RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 DAND5Q8N907 189 aa7.12□□□□□ -1.27
SCAF11-208ENST00000546534 COX7B2Q8TF08 81 aa7.12□□□□□ -1.27
SCAF11-208ENST00000546534 M0R378 163 aa7.11□□□□□ -1.27
SCAF11-208ENST00000546534 Q8N8P6 123 aa7.11□□□□□ -1.27
SCAF11-208ENST00000546534 HIGD2AQ9BW72 106 aa7.11□□□□□ -1.27
SCAF11-208ENST00000546534 MAP1LC3AQ9H492 121 aa7.11□□□□□ -1.27
SCAF11-208ENST00000546534 NAT8Q9UHE5 227 aa7.11□□□□□ -1.27
SCAF11-208ENST00000546534 PDZD11Q5EBL8 140 aa7.1□□□□□ -1.27
SCAF11-208ENST00000546534 Q8NBF4 154 aa7.1□□□□□ -1.27
SCAF11-208ENST00000546534 SPRR4Q96PI1 79 aa7.1□□□□□ -1.27
SCAF11-208ENST00000546534 GNB1LQ9BYB4 327 aa7.1□□□□□ -1.27
SCAF11-208ENST00000546534 CFC1BP0CG36 223 aa7.09□□□□□ -1.27
SCAF11-208ENST00000546534 VPREB1P12018 145 aa7.09□□□□□ -1.27
SCAF11-208ENST00000546534 ORMDL2Q53FV1 153 aa7.09□□□□□ -1.27
SCAF11-208ENST00000546534 PAPPA-AS1Q5QFB9 102 aa7.09□□□□□ -1.27
SCAF11-208ENST00000546534 LAMTOR2Q9Y2Q5 125 aa7.09□□□□□ -1.27
SCAF11-208ENST00000546534 C9JQL5 133 aa7.08□□□□□ -1.28
SCAF11-208ENST00000546534 A0A1B0GVG6 124 aa7.07□□□□□ -1.28
SCAF11-208ENST00000546534 SPINK1P00995 79 aa7.07□□□□□ -1.28
SCAF11-208ENST00000546534 ATP5L2Q7Z4Y8 100 aa7.07□□□□□ -1.28
SCAF11-208ENST00000546534 IGLV5-45A0A087WSX0 123 aa7.06□□□□□ -1.28
SCAF11-208ENST00000546534 TINCRA0A1B0GVN0 87 aa7.06□□□□□ -1.28
SCAF11-208ENST00000546534 SPINK8P0C7L1 97 aa7.06□□□□□ -1.28
SCAF11-208ENST00000546534 PFN2P35080 140 aa7.06□□□□□ -1.28
SCAF11-208ENST00000546534 TIMM17AQ99595 171 aa7.06□□□□□ -1.28
SCAF11-208ENST00000546534 K7EMI3 77 aa7.05□□□□□ -1.28
SCAF11-208ENST00000546534 KRTAP10-6P60371 365 aaPredicted RBP7.05□□□□□ -1.28
SCAF11-208ENST00000546534 Q8NDZ9 215 aa7.05□□□□□ -1.28
SCAF11-208ENST00000546534 SVIPQ8NHG7 77 aa7.05□□□□□ -1.28
SCAF11-208ENST00000546534 SND1-IT1Q9HBX3 110 aa7.05□□□□□ -1.28
SCAF11-208ENST00000546534 ATP5LO75964 103 aa7.04□□□□□ -1.28
SCAF11-208ENST00000546534 TOMM6Q96B49 74 aa7.04□□□□□ -1.28
SCAF11-208ENST00000546534 NDUFA12Q9UI09 145 aa7.04□□□□□ -1.28
SCAF11-208ENST00000546534 ZNF706Q9Y5V0 76 aaPredicted RBP7.04□□□□□ -1.28
SCAF11-208ENST00000546534 RAB14P61106 215 aa7.03□□□□□ -1.28
SCAF11-208ENST00000546534 RPL24P83731 157 aaKnown RBP7.03□□□□□ -1.28
SCAF11-208ENST00000546534 ERASQ7Z444 233 aa7.03□□□□□ -1.28
SCAF11-208ENST00000546534 Q8N377 158 aa7.03□□□□□ -1.28
SCAF11-208ENST00000546534 NXT2Q9NPJ8 142 aaKnown RBP7.03□□□□□ -1.28
SCAF11-208ENST00000546534 SCGB3A1Q96QR1 104 aa7.02□□□□□ -1.29
SCAF11-208ENST00000546534 ADCYAP1P18509 176 aa7.01□□□□□ -1.29
SCAF11-208ENST00000546534 G0S2P27469 103 aa7.01□□□□□ -1.29
SCAF11-208ENST00000546534 FAM19A2Q8N3H0 131 aa7□□□□□ -1.29
SCAF11-208ENST00000546534 CST9LQ9H4G1 147 aa7□□□□□ -1.29
SCAF11-208ENST00000546534 ERG28Q9UKR5 140 aa7□□□□□ -1.29
SCAF11-208ENST00000546534 RPS29P62273 56 aaKnown RBP6.99□□□□□ -1.29
SCAF11-208ENST00000546534 SLC25A20O43772 301 aa6.98□□□□□ -1.29
SCAF11-208ENST00000546534 SMCR5Q8TEV8 140 aa6.98□□□□□ -1.29
SCAF11-208ENST00000546534 IGLV8-61A0A075B6I0 122 aa6.97□□□□□ -1.29
SCAF11-208ENST00000546534 IGLV5-39A0A0G2JS06 123 aa6.97□□□□□ -1.29
SCAF11-208ENST00000546534 H3BRM9 83 aa6.97□□□□□ -1.29
SCAF11-208ENST00000546534 PEA15Q15121 130 aa6.97□□□□□ -1.29
SCAF11-208ENST00000546534 PCOTHQ58A44 107 aa6.97□□□□□ -1.29
SCAF11-208ENST00000546534 ZNF625Q96I27 306 aaPredicted RBP6.97□□□□□ -1.29
SCAF11-208ENST00000546534 MOBPQ13875 183 aa6.96□□□□□ -1.3
SCAF11-208ENST00000546534 COX17Q14061 63 aa6.96□□□□□ -1.3
SCAF11-208ENST00000546534 LINC00483Q53H64 154 aa6.96□□□□□ -1.3
SCAF11-208ENST00000546534 AKAP14Q86UN6 197 aa6.96□□□□□ -1.3
SCAF11-208ENST00000546534 IGLV9-49A0A0B4J1Y8 123 aa6.95□□□□□ -1.3
SCAF11-208ENST00000546534 PMVKQ15126 192 aa6.95□□□□□ -1.3
SCAF11-208ENST00000546534 M0R2T5 61 aa6.94□□□□□ -1.3
SCAF11-208ENST00000546534 GAGE2AQ6NT46 116 aa6.94□□□□□ -1.3
SCAF11-208ENST00000546534 SSBP3-AS1Q7Z2R9 100 aa6.94□□□□□ -1.3
SCAF11-208ENST00000546534 PRYO14603 147 aa6.93□□□□□ -1.3
SCAF11-208ENST00000546534 SPRR1AP35321 89 aa6.93□□□□□ -1.3
SCAF11-208ENST00000546534 KRTAP15-1Q3LI76 137 aa6.93□□□□□ -1.3
SCAF11-208ENST00000546534 KRTAP4-16G5E9R7 235 aaPredicted RBP6.92□□□□□ -1.3
SCAF11-208ENST00000546534 KIAA1644Q3SXP7 199 aa6.92□□□□□ -1.3
SCAF11-208ENST00000546534 ETDCA0A1B0GVM5 59 aa6.91□□□□□ -1.3
SCAF11-208ENST00000546534 LINC01549A6NIU2 74 aa6.91□□□□□ -1.3
SCAF11-208ENST00000546534 IGLC3P0DOY3 106 aa6.91□□□□□ -1.3
SCAF11-208ENST00000546534 ZNF22P17026 224 aaPredicted RBP6.91□□□□□ -1.3
SCAF11-208ENST00000546534 KCNQ1DNQ9H478 68 aa6.91□□□□□ -1.3
SCAF11-208ENST00000546534 ERC2-IT1O76042 136 aa6.9□□□□□ -1.3
SCAF11-208ENST00000546534 LINC00158P58513 81 aa6.9□□□□□ -1.3
SCAF11-208ENST00000546534 LINC01546A6NGU7 62 aa6.89□□□□□ -1.31
SCAF11-208ENST00000546534 A0A0U1RRA0 63 aa6.88□□□□□ -1.31
SCAF11-208ENST00000546534 NCR3O14931 201 aa6.88□□□□□ -1.31
SCAF11-208ENST00000546534 MT-ND4LP03901 98 aa6.88□□□□□ -1.31
SCAF11-208ENST00000546534 C9orf92A6NGG3 77 aa6.87□□□□□ -1.31
SCAF11-208ENST00000546534 SFTA2Q6UW10 78 aa6.87□□□□□ -1.31
SCAF11-208ENST00000546534 BOD1L2Q8IYS8 172 aa6.87□□□□□ -1.31
SCAF11-208ENST00000546534 TRBV10-3A0A0K0K1G6 114 aa6.86□□□□□ -1.31
SCAF11-208ENST00000546534 NDUFA6P56556 154 aa6.86□□□□□ -1.31
SCAF11-208ENST00000546534 C9orf153Q5TBE3 101 aa6.84□□□□□ -1.31
SCAF11-208ENST00000546534 COX6B2Q6YFQ2 88 aa6.84□□□□□ -1.31
SCAF11-208ENST00000546534 Q9BRP9 147 aa6.84□□□□□ -1.31
SCAF11-208ENST00000546534 C11orf86A6NJI1 115 aa6.83□□□□□ -1.32
SCAF11-208ENST00000546534 TRAV9-1A0A075B6T8 112 aa6.82□□□□□ -1.32
SCAF11-208ENST00000546534 ATP6V1G1O75348 118 aa6.82□□□□□ -1.32
SCAF11-208ENST00000546534 SMIM13P0DJ93 91 aa6.82□□□□□ -1.32
SCAF11-208ENST00000546534 TMEM170BQ5T4T1 132 aa6.82□□□□□ -1.32
SCAF11-208ENST00000546534 FA2HQ7L5A8 372 aa6.82□□□□□ -1.32
SCAF11-208ENST00000546534 MIR7-3HGQ8N6C7 128 aa6.81□□□□□ -1.32
SCAF11-208ENST00000546534 SMCO4Q9NRQ5 59 aa6.81□□□□□ -1.32
SCAF11-208ENST00000546534 SSPOA2VEC9 5147 aa6.81□□□□□ -1.32
SCAF11-208ENST00000546534 A0A096LNJ9 63 aa6.8□□□□□ -1.32
SCAF11-208ENST00000546534 Q6ZRX8 168 aa6.8□□□□□ -1.32
SCAF11-208ENST00000546534 USH2AO75445 5202 aa6.8□□□□□ -1.32
SCAF11-208ENST00000546534 IGLV6-57P01721 117 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms