RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 ORMDL3Q8N138 153 aa5.21□□□□□ -1.58
USP28-215ENST00000545608 RAB37Q96AX2 223 aa5.21□□□□□ -1.58
USP28-215ENST00000545608 IFI27L1Q96BM0 104 aa5.21□□□□□ -1.58
USP28-215ENST00000545608 CAMK2N2Q96S95 79 aa5.21□□□□□ -1.58
USP28-215ENST00000545608 CYSLTR1Q9Y271 337 aa5.21□□□□□ -1.58
USP28-215ENST00000545608 APOMO95445 188 aa5.2□□□□□ -1.58
USP28-215ENST00000545608 PPP1R17O96001 155 aa5.2□□□□□ -1.58
USP28-215ENST00000545608 NMUP48645 174 aa5.2□□□□□ -1.58
USP28-215ENST00000545608 C9orf116Q5BN46 136 aaPredicted RBP5.2□□□□□ -1.58
USP28-215ENST00000545608 LINC00173Q6ZV60 143 aa5.2□□□□□ -1.58
USP28-215ENST00000545608 FAM104AQ969W3 186 aa5.2□□□□□ -1.58
USP28-215ENST00000545608 C2orf48Q96LS8 159 aa5.2□□□□□ -1.58
USP28-215ENST00000545608 PRELID3AQ96N28 172 aa5.2□□□□□ -1.58
USP28-215ENST00000545608 KIR2DL4Q99706 377 aa5.2□□□□□ -1.58
USP28-215ENST00000545608 OPRPNQ99935 248 aaPredicted RBP5.2□□□□□ -1.58
USP28-215ENST00000545608 TIMM21Q9BVV7 248 aa5.2□□□□□ -1.58
USP28-215ENST00000545608 RPL39P62891 51 aaKnown RBP5.19□□□□□ -1.58
USP28-215ENST00000545608 PHF5AQ7RTV0 110 aaKnown RBP5.19□□□□□ -1.58
USP28-215ENST00000545608 MAP1LC3AQ9H492 121 aa5.19□□□□□ -1.58
USP28-215ENST00000545608 NXT2Q9NPJ8 142 aaKnown RBP5.19□□□□□ -1.58
USP28-215ENST00000545608 PSORS1C2Q9UIG4 136 aa5.19□□□□□ -1.58
USP28-215ENST00000545608 LRP2P98164 4655 aa5.18□□□□□ -1.58
USP28-215ENST00000545608 RPL18AQ02543 176 aaKnown RBP5.18□□□□□ -1.58
USP28-215ENST00000545608 SPAG11BQ08648 103 aa5.18□□□□□ -1.58
USP28-215ENST00000545608 CEND1Q8N111 149 aa5.18□□□□□ -1.58
USP28-215ENST00000545608 C20orf78Q9BR46 151 aa5.18□□□□□ -1.58
USP28-215ENST00000545608 GEMIN7Q9H840 131 aaKnown RBP5.18□□□□□ -1.58
USP28-215ENST00000545608 SPANXB1Q9NS25 103 aaPredicted RBP5.18□□□□□ -1.58
USP28-215ENST00000545608 IGHV3OR16-9A0A0B4J2B5 98 aa5.17□□□□□ -1.58
USP28-215ENST00000545608 E9PLD3 99 aa5.17□□□□□ -1.58
USP28-215ENST00000545608 DPM2O94777 84 aa5.17□□□□□ -1.58
USP28-215ENST00000545608 IGKCP01834 107 aa5.17□□□□□ -1.58
USP28-215ENST00000545608 CKS2P33552 79 aa5.17□□□□□ -1.58
USP28-215ENST00000545608 IFI27P40305 119 aaPredicted RBP5.17□□□□□ -1.58
USP28-215ENST00000545608 RPL32P62910 135 aaKnown RBP5.17□□□□□ -1.58
USP28-215ENST00000545608 C1orf137Q5JT78 98 aa5.17□□□□□ -1.58
USP28-215ENST00000545608 C10orf25Q5T742 122 aa5.17□□□□□ -1.58
USP28-215ENST00000545608 NPYP01303 97 aa5.16□□□□□ -1.58
USP28-215ENST00000545608 PLNP26678 52 aa5.16□□□□□ -1.58
USP28-215ENST00000545608 KRTAP19-1Q8IUB9 90 aa5.16□□□□□ -1.58
USP28-215ENST00000545608 KRTAP11-1Q8IUC1 163 aa5.16□□□□□ -1.58
USP28-215ENST00000545608 SMIM2Q9BVW6 85 aa5.16□□□□□ -1.58
USP28-215ENST00000545608 NHP2Q9NX24 153 aaKnown RBP5.16□□□□□ -1.58
USP28-215ENST00000545608 MRPL35Q9NZE8 188 aaKnown RBP5.16□□□□□ -1.58
USP28-215ENST00000545608 LOC389332A0A1B0GUA5 103 aa5.15□□□□□ -1.59
USP28-215ENST00000545608 A0A1B0GWB2 263 aa5.15□□□□□ -1.59
USP28-215ENST00000545608 FAM168BA1KXE4 195 aa5.15□□□□□ -1.59
USP28-215ENST00000545608 LINC01546A6NGU7 62 aa5.15□□□□□ -1.59
USP28-215ENST00000545608 D6R8Y8 96 aa5.15□□□□□ -1.59
USP28-215ENST00000545608 H3BMG7 143 aa5.15□□□□□ -1.59
USP28-215ENST00000545608 MRPS36P82909 103 aaKnown RBP5.15□□□□□ -1.59
USP28-215ENST00000545608 UNQ6190/PRO20217Q6UXQ8 127 aa5.15□□□□□ -1.59
USP28-215ENST00000545608 HIST1H4GQ99525 98 aa5.15□□□□□ -1.59
USP28-215ENST00000545608 C6orf48Q9UBA6 75 aa5.15□□□□□ -1.59
USP28-215ENST00000545608 TRBV20-1A0A075B6N2 111 aa5.14□□□□□ -1.59
USP28-215ENST00000545608 A0A087WZ39 114 aa5.14□□□□□ -1.59
USP28-215ENST00000545608 LINC01549A6NIU2 74 aa5.14□□□□□ -1.59
USP28-215ENST00000545608 F8WDY8 70 aa5.14□□□□□ -1.59
USP28-215ENST00000545608 NDUFA1O15239 70 aa5.14□□□□□ -1.59
USP28-215ENST00000545608 IGLV7-43P04211 117 aa5.14□□□□□ -1.59
USP28-215ENST00000545608 SPINK8P0C7L1 97 aa5.14□□□□□ -1.59
USP28-215ENST00000545608 TLX1NBP0CAT3 122 aa5.14□□□□□ -1.59
USP28-215ENST00000545608 KIAA0087Q14695 138 aa5.14□□□□□ -1.59
USP28-215ENST00000545608 KRTAP7-1Q8IUC3 87 aa5.14□□□□□ -1.59
USP28-215ENST00000545608 PRR26Q8N8Z3 221 aa5.14□□□□□ -1.59
USP28-215ENST00000545608 SPANXDQ9BXN6 97 aa5.14□□□□□ -1.59
USP28-215ENST00000545608 K7EMI3 77 aa5.13□□□□□ -1.59
USP28-215ENST00000545608 GAGE2EQ4V326 116 aa5.13□□□□□ -1.59
USP28-215ENST00000545608 PPDPFLQ8WWR9 84 aa5.13□□□□□ -1.59
USP28-215ENST00000545608 NAA38Q9BRA0 125 aaKnown RBP5.13□□□□□ -1.59
USP28-215ENST00000545608 GAGE2DQ9UEU5 116 aa5.13□□□□□ -1.59
USP28-215ENST00000545608 TP73-AS1Q9UF72 201 aa5.13□□□□□ -1.59
USP28-215ENST00000545608 FXYD2P54710 66 aa5.12□□□□□ -1.59
USP28-215ENST00000545608 LINC00242Q5T6M2 205 aa5.12□□□□□ -1.59
USP28-215ENST00000545608 FAM19A5Q7Z5A7 132 aaPredicted RBP5.12□□□□□ -1.59
USP28-215ENST00000545608 PCP2Q8IVA1 136 aa5.12□□□□□ -1.59
USP28-215ENST00000545608 Q8N8P6 123 aa5.12□□□□□ -1.59
USP28-215ENST00000545608 DIRC1Q969H9 104 aa5.12□□□□□ -1.59
USP28-215ENST00000545608 ANAPC13Q9BS18 74 aa5.12□□□□□ -1.59
USP28-215ENST00000545608 ERG28Q9UKR5 140 aa5.12□□□□□ -1.59
USP28-215ENST00000545608 IGLV4-3A0A075B6K6 122 aa5.11□□□□□ -1.59
USP28-215ENST00000545608 A0A096LNJ9 63 aa5.11□□□□□ -1.59
USP28-215ENST00000545608 TRAV12-1A0A0B4J245 112 aa5.11□□□□□ -1.59
USP28-215ENST00000545608 H0Y9J4 135 aa5.11□□□□□ -1.59
USP28-215ENST00000545608 TSPAN13O95857 204 aa5.11□□□□□ -1.59
USP28-215ENST00000545608 ETDBQ3ZM63 59 aa5.11□□□□□ -1.59
USP28-215ENST00000545608 PAPPA-AS1Q5QFB9 102 aa5.11□□□□□ -1.59
USP28-215ENST00000545608 ZC2HC1BQ5TFG8 222 aa5.11□□□□□ -1.59
USP28-215ENST00000545608 C2orf82Q6UX34 121 aa5.11□□□□□ -1.59
USP28-215ENST00000545608 PYGO1Q9Y3Y4 419 aa5.11□□□□□ -1.59
USP28-215ENST00000545608 MYMXA0A1B0GTQ4 84 aa5.1□□□□□ -1.59
USP28-215ENST00000545608 M0QXV9 152 aa5.1□□□□□ -1.59
USP28-215ENST00000545608 KRTAP1-4P0C5Y4 121 aa5.1□□□□□ -1.59
USP28-215ENST00000545608 HERVK_113P61574 105 aa5.1□□□□□ -1.59
USP28-215ENST00000545608 MPLKIPQ8TAP9 179 aa5.1□□□□□ -1.59
USP28-215ENST00000545608 TRBV30A0A0K0K1B3 111 aa5.09□□□□□ -1.59
USP28-215ENST00000545608 UBE2D1P51668 147 aa5.09□□□□□ -1.59
USP28-215ENST00000545608 ORMDL2Q53FV1 153 aa5.09□□□□□ -1.59
USP28-215ENST00000545608 C9orf129Q5T035 196 aaKnown RBP5.09□□□□□ -1.59
USP28-215ENST00000545608 TEN1Q86WV5 123 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 116.1 ms