A7 132 aaPredicted RBP11.09□□□□□ -0.63
SHMT2-232ENST00000557487 SPATA3Q8NHX4 192 aa11.09□□□□□ -0.63
SHMT2-232ENST00000557487 ENHOQ6UWT2 76 aa11.08□□□□□ -0.64
SHMT2-232ENST00000557487 LINC00482Q8N8I6 264 aa11.08□□□□□ -0.64
SHMT2-232ENST00000557487 A0A096LPF7 62 aa11.07□□□□□ -0.64
SHMT2-232ENST00000557487 GVQW2A0A096LPI5 108 aaPredicted RBP11.07□□□□□ -0.64
SHMT2-232ENST00000557487 SPAG11BQ08648 103 aa11.07□□□□□ -0.64
SHMT2-232ENST00000557487 CYSTM1Q9H1C7 97 aa11.07□□□□□ -0.64
SHMT2-232ENST00000557487 C9orf66Q5T8R8 295 aa11.06□□□□□ -0.64
SHMT2-232ENST00000557487 FBN1P35555 2871 aaKnown RBP11.06□□□□□ -0.64
SHMT2-232ENST00000557487 C9orf116Q5BN46 136 aaPredicted RBP11.05□□□□□ -0.64
SHMT2-232ENST00000557487 IGLV10-54A0A075B6I4 117 aa11.05□□□□□ -0.64
SHMT2-232ENST00000557487 LELP1Q5T871 98 aa11.05□□□□□ -0.64
SHMT2-232ENST00000557487 FAM19A1Q7Z5A9 133 aa11.05□□□□□ -0.64
SHMT2-232ENST00000557487 DSCR8Q96T75 97 aa11.05□□□□□ -0.64
SHMT2-232ENST00000557487 LAMTOR3Q9UHA4 124 aa11.05□□□□□ -0.64
SHMT2-232ENST00000557487 ATRQ13535 2644 aa11.05□□□□□ -0.64
SHMT2-232ENST00000557487 TRAV23DV6A0A075B6W5 121 aa11.04□□□□□ -0.64
SHMT2-232ENST00000557487 DAD1P61803 113 aa11.04□□□□□ -0.64
SHMT2-232ENST00000557487 Q8NDZ9 215 aa11.04□□□□□ -0.64
SHMT2-232ENST00000557487 APOC4P55056 127 aa11.03□□□□□ -0.64
SHMT2-232ENST00000557487 C5orf47Q569G3 176 aa11.03□□□□□ -0.64
SHMT2-232ENST00000557487 CXCL6P80162 114 aa11.03□□□□□ -0.64
SHMT2-232ENST00000557487 UNQ6190/PRO20217Q6UXQ8 127 aa11.03□□□□□ -0.64
SHMT2-232ENST00000557487 PRR34Q9NV39 138 aa11.03□□□□□ -0.64
SHMT2-232ENST00000557487 TRAV7A0A075B6U4 112 aa11.02□□□□□ -0.65
SHMT2-232ENST00000557487 TRBV7-6A0A0J9YX20 115 aa11.02□□□□□ -0.65
SHMT2-232ENST00000557487 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.01□□□□□ -0.65
SHMT2-232ENST00000557487 DIRC1Q969H9 104 aa11.01□□□□□ -0.65
SHMT2-232ENST00000557487 MIFP14174 115 aa11□□□□□ -0.65
SHMT2-232ENST00000557487 C10orf25Q5T742 122 aa11□□□□□ -0.65
SHMT2-232ENST00000557487 WFDC9Q8NEX5 89 aa11□□□□□ -0.65
SHMT2-232ENST00000557487 LINC01547P58512 204 aaPredicted RBP10.99□□□□□ -0.65
SHMT2-232ENST00000557487 Q6ZQY7 126 aa10.99□□□□□ -0.65
SHMT2-232ENST00000557487 Q6ZVQ6 151 aa10.99□□□□□ -0.65
SHMT2-232ENST00000557487 COL6A5A8TX70 2615 aa10.98□□□□□ -0.65
SHMT2-232ENST00000557487 Q8N3U1 123 aa10.97□□□□□ -0.65
SHMT2-232ENST00000557487 SPART-AS1P0CW21 52 aa10.97□□□□□ -0.65
SHMT2-232ENST00000557487 DEFB135Q30KP9 77 aa10.96□□□□□ -0.65
SHMT2-232ENST00000557487 COX7BP24311 80 aa10.96□□□□□ -0.66
SHMT2-232ENST00000557487 KRTAP10-3P60369 221 aa10.96□□□□□ -0.66
SHMT2-232ENST00000557487 TRBV7-4A0A0J9YYF1 115 aa10.95□□□□□ -0.66
SHMT2-232ENST00000557487 C20orf197Q8N268 126 aa10.95□□□□□ -0.66
SHMT2-232ENST00000557487 ZNF73O43830 326 aaPredicted RBP10.94□□□□□ -0.66
SHMT2-232ENST00000557487 HAMPP81172 84 aa10.94□□□□□ -0.66
SHMT2-232ENST00000557487 Q8NAQ8 132 aa10.94□□□□□ -0.66
SHMT2-232ENST00000557487 ELOF1P60002 83 aaKnown RBP10.94□□□□□ -0.66
SHMT2-232ENST00000557487 KLKP1Q107X0 134 aa10.94□□□□□ -0.66
SHMT2-232ENST00000557487 KLK12Q9UKR0 248 aa10.94□□□□□ -0.66
SHMT2-232ENST00000557487 FAM236DA0A1B0GTK5 79 aa10.93□□□□□ -0.66
SHMT2-232ENST00000557487 FAM236CP0DP71 79 aa10.93□□□□□ -0.66
SHMT2-232ENST00000557487 C6orf48Q9UBA6 75 aa10.93□□□□□ -0.66
SHMT2-232ENST00000557487 DEFB4AO15263 64 aa10.91□□□□□ -0.66
SHMT2-232ENST00000557487 CELA1Q9UNI1 258 aa10.9□□□□□ -0.66
SHMT2-232ENST00000557487 M0R2N4 97 aa10.9□□□□□ -0.67
SHMT2-232ENST00000557487 M0R378 163 aa10.9□□□□□ -0.67
SHMT2-232ENST00000557487 OXTP01178 125 aa10.9□□□□□ -0.67
SHMT2-232ENST00000557487 EGFEM1PQ0D2K5 195 aa10.9□□□□□ -0.67
SHMT2-232ENST00000557487 NDUFC1O43677 76 aa10.89□□□□□ -0.67
SHMT2-232ENST00000557487 SERP1Q9Y6X1 66 aa10.89□□□□□ -0.67
SHMT2-232ENST00000557487 DNHD1Q96M86 4753 aa10.89□□□□□ -0.67
SHMT2-232ENST00000557487 H7BZZ5 65 aa10.88□□□□□ -0.67
SHMT2-232ENST00000557487 EPM2AB3EWF7 344 aa10.88□□□□□ -0.67
SHMT2-232ENST00000557487 F8WDY8 70 aa10.88□□□□□ -0.67
SHMT2-232ENST00000557487 VPREB1P12018 145 aa10.88□□□□□ -0.67
SHMT2-232ENST00000557487 H3BNG1 76 aa10.86□□□□□ -0.67
SHMT2-232ENST00000557487 WIPF1O43516 503 aa10.86□□□□□ -0.67
SHMT2-232ENST00000557487 CAMK2N2Q96S95 79 aa10.86□□□□□ -0.67
SHMT2-232ENST00000557487 XAGE1AQ9HD64 81 aa10.86□□□□□ -0.67
SHMT2-232ENST00000557487 HTN3P15516 51 aa10.85□□□□□ -0.67
SHMT2-232ENST00000557487 TRAV10A0A0B4J240 114 aa10.84□□□□□ -0.67
SHMT2-232ENST00000557487 ERC2-IT1O76042 136 aa10.84□□□□□ -0.67
SHMT2-232ENST00000557487 ATP5EP56381 51 aaPredicted RBP10.84□□□□□ -0.67
SHMT2-232ENST00000557487 Q5XG85 94 aa10.84□□□□□ -0.67
SHMT2-232ENST00000557487 LINC00528Q8N1L1 170 aa10.84□□□□□ -0.67
SHMT2-232ENST00000557487 STAB1Q9NY15 2570 aa10.84□□□□□ -0.67
SHMT2-232ENST00000557487 ANK2Q01484 3957 aa10.83□□□□□ -0.68
SHMT2-232ENST00000557487 TENM1Q9UKZ4 2725 aa10.8□□□□□ -0.68
SHMT2-232ENST00000557487 KRTAP26-1Q6PEX3 210 aa10.8□□□□□ -0.68
SHMT2-232ENST00000557487 A0A1B0GW54 56 aa10.78□□□□□ -0.68
SHMT2-232ENST00000557487 Q6ZRU5 148 aa10.77□□□□□ -0.69
SHMT2-232ENST00000557487 C4orf26Q17RF5 130 aa10.76□□□□□ -0.69
SHMT2-232ENST00000557487 HIGD2BQ4VC39 106 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms